Wall clock time and date at job start Tue Mar 31 2020 01:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36537 * 127.14450 * 2 1 4 4 S 1.76197 * 126.48434 * 0.02562 * 3 2 1 5 5 C 1.81000 * 100.00165 * 179.71450 * 4 3 2 6 6 C 1.53004 * 109.47215 * 184.60323 * 5 4 3 7 7 C 1.50701 * 115.55994 * 40.04462 * 6 5 4 8 8 H 1.07993 * 120.00147 * 270.75563 * 7 6 5 9 9 C 1.37881 * 119.99568 * 90.76064 * 7 6 5 10 10 N 1.31512 * 119.99543 * 174.04931 * 9 7 6 11 11 Si 1.86799 * 120.00122 * 354.05345 * 9 7 6 12 12 H 1.48501 * 109.47085 * 92.58777 * 11 9 7 13 13 H 1.48504 * 109.46882 * 212.58567 * 11 9 7 14 14 H 1.48496 * 109.47187 * 332.58598 * 11 9 7 15 15 C 1.52996 * 117.49927 * 185.73812 * 6 5 4 16 16 C 1.53003 * 60.03410 * 107.47676 * 15 6 5 17 17 N 1.31285 * 107.03398 * 179.74401 * 3 2 1 18 18 N 1.28529 * 109.85327 * 0.25706 * 17 3 2 19 19 C 1.30292 * 110.08092 * 0.02562 * 18 17 3 20 20 C 1.50701 * 126.34089 * 179.97438 * 19 18 17 21 21 C 1.53001 * 117.50002 * 8.64850 * 20 19 18 22 22 C 1.52995 * 117.50117 * 300.02494 * 20 19 18 23 23 H 1.08995 * 109.47171 * 90.02066 * 1 2 3 24 24 H 1.09001 * 109.47097 * 210.02896 * 1 2 3 25 25 H 1.09000 * 109.46778 * 330.02526 * 1 2 3 26 26 H 1.08996 * 109.46911 * 64.60265 * 5 4 3 27 27 H 1.08997 * 109.47227 * 304.60492 * 5 4 3 28 28 H 0.97002 * 119.99591 * 180.02562 * 10 9 7 29 29 H 1.09003 * 117.49586 * 214.97942 * 15 6 5 30 30 H 1.08999 * 117.50015 * 359.97438 * 15 6 5 31 31 H 1.08994 * 117.49974 * 107.49691 * 16 15 6 32 32 H 1.08995 * 117.49813 * 252.52537 * 16 15 6 33 33 H 1.08996 * 115.54555 * 154.35514 * 20 19 18 34 34 H 1.08996 * 117.49641 * 359.97438 * 21 20 19 35 35 H 1.08996 * 117.49907 * 145.01798 * 21 20 19 36 36 H 1.08994 * 117.50308 * 214.98094 * 22 20 19 37 37 H 1.09004 * 117.49935 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2894 1.0884 0.0000 4 16 1.7928 2.7789 0.0006 5 6 3.4144 3.5829 0.0092 6 6 3.2321 5.0975 0.1267 7 6 2.1491 5.5507 1.0716 8 1 1.1390 5.6811 0.7125 9 6 2.4480 5.7989 2.3945 10 7 1.5328 6.3055 3.1915 11 14 4.1530 5.4159 3.0546 12 1 5.0078 6.6256 2.9495 13 1 4.0517 5.0035 4.4776 14 1 4.7548 4.3140 2.2616 15 6 4.4837 5.9704 0.0157 16 6 3.4708 5.9376 -1.1305 17 7 3.5222 0.6370 0.0056 18 7 3.5165 -0.6483 0.0036 19 6 2.2908 -1.0902 -0.0038 20 6 1.8624 -2.5350 -0.0089 21 6 2.9467 -3.5942 0.1989 22 6 2.3189 -3.4031 -1.1831 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3633 -0.8897 0.5143 25 1 -0.3633 0.8902 0.5134 26 1 3.9398 3.3510 -0.9172 27 1 3.9954 3.2200 0.8570 28 1 1.7432 6.4805 4.1221 29 1 4.5239 6.8725 0.6263 30 1 5.4371 5.4657 -0.1405 31 1 2.8446 6.8181 -1.2741 32 1 3.7576 5.4110 -2.0407 33 1 0.8765 -2.7344 0.4110 34 1 3.9700 -3.2459 0.3390 35 1 2.6744 -4.4906 0.7559 36 1 1.6336 -4.1739 -1.5355 37 1 2.9288 -2.9291 -1.9523 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594880044.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:55 Heat of formation + Delta-G solvation = 110.537564 kcal Electronic energy + Delta-G solvation = -19148.641767 eV Core-core repulsion = 16247.717743 eV Total energy + Delta-G solvation = -2900.924024 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.90786 -38.77782 -38.10228 -35.98389 -34.25125 -31.59096 -29.74886 -28.55080 -27.50743 -25.09950 -23.84896 -23.31767 -23.18872 -21.20849 -20.96185 -18.91438 -18.19646 -17.58385 -17.35800 -16.84116 -16.48292 -15.68418 -15.52029 -15.21206 -14.94979 -14.67444 -14.38948 -14.11312 -13.85499 -13.19406 -13.02265 -12.77229 -12.65717 -12.38538 -12.25229 -12.10925 -12.05436 -11.96352 -11.68276 -11.45493 -11.29155 -11.25236 -10.89465 -10.71649 -10.51864 -10.23024 -8.50594 -8.31188 -6.35635 0.17500 0.57319 1.29439 1.31225 1.37742 1.48512 1.63155 1.67648 2.34534 2.91176 3.03295 3.16647 3.24782 3.60910 3.84672 3.92170 3.96244 4.06835 4.18841 4.26181 4.29148 4.37973 4.48169 4.56140 4.71730 4.74179 4.78128 4.85216 4.89313 4.96750 5.02365 5.14529 5.20952 5.27743 5.46756 5.67239 5.76526 6.27345 6.70554 7.33473 7.56211 8.83328 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025514 B = 0.004695 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.153580 B = 5962.246372 C = 6005.679977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.465 5.465 3 C 0.138 3.862 4 S 0.044 5.956 5 C -0.056 4.056 6 C -0.023 4.023 7 C -0.476 4.476 8 H 0.048 0.952 9 C 0.042 3.958 10 N -0.935 5.935 11 Si 0.918 3.082 12 H -0.264 1.264 13 H -0.301 1.301 14 H -0.246 1.246 15 C -0.186 4.186 16 C -0.153 4.153 17 N -0.341 5.341 18 N -0.329 5.329 19 C 0.210 3.790 20 C -0.097 4.097 21 C -0.149 4.149 22 C -0.142 4.142 23 H 0.104 0.896 24 H 0.126 0.874 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.266 0.734 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.156 0.844 34 H 0.083 0.917 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.469 -18.077 -8.423 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.158 5.158 3 C -0.237 4.237 4 S 0.274 5.726 5 C -0.205 4.205 6 C -0.026 4.026 7 C -0.515 4.515 8 H 0.066 0.934 9 C -0.158 4.158 10 N -0.574 5.574 11 Si 0.744 3.256 12 H -0.189 1.189 13 H -0.228 1.228 14 H -0.170 1.170 15 C -0.226 4.226 16 C -0.190 4.190 17 N -0.185 5.185 18 N -0.169 5.169 19 C -0.060 4.060 20 C -0.118 4.118 21 C -0.187 4.187 22 C -0.180 4.180 23 H 0.122 0.878 24 H 0.144 0.856 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.174 0.826 34 H 0.101 0.899 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.126 -17.538 -8.244 19.496 hybrid contribution 0.616 0.002 0.903 1.093 sum -1.510 -17.537 -7.340 19.071 Atomic orbital electron populations 1.22514 0.72448 1.06730 1.06030 1.46464 1.10165 1.03822 1.55339 1.27709 0.90330 0.98375 1.07259 1.85996 1.11964 0.83079 1.91546 1.23317 0.94775 0.98109 1.04298 1.19031 0.96973 0.86968 0.99585 1.20219 0.94202 1.44193 0.92869 0.93376 1.25532 0.99659 0.93541 0.97036 1.69998 1.36219 1.44709 1.06523 0.86210 0.82079 0.80276 0.77008 1.18900 1.22811 1.16976 1.23037 0.93850 1.02080 1.03594 1.22990 1.01784 1.02378 0.91897 1.74572 1.17511 1.03666 1.22726 1.73703 1.19502 1.03075 1.20599 1.24746 0.86082 0.92091 1.03065 1.20425 1.02078 0.80614 1.08650 1.23088 0.96984 0.98703 0.99898 1.23130 1.03154 1.00779 0.90969 0.87792 0.85615 0.89279 0.89429 0.91296 0.92501 0.90112 0.88334 0.89438 0.87665 0.82632 0.89886 0.84809 0.84364 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.19 10.91 127.77 1.39 2.58 16 2 N -0.46 -13.91 3.21 -536.45 -1.72 -15.63 16 3 C 0.14 5.31 8.07 179.55 1.45 6.76 16 4 S 0.04 1.75 20.66 -56.49 -1.17 0.59 16 5 C -0.06 -2.35 5.19 71.98 0.37 -1.98 16 6 C -0.02 -1.03 1.11 -52.90 -0.06 -1.09 16 7 C -0.48 -25.59 8.14 25.60 0.21 -25.38 16 8 H 0.05 2.87 8.06 -2.91 -0.02 2.85 16 9 C 0.04 2.35 5.46 84.66 0.46 2.81 16 10 N -0.94 -56.59 13.96 21.45 0.30 -56.29 16 11 Si 0.92 44.64 25.06 68.60 1.72 46.36 16 12 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16 13 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16 14 H -0.25 -11.51 5.40 99.48 0.54 -10.97 16 15 C -0.19 -7.43 7.63 30.59 0.23 -7.19 16 16 C -0.15 -5.75 9.89 30.62 0.30 -5.45 16 17 N -0.34 -14.49 11.60 -56.85 -0.66 -15.15 16 18 N -0.33 -12.61 11.79 -49.52 -0.58 -13.20 16 19 C 0.21 6.24 7.59 137.63 1.04 7.28 16 20 C -0.10 -1.74 6.00 -11.54 -0.07 -1.81 16 21 C -0.15 -2.38 10.15 30.59 0.31 -2.07 16 22 C -0.14 -2.03 10.23 30.59 0.31 -1.72 16 23 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.13 1.40 7.45 -2.39 -0.02 1.38 16 25 H 0.09 1.85 7.86 -2.39 -0.02 1.83 16 26 H 0.09 3.38 7.95 -2.40 -0.02 3.36 16 27 H 0.07 3.18 6.39 -2.40 -0.02 3.16 16 28 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 29 H 0.08 3.40 7.15 -2.39 -0.02 3.38 16 30 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 31 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.11 3.33 8.09 -2.39 -0.02 3.31 16 33 H 0.16 1.70 7.54 -2.39 -0.02 1.69 16 34 H 0.08 1.81 7.92 -2.39 -0.02 1.79 16 35 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -72.73 321.82 4.74 -67.99 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.90 Total: 12.59 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: 5.96 Total: -27.26 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -2.67 Total: -100.27 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.72 Total: 46.36 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -1.17 Total: 0.59 kcal Total: -72.73 4.74 -67.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594880044.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.523 kcal (2) G-P(sol) polarization free energy of solvation -72.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds