Wall clock time and date at job start Tue Mar 31 2020 01:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36537 * 127.14450 * 2 1 4 4 S 1.76197 * 126.48434 * 0.02562 * 3 2 1 5 5 C 1.81000 * 100.00165 * 179.71450 * 4 3 2 6 6 C 1.53004 * 109.47215 * 184.60323 * 5 4 3 7 7 C 1.50701 * 115.55994 * 40.04462 * 6 5 4 8 8 H 1.07993 * 120.00147 * 270.75563 * 7 6 5 9 9 C 1.37881 * 119.99568 * 90.76064 * 7 6 5 10 10 N 1.31512 * 119.99543 * 174.04931 * 9 7 6 11 11 Si 1.86799 * 120.00122 * 354.05345 * 9 7 6 12 12 H 1.48501 * 109.47085 * 92.58777 * 11 9 7 13 13 H 1.48504 * 109.46882 * 212.58567 * 11 9 7 14 14 H 1.48496 * 109.47187 * 332.58598 * 11 9 7 15 15 C 1.52996 * 117.49927 * 185.73812 * 6 5 4 16 16 C 1.53003 * 60.03410 * 107.47676 * 15 6 5 17 17 N 1.31285 * 107.03398 * 179.74401 * 3 2 1 18 18 N 1.28529 * 109.85327 * 0.25706 * 17 3 2 19 19 C 1.30292 * 110.08092 * 0.02562 * 18 17 3 20 20 C 1.50701 * 126.34089 * 179.97438 * 19 18 17 21 21 C 1.53001 * 117.50002 * 8.64850 * 20 19 18 22 22 C 1.52995 * 117.50117 * 300.02494 * 20 19 18 23 23 H 1.08995 * 109.47171 * 90.02066 * 1 2 3 24 24 H 1.09001 * 109.47097 * 210.02896 * 1 2 3 25 25 H 1.09000 * 109.46778 * 330.02526 * 1 2 3 26 26 H 1.08996 * 109.46911 * 64.60265 * 5 4 3 27 27 H 1.08997 * 109.47227 * 304.60492 * 5 4 3 28 28 H 0.97002 * 119.99591 * 180.02562 * 10 9 7 29 29 H 1.09003 * 117.49586 * 214.97942 * 15 6 5 30 30 H 1.08999 * 117.50015 * 359.97438 * 15 6 5 31 31 H 1.08994 * 117.49974 * 107.49691 * 16 15 6 32 32 H 1.08995 * 117.49813 * 252.52537 * 16 15 6 33 33 H 1.08996 * 115.54555 * 154.35514 * 20 19 18 34 34 H 1.08996 * 117.49641 * 359.97438 * 21 20 19 35 35 H 1.08996 * 117.49907 * 145.01798 * 21 20 19 36 36 H 1.08994 * 117.50308 * 214.98094 * 22 20 19 37 37 H 1.09004 * 117.49935 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2894 1.0884 0.0000 4 16 1.7928 2.7789 0.0006 5 6 3.4144 3.5829 0.0092 6 6 3.2321 5.0975 0.1267 7 6 2.1491 5.5507 1.0716 8 1 1.1390 5.6811 0.7125 9 6 2.4480 5.7989 2.3945 10 7 1.5328 6.3055 3.1915 11 14 4.1530 5.4159 3.0546 12 1 5.0078 6.6256 2.9495 13 1 4.0517 5.0035 4.4776 14 1 4.7548 4.3140 2.2616 15 6 4.4837 5.9704 0.0157 16 6 3.4708 5.9376 -1.1305 17 7 3.5222 0.6370 0.0056 18 7 3.5165 -0.6483 0.0036 19 6 2.2908 -1.0902 -0.0038 20 6 1.8624 -2.5350 -0.0089 21 6 2.9467 -3.5942 0.1989 22 6 2.3189 -3.4031 -1.1831 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3633 -0.8897 0.5143 25 1 -0.3633 0.8902 0.5134 26 1 3.9398 3.3510 -0.9172 27 1 3.9954 3.2200 0.8570 28 1 1.7432 6.4805 4.1221 29 1 4.5239 6.8725 0.6263 30 1 5.4371 5.4657 -0.1405 31 1 2.8446 6.8181 -1.2741 32 1 3.7576 5.4110 -2.0407 33 1 0.8765 -2.7344 0.4110 34 1 3.9700 -3.2459 0.3390 35 1 2.6744 -4.4906 0.7559 36 1 1.6336 -4.1739 -1.5355 37 1 2.9288 -2.9291 -1.9523 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594880044.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:56 Heat of formation + Delta-G solvation = 128.626369 kcal Electronic energy + Delta-G solvation = -19147.857378 eV Core-core repulsion = 16247.717743 eV Total energy + Delta-G solvation = -2900.139635 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.59553 -37.30372 -37.03945 -34.78762 -32.16124 -30.26348 -28.08288 -27.52449 -25.49275 -24.04579 -22.71429 -22.26932 -21.67012 -20.09824 -19.17237 -17.49444 -16.71142 -16.22807 -16.02191 -15.36409 -14.97155 -14.66521 -13.85033 -13.70623 -13.46804 -13.26653 -13.11455 -12.64006 -12.37508 -12.06314 -11.75246 -11.39532 -11.25555 -11.10476 -10.80778 -10.75453 -10.49177 -10.41630 -10.23176 -10.05181 -9.87853 -9.65811 -9.34303 -9.05938 -8.64869 -8.46935 -6.96715 -6.18494 -4.21662 1.64095 1.83522 2.76154 2.94832 2.97644 3.28281 3.38846 3.45148 3.71794 4.19537 4.38958 4.49953 4.66261 4.71762 4.80277 4.84413 5.06006 5.10807 5.33248 5.39138 5.41569 5.62150 5.63999 5.79551 5.87654 5.96182 6.03894 6.08461 6.14409 6.22746 6.42426 6.44866 6.67340 6.89639 6.91722 7.07545 7.63859 8.38545 8.83417 8.92201 9.45120 10.92361 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025514 B = 0.004695 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.153580 B = 5962.246372 C = 6005.679977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.468 5.468 3 C 0.155 3.845 4 S 0.052 5.948 5 C -0.065 4.065 6 C 0.005 3.995 7 C -0.489 4.489 8 H 0.083 0.917 9 C 0.089 3.911 10 N -0.888 5.888 11 Si 0.872 3.128 12 H -0.277 1.277 13 H -0.292 1.292 14 H -0.255 1.255 15 C -0.190 4.190 16 C -0.176 4.176 17 N -0.306 5.306 18 N -0.287 5.287 19 C 0.193 3.807 20 C -0.081 4.081 21 C -0.150 4.150 22 C -0.159 4.159 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.266 0.734 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.366 -15.598 -7.176 17.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.162 5.162 3 C -0.218 4.218 4 S 0.283 5.717 5 C -0.214 4.214 6 C 0.003 3.997 7 C -0.528 4.528 8 H 0.101 0.899 9 C -0.116 4.116 10 N -0.524 5.524 11 Si 0.700 3.300 12 H -0.203 1.203 13 H -0.219 1.219 14 H -0.180 1.180 15 C -0.229 4.229 16 C -0.213 4.213 17 N -0.151 5.151 18 N -0.127 5.127 19 C -0.077 4.077 20 C -0.102 4.102 21 C -0.188 4.188 22 C -0.198 4.198 23 H 0.100 0.900 24 H 0.107 0.893 25 H 0.116 0.884 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.139 0.861 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.022 -15.063 -6.976 16.722 hybrid contribution 0.680 -0.629 0.603 1.105 sum -1.342 -15.691 -6.373 16.989 Atomic orbital electron populations 1.22085 0.75356 1.05262 1.04076 1.46154 1.08489 1.04929 1.56628 1.28013 0.89832 0.98208 1.05712 1.86137 1.12686 0.82112 1.90767 1.23523 0.94112 0.99197 1.04542 1.19120 0.96678 0.85910 0.98035 1.20153 0.94483 1.45753 0.92375 0.89877 1.24908 0.96858 0.93226 0.96574 1.69886 1.34278 1.42098 1.06164 0.86953 0.85179 0.79784 0.78059 1.20277 1.21910 1.17976 1.22992 0.93390 1.03061 1.03443 1.22938 1.03207 1.03389 0.91774 1.74694 1.16131 1.02385 1.21844 1.73780 1.17205 1.03729 1.17962 1.23800 0.86983 0.90179 1.06689 1.19991 1.00167 0.83566 1.06450 1.23009 0.98616 0.98306 0.98876 1.23057 1.03476 1.01254 0.91998 0.90003 0.89327 0.88442 0.90911 0.89175 0.92393 0.89004 0.90632 0.89171 0.90693 0.86137 0.87244 0.87964 0.87973 0.88257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 10.91 59.85 0.65 1.45 16 2 N -0.47 -7.34 3.21 -120.91 -0.39 -7.73 16 3 C 0.16 2.99 8.07 -88.34 -0.71 2.28 16 4 S 0.05 1.03 20.66 -107.50 -2.22 -1.20 16 5 C -0.06 -1.38 5.19 37.16 0.19 -1.18 16 6 C 0.01 0.12 1.11 -155.62 -0.17 -0.06 16 7 C -0.49 -12.89 8.14 -34.44 -0.28 -13.17 16 8 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 9 C 0.09 2.44 5.46 -17.82 -0.10 2.35 16 10 N -0.89 -26.03 13.96 55.43 0.77 -25.26 16 11 Si 0.87 21.49 25.06 -169.99 -4.26 17.24 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 H -0.26 -6.13 5.40 56.52 0.31 -5.82 16 15 C -0.19 -3.95 7.63 -26.73 -0.20 -4.15 16 16 C -0.18 -3.47 9.89 -26.69 -0.26 -3.73 16 17 N -0.31 -6.47 11.60 30.68 0.36 -6.12 16 18 N -0.29 -5.51 11.79 33.00 0.39 -5.12 16 19 C 0.19 3.01 7.59 -153.99 -1.17 1.84 16 20 C -0.08 -0.86 6.00 -91.77 -0.55 -1.41 16 21 C -0.15 -1.42 10.15 -26.73 -0.27 -1.69 16 22 C -0.16 -1.42 10.23 -26.73 -0.27 -1.69 16 23 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.09 0.68 7.45 -51.93 -0.39 0.29 16 25 H 0.10 1.08 7.86 -51.93 -0.41 0.67 16 26 H 0.07 1.44 7.95 -51.92 -0.41 1.03 16 27 H 0.09 2.08 6.39 -51.92 -0.33 1.75 16 28 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.09 2.00 7.15 -51.93 -0.37 1.63 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 32 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 33 H 0.12 0.98 7.54 -51.93 -0.39 0.58 16 34 H 0.11 1.24 7.92 -51.93 -0.41 0.83 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 321.82 15.07 4.85 4.85 Total: -1.00 -32.04 321.82 -8.97 -41.01 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.32 Total: 1.48 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -3.15 Total: -19.16 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 1.13 Total: -44.22 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.26 Total: 17.24 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.22 Total: -1.20 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.04 -8.97 -41.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594880044.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.638 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds