Wall clock time and date at job start Tue Mar 31 2020 00:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.46924 * 2 1 4 4 C 1.35935 * 119.71372 * 124.98070 * 3 2 1 5 5 C 1.41636 * 118.84860 * 180.02562 * 4 3 2 6 6 N 1.31559 * 120.86373 * 179.97438 * 5 4 3 7 7 N 1.38232 * 118.27483 * 359.74865 * 5 4 3 8 8 H 0.97007 * 120.36520 * 180.23811 * 7 5 4 9 9 C 1.36490 * 119.27078 * 0.49420 * 7 5 4 10 10 S 1.76200 * 119.43450 * 179.77152 * 9 7 5 11 11 C 1.81002 * 99.99817 * 179.72543 * 10 9 7 12 12 C 1.53001 * 109.47160 * 180.02562 * 11 10 9 13 13 C 1.50703 * 115.55794 * 39.69639 * 12 11 10 14 14 H 1.08000 * 119.99645 * 260.72264 * 13 12 11 15 15 C 1.37877 * 120.00061 * 80.73269 * 13 12 11 16 16 N 1.31513 * 119.99784 * 2.27265 * 15 13 12 17 17 Si 1.86800 * 120.00097 * 182.27996 * 15 13 12 18 18 H 1.48504 * 109.47084 * 59.99373 * 17 15 13 19 19 H 1.48496 * 109.47252 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47101 * 299.99797 * 17 15 13 21 21 C 1.52994 * 117.49920 * 254.00916 * 12 11 10 22 22 C 1.52995 * 117.49918 * 185.38478 * 12 11 10 23 23 N 1.31673 * 121.12737 * 359.49372 * 9 7 5 24 24 H 1.09002 * 109.47187 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47196 * 300.00255 * 1 2 3 26 26 H 1.09002 * 109.47250 * 60.00025 * 1 2 3 27 27 H 1.08994 * 109.47170 * 240.00005 * 2 1 3 28 28 H 1.09000 * 109.46789 * 119.99744 * 2 1 3 29 29 H 1.08001 * 120.57103 * 0.03801 * 4 3 2 30 30 H 0.96995 * 119.99939 * 180.02562 * 6 5 4 31 31 H 1.09004 * 109.46710 * 60.00038 * 11 10 9 32 32 H 1.09002 * 109.46893 * 299.99997 * 11 10 9 33 33 H 0.97002 * 119.99602 * 174.99103 * 16 15 13 34 34 H 1.09004 * 117.49672 * 359.97438 * 21 12 11 35 35 H 1.09004 * 117.50099 * 145.02023 * 21 12 11 36 36 H 1.09001 * 117.49973 * 214.98087 * 22 12 11 37 37 H 1.08999 * 117.49960 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8950 1.8305 0.9673 5 6 3.3550 3.1699 0.9501 6 7 4.1900 3.6086 1.8672 7 7 2.9076 4.0031 -0.0581 8 1 3.2059 4.9251 -0.1009 9 6 2.0372 3.5156 -0.9896 10 16 1.4593 4.5755 -2.2731 11 6 0.3876 3.4261 -3.1711 12 6 -0.2437 4.1447 -4.3653 13 6 0.6636 5.0911 -5.1084 14 1 0.6116 6.1524 -4.9151 15 6 1.5597 4.6022 -6.0351 16 7 1.5919 3.3151 -6.3032 17 14 2.7283 5.7679 -6.9098 18 1 3.5850 6.4533 -5.9090 19 1 3.5834 4.9990 -7.8493 20 1 1.9456 6.7783 -7.6661 21 6 -1.7237 4.5188 -4.2630 22 6 -1.2851 3.3769 -5.1819 23 7 1.6262 2.2653 -0.9487 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.2240 1.1463 1.7355 30 1 4.4968 4.5285 1.8437 31 1 -0.3978 3.0668 -2.5061 32 1 0.9777 2.5813 -3.5263 33 1 2.1705 2.9804 -7.0062 34 1 -2.2477 4.2526 -3.3450 35 1 -2.0412 5.4495 -4.7331 36 1 -1.3140 3.5563 -6.2567 37 1 -1.5202 2.3597 -4.8686 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594900435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:56 Heat of formation + Delta-G solvation = 67.312666 kcal Electronic energy + Delta-G solvation = -19247.016179 eV Core-core repulsion = 16344.217783 eV Total energy + Delta-G solvation = -2902.798396 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.50790 -36.74849 -35.86950 -33.93405 -32.13021 -31.54460 -29.45601 -27.77036 -25.57791 -24.77774 -23.87449 -21.23796 -21.19191 -19.49605 -18.44884 -17.97094 -17.06405 -16.04466 -15.27914 -14.96498 -14.74813 -14.31434 -14.03582 -13.82202 -13.65836 -13.18850 -12.93551 -12.35402 -12.23614 -11.69355 -11.45199 -11.36997 -11.12437 -11.04021 -11.01158 -10.64165 -10.36641 -10.19426 -10.17897 -9.91148 -9.66988 -9.37224 -9.04550 -8.63146 -8.23565 -7.89267 -7.06904 -6.20723 -4.29911 0.91321 1.53526 2.10541 2.78626 3.21529 3.27064 3.28235 3.29800 3.79391 4.26729 4.44363 4.71810 5.09338 5.16199 5.25680 5.36187 5.41082 5.50846 5.80586 5.87344 5.91714 6.01915 6.05972 6.07568 6.31958 6.33297 6.37970 6.40024 6.61524 6.62067 6.73897 6.96040 7.13896 7.17470 7.36798 7.70004 8.06898 8.17526 8.41889 8.71315 9.37196 10.86311 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017593 B = 0.005721 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.187161 B = 4893.403083 C = 5693.685449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.071 4.071 3 C 0.185 3.815 4 C -0.251 4.251 5 C 0.438 3.562 6 N -0.779 5.779 7 N -0.652 5.652 8 H 0.412 0.588 9 C 0.360 3.640 10 S 0.031 5.969 11 C -0.037 4.037 12 C 0.043 3.957 13 C -0.500 4.500 14 H 0.064 0.936 15 C 0.081 3.919 16 N -0.868 5.868 17 Si 0.888 3.112 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.207 4.207 22 C -0.143 4.143 23 N -0.557 5.557 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.144 0.856 30 H 0.324 0.676 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.264 0.736 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.481 -2.523 8.717 9.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 C 0.060 3.940 4 C -0.281 4.281 5 C 0.169 3.831 6 N -0.414 5.414 7 N -0.283 5.283 8 H 0.250 0.750 9 C -0.011 4.011 10 S 0.272 5.728 11 C -0.186 4.186 12 C 0.041 3.959 13 C -0.540 4.540 14 H 0.082 0.918 15 C -0.125 4.125 16 N -0.502 5.502 17 Si 0.715 3.285 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.244 4.244 22 C -0.183 4.183 23 N -0.285 5.285 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.162 0.838 30 H 0.139 0.861 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.167 -2.424 8.760 9.164 hybrid contribution 1.042 0.729 -0.339 1.316 sum -0.125 -1.695 8.422 8.592 Atomic orbital electron populations 1.21641 0.94012 1.01525 1.02808 1.20476 0.97099 0.90236 1.03103 1.20812 0.89590 0.95432 0.88202 1.20984 1.07714 0.93754 1.05670 1.20343 0.88991 0.91056 0.82744 1.70725 1.22026 1.21976 1.26649 1.44771 1.42302 1.15372 1.25813 0.75016 1.26607 0.87243 0.95198 0.92075 1.86475 1.54939 1.13594 1.17812 1.23320 0.98688 0.98656 0.97923 1.18578 0.86642 0.97806 0.92876 1.20346 1.18376 0.92475 1.22762 0.91776 1.24954 0.96357 0.94923 0.96243 1.69959 1.38145 1.12297 1.29847 0.86713 0.81141 0.81009 0.79653 1.19763 1.21130 1.20093 1.23091 1.00608 0.99853 1.00861 1.22567 1.04639 0.93611 0.97508 1.68674 1.31609 1.00411 1.27828 0.92474 0.93086 0.91237 0.89707 0.90362 0.83835 0.86063 0.91141 0.88297 0.92591 0.91364 0.90146 0.89628 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.77 37.16 0.36 -1.28 16 2 C -0.07 -0.86 6.33 -27.88 -0.18 -1.03 16 3 C 0.19 2.83 6.15 -82.76 -0.51 2.32 16 4 C -0.25 -3.85 9.66 -39.11 -0.38 -4.23 16 5 C 0.44 7.03 7.84 -155.52 -1.22 5.81 16 6 N -0.78 -12.52 14.11 31.36 0.44 -12.08 16 7 N -0.65 -9.85 5.47 -11.84 -0.06 -9.92 16 8 H 0.41 5.24 8.81 -40.82 -0.36 4.88 16 9 C 0.36 6.11 7.97 -88.06 -0.70 5.41 16 10 S 0.03 0.57 21.04 -107.50 -2.26 -1.69 16 11 C -0.04 -0.74 4.93 37.16 0.18 -0.56 16 12 C 0.04 0.95 1.64 -155.66 -0.25 0.69 16 13 C -0.50 -12.14 7.52 -34.44 -0.26 -12.40 16 14 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 15 C 0.08 2.03 5.44 -17.82 -0.10 1.93 16 16 N -0.87 -22.61 12.90 55.43 0.72 -21.89 16 17 Si 0.89 19.72 29.54 -169.99 -5.02 14.70 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 C -0.21 -4.05 9.88 -26.73 -0.26 -4.31 16 22 C -0.14 -3.04 9.49 -26.73 -0.25 -3.29 16 23 N -0.56 -9.56 8.64 -9.37 -0.08 -9.64 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 26 H 0.07 0.93 7.95 -51.93 -0.41 0.51 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.08 0.77 7.85 -51.93 -0.41 0.36 16 29 H 0.14 1.98 7.93 -52.49 -0.42 1.56 16 30 H 0.32 4.59 8.89 -40.82 -0.36 4.23 16 31 H 0.07 1.32 7.92 -51.91 -0.41 0.91 16 32 H 0.10 2.22 8.12 -51.91 -0.42 1.80 16 33 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 34 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 35 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.09 1.95 8.14 -51.93 -0.42 1.52 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 330.18 15.07 4.98 4.98 Total: -1.00 -26.66 330.18 -10.16 -36.81 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -5.29 Total: 9.68 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -3.57 Total: -10.95 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 1.01 Total: -53.53 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Atomic # 16 Polarization: 0.57 SS G_CDS: -2.26 Total: -1.69 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.66 -10.16 -36.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594900435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.125 kcal (2) G-P(sol) polarization free energy of solvation -26.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds