Wall clock time and date at job start Tue Mar 31 2020 00:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99881 * 2 1 4 4 N 1.46499 * 109.47100 * 124.99788 * 3 2 1 5 5 C 1.36770 * 127.14433 * 270.02699 * 4 3 2 6 6 C 1.50700 * 126.33730 * 359.97438 * 5 4 3 7 7 N 1.30294 * 107.31663 * 180.02562 * 5 4 3 8 8 N 1.28525 * 110.08408 * 359.75993 * 7 5 4 9 9 C 1.31294 * 109.85249 * 0.39500 * 8 7 5 10 10 S 1.76194 * 126.48067 * 179.88414 * 9 8 7 11 11 C 1.80997 * 100.00387 * 359.68432 * 10 9 8 12 12 C 1.53001 * 109.47479 * 180.02562 * 11 10 9 13 13 C 1.50703 * 115.54889 * 294.71486 * 12 11 10 14 14 H 1.08002 * 119.99815 * 99.45460 * 13 12 11 15 15 C 1.37880 * 120.00094 * 279.45820 * 13 12 11 16 16 N 1.31510 * 119.99779 * 5.64038 * 15 13 12 17 17 Si 1.86795 * 119.99753 * 185.63832 * 15 13 12 18 18 H 1.48508 * 109.46786 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.47282 * 299.99790 * 17 15 13 20 20 H 1.48503 * 109.47264 * 59.99915 * 17 15 13 21 21 C 1.52996 * 117.52021 * 80.41548 * 12 11 10 22 22 C 1.52996 * 117.49993 * 149.04712 * 12 11 10 23 23 H 1.07994 * 119.99689 * 179.97438 * 1 2 3 24 24 H 1.08003 * 119.99891 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.00255 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47436 * 5.00289 * 3 2 1 27 27 H 1.09002 * 109.47176 * 244.99492 * 3 2 1 28 28 H 1.08997 * 109.47198 * 90.00173 * 6 5 4 29 29 H 1.09009 * 109.46734 * 210.00095 * 6 5 4 30 30 H 1.08992 * 109.47130 * 329.99960 * 6 5 4 31 31 H 1.09007 * 109.47099 * 60.00206 * 11 10 9 32 32 H 1.08999 * 109.47340 * 300.00523 * 11 10 9 33 33 H 0.97005 * 120.00480 * 354.98417 * 16 15 13 34 34 H 1.08997 * 117.49942 * 214.97304 * 21 12 11 35 35 H 1.09008 * 117.49669 * 359.97438 * 21 12 11 36 36 H 1.09000 * 117.49991 * 359.97438 * 22 12 11 37 37 H 1.09003 * 117.50032 * 144.97378 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.7445 1.7931 2.3947 6 6 1.4474 2.3769 2.8925 7 7 3.8366 1.6353 3.0877 8 7 4.7508 1.1052 2.3561 9 6 4.2897 0.9022 1.1437 10 16 5.1736 0.2008 -0.2095 11 6 6.7742 -0.0974 0.5813 12 6 7.7354 -0.7220 -0.4321 13 6 7.3601 -2.0970 -0.9218 14 1 6.8686 -2.2148 -1.8762 15 6 7.6442 -3.2045 -0.1513 16 7 8.1408 -3.0549 1.0573 17 14 7.3237 -4.9174 -0.8240 18 1 7.7112 -5.9288 0.1921 19 1 5.8804 -5.0623 -1.1421 20 1 8.1254 -5.1229 -2.0571 21 6 8.4257 0.2169 -1.4234 22 6 9.2251 -0.4089 -0.2788 23 1 -0.5399 -0.9353 -0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8501 -0.9353 0.0004 26 1 1.3586 2.1317 0.0896 27 1 2.6214 1.4026 -0.9314 28 1 0.8204 1.5803 3.2927 29 1 1.6541 3.1054 3.6767 30 1 0.9298 2.8674 2.0682 31 1 6.6424 -0.7763 1.4238 32 1 7.1854 0.8474 0.9370 33 1 8.3752 -2.1705 1.3793 34 1 8.6084 -0.1599 -2.4298 35 1 8.1948 1.2800 -1.3541 36 1 9.5204 0.2424 0.5438 37 1 9.9338 -1.1975 -0.5317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594882453.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:15 Heat of formation + Delta-G solvation = 93.749185 kcal Electronic energy + Delta-G solvation = -19221.402068 eV Core-core repulsion = 16319.750045 eV Total energy + Delta-G solvation = -2901.652023 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -43.93578 -38.82432 -37.28112 -34.01030 -33.87544 -33.31384 -29.87985 -28.67242 -27.68261 -26.95375 -23.93023 -23.13603 -22.17183 -21.53405 -20.96192 -19.07114 -18.30308 -17.47090 -17.40889 -16.11162 -15.89657 -15.71888 -15.58913 -15.23936 -14.99736 -14.60138 -14.18581 -14.01732 -13.77674 -13.59163 -13.18472 -12.94262 -12.79577 -12.63103 -12.52344 -12.25789 -12.03159 -11.94078 -11.51885 -11.37956 -11.31961 -10.84645 -10.58518 -10.54038 -10.47628 -10.21146 -8.60851 -8.53475 -6.29779 0.08561 0.57201 1.01718 1.22065 1.54280 1.61139 1.68243 1.79763 1.86502 2.58504 3.20350 3.26684 3.41665 3.58908 3.74510 3.92982 3.94329 4.11540 4.15433 4.39781 4.41748 4.44406 4.47321 4.65592 4.72196 4.80781 4.80900 4.87827 4.97143 5.00797 5.02460 5.28922 5.41864 5.51772 5.60852 5.83265 6.11070 6.23305 6.67020 7.53087 7.54982 8.85613 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018551 B = 0.005344 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.992994 B = 5238.598289 C = 5842.575744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.211 4.211 3 C 0.130 3.870 4 N -0.458 5.458 5 C 0.188 3.812 6 C -0.059 4.059 7 N -0.341 5.341 8 N -0.343 5.343 9 C 0.143 3.857 10 S 0.036 5.964 11 C -0.039 4.039 12 C -0.003 4.003 13 C -0.573 4.573 14 H 0.050 0.950 15 C -0.016 4.016 16 N -0.931 5.931 17 Si 1.105 2.895 18 H -0.289 1.289 19 H -0.273 1.273 20 H -0.268 1.268 21 C -0.162 4.162 22 C -0.171 4.171 23 H 0.113 0.887 24 H 0.134 0.866 25 H 0.087 0.913 26 H 0.144 0.856 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.264 0.736 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.811 10.754 -4.182 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.231 4.231 3 C 0.010 3.990 4 N -0.153 5.153 5 C -0.083 4.083 6 C -0.118 4.118 7 N -0.180 5.180 8 N -0.187 5.187 9 C -0.233 4.233 10 S 0.265 5.735 11 C -0.189 4.189 12 C -0.005 4.005 13 C -0.610 4.610 14 H 0.068 0.932 15 C -0.217 4.217 16 N -0.566 5.566 17 Si 0.928 3.072 18 H -0.215 1.215 19 H -0.199 1.199 20 H -0.193 1.193 21 C -0.200 4.200 22 C -0.211 4.211 23 H 0.131 0.869 24 H 0.152 0.848 25 H 0.106 0.894 26 H 0.162 0.838 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.190 8.989 -3.727 19.753 hybrid contribution 0.277 1.458 0.238 1.503 sum -16.913 10.447 -3.489 20.184 Atomic orbital electron populations 1.24217 0.94103 1.04395 0.93862 1.22948 0.97322 0.97024 1.05764 1.21386 0.91761 0.99139 0.86688 1.46760 1.09299 1.46753 1.12444 1.26088 1.00112 1.00612 0.81487 1.20496 0.86278 1.01676 1.03338 1.73796 0.99009 1.18251 1.26968 1.74608 1.24895 1.18865 1.00296 1.27356 0.88615 1.05800 1.01486 1.85217 1.09299 1.73033 1.05905 1.23052 0.93963 1.01319 1.00525 1.18856 0.89874 0.95219 0.96594 1.21426 1.42684 0.90364 1.06552 0.93157 1.27000 0.93572 1.07302 0.93808 1.70839 1.41823 1.27082 1.16899 0.83092 0.77327 0.71433 0.75382 1.21519 1.19868 1.19321 1.22932 1.04716 0.97575 0.94731 1.22784 0.95276 1.02433 1.00577 0.86894 0.84814 0.89448 0.83809 0.87858 0.88103 0.87979 0.86987 0.92885 0.91422 0.92556 0.89262 0.88616 0.90069 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 14.32 67.78 0.97 -0.52 16 2 C -0.21 -4.05 9.85 25.64 0.25 -3.80 16 3 C 0.13 2.48 6.32 85.63 0.54 3.02 16 4 N -0.46 -13.55 2.80 -517.16 -1.45 -14.99 16 5 C 0.19 5.45 8.07 137.63 1.11 6.56 16 6 C -0.06 -0.86 10.25 71.24 0.73 -0.13 16 7 N -0.34 -13.59 12.17 -49.52 -0.60 -14.20 16 8 N -0.34 -15.53 11.60 -56.85 -0.66 -16.19 16 9 C 0.14 5.67 8.07 179.55 1.45 7.12 16 10 S 0.04 1.44 21.50 -56.49 -1.21 0.22 16 11 C -0.04 -1.85 4.95 71.98 0.36 -1.50 16 12 C 0.00 -0.15 0.85 -52.93 -0.04 -0.20 16 13 C -0.57 -30.96 8.47 25.60 0.22 -30.74 16 14 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 15 C -0.02 -0.92 5.42 84.66 0.46 -0.46 16 16 N -0.93 -56.42 13.61 21.45 0.29 -56.13 16 17 Si 1.10 49.99 29.91 68.60 2.05 52.04 16 18 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 C -0.16 -6.69 9.96 30.59 0.30 -6.38 16 22 C -0.17 -7.78 8.98 30.59 0.27 -7.50 16 23 H 0.11 1.20 8.06 -2.91 -0.02 1.18 16 24 H 0.13 0.68 7.84 -2.91 -0.02 0.66 16 25 H 0.09 2.28 8.06 -2.91 -0.02 2.26 16 26 H 0.14 1.40 6.90 -2.39 -0.02 1.38 16 27 H 0.10 2.02 7.86 -2.39 -0.02 2.01 16 28 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.11 0.80 7.27 -2.39 -0.02 0.78 16 31 H 0.05 2.92 7.62 -2.39 -0.02 2.90 16 32 H 0.07 3.10 8.09 -2.40 -0.02 3.08 16 33 H 0.26 16.17 6.08 -92.70 -0.56 15.60 16 34 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 35 H 0.10 3.48 8.14 -2.38 -0.02 3.46 16 36 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 37 H 0.07 3.44 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -75.18 332.86 6.30 -68.88 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 1.26 Total: 14.89 kcal Atomic # 6 Polarization: -41.16 SS G_CDS: 6.62 Total: -34.54 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -2.42 Total: -101.51 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.05 Total: 52.04 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -1.21 Total: 0.22 kcal Total: -75.18 6.30 -68.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594882453.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.634 kcal (2) G-P(sol) polarization free energy of solvation -75.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds