Wall clock time and date at job start Tue Mar 31 2020 00:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.46924 * 2 1 4 4 C 1.35935 * 119.71372 * 124.98070 * 3 2 1 5 5 C 1.41636 * 118.84860 * 180.02562 * 4 3 2 6 6 N 1.31559 * 120.86373 * 179.97438 * 5 4 3 7 7 N 1.38232 * 118.27483 * 359.74865 * 5 4 3 8 8 H 0.97007 * 120.36520 * 180.23811 * 7 5 4 9 9 C 1.36490 * 119.27078 * 0.49420 * 7 5 4 10 10 S 1.76200 * 119.43450 * 179.77152 * 9 7 5 11 11 C 1.81002 * 99.99817 * 179.72543 * 10 9 7 12 12 C 1.53001 * 109.47160 * 180.02562 * 11 10 9 13 13 C 1.50703 * 115.55794 * 39.69639 * 12 11 10 14 14 H 1.08000 * 119.99645 * 260.72264 * 13 12 11 15 15 C 1.37877 * 120.00061 * 80.73269 * 13 12 11 16 16 N 1.31513 * 119.99784 * 2.27265 * 15 13 12 17 17 Si 1.86800 * 120.00097 * 182.27996 * 15 13 12 18 18 H 1.48504 * 109.47084 * 59.99373 * 17 15 13 19 19 H 1.48496 * 109.47252 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47101 * 299.99797 * 17 15 13 21 21 C 1.52994 * 117.49920 * 254.00916 * 12 11 10 22 22 C 1.52995 * 117.49918 * 185.38478 * 12 11 10 23 23 N 1.31673 * 121.12737 * 359.49372 * 9 7 5 24 24 H 1.09002 * 109.47187 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47196 * 300.00255 * 1 2 3 26 26 H 1.09002 * 109.47250 * 60.00025 * 1 2 3 27 27 H 1.08994 * 109.47170 * 240.00005 * 2 1 3 28 28 H 1.09000 * 109.46789 * 119.99744 * 2 1 3 29 29 H 1.08001 * 120.57103 * 0.03801 * 4 3 2 30 30 H 0.96995 * 119.99939 * 180.02562 * 6 5 4 31 31 H 1.09004 * 109.46710 * 60.00038 * 11 10 9 32 32 H 1.09002 * 109.46893 * 299.99997 * 11 10 9 33 33 H 0.97002 * 119.99602 * 174.99103 * 16 15 13 34 34 H 1.09004 * 117.49672 * 359.97438 * 21 12 11 35 35 H 1.09004 * 117.50099 * 145.02023 * 21 12 11 36 36 H 1.09001 * 117.49973 * 214.98087 * 22 12 11 37 37 H 1.08999 * 117.49960 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8950 1.8305 0.9673 5 6 3.3550 3.1699 0.9501 6 7 4.1900 3.6086 1.8672 7 7 2.9076 4.0031 -0.0581 8 1 3.2059 4.9251 -0.1009 9 6 2.0372 3.5156 -0.9896 10 16 1.4593 4.5755 -2.2731 11 6 0.3876 3.4261 -3.1711 12 6 -0.2437 4.1447 -4.3653 13 6 0.6636 5.0911 -5.1084 14 1 0.6116 6.1524 -4.9151 15 6 1.5597 4.6022 -6.0351 16 7 1.5919 3.3151 -6.3032 17 14 2.7283 5.7679 -6.9098 18 1 3.5850 6.4533 -5.9090 19 1 3.5834 4.9990 -7.8493 20 1 1.9456 6.7783 -7.6661 21 6 -1.7237 4.5188 -4.2630 22 6 -1.2851 3.3769 -5.1819 23 7 1.6262 2.2653 -0.9487 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.2240 1.1463 1.7355 30 1 4.4968 4.5285 1.8437 31 1 -0.3978 3.0668 -2.5061 32 1 0.9777 2.5813 -3.5263 33 1 2.1705 2.9804 -7.0062 34 1 -2.2477 4.2526 -3.3450 35 1 -2.0412 5.4495 -4.7331 36 1 -1.3140 3.5563 -6.2567 37 1 -1.5202 2.3597 -4.8686 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594900435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:55 Heat of formation + Delta-G solvation = 54.475122 kcal Electronic energy + Delta-G solvation = -19247.572857 eV Core-core repulsion = 16344.217783 eV Total energy + Delta-G solvation = -2903.355074 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.75251 -38.42770 -37.04445 -35.14303 -34.00702 -32.65722 -30.68397 -29.36448 -27.41114 -25.95607 -25.08854 -22.87807 -22.30659 -21.18198 -19.76612 -19.22825 -18.49522 -17.70444 -16.64399 -16.45432 -16.22905 -15.63716 -15.47033 -15.20428 -14.81829 -14.72753 -14.16284 -13.94981 -13.39690 -13.28938 -12.96517 -12.80284 -12.64128 -12.41443 -12.37961 -12.05725 -11.97008 -11.72450 -11.43387 -11.32999 -11.06129 -10.82563 -10.63953 -10.44406 -9.91503 -9.24427 -8.41087 -8.10046 -6.22536 -0.34209 0.13959 0.83822 1.32102 1.44148 1.46931 1.51341 2.01554 2.43531 2.56117 3.20274 3.32536 3.49339 3.54763 4.15881 4.25278 4.36081 4.43164 4.44087 4.46447 4.66981 4.70225 4.74388 4.95155 5.04278 5.04671 5.06091 5.10566 5.28055 5.28952 5.36226 5.48846 5.51486 5.68241 5.78256 5.96560 6.35267 6.81525 6.82478 7.22396 7.46731 8.96290 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017593 B = 0.005721 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.187161 B = 4893.403083 C = 5693.685449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 C 0.174 3.826 4 C -0.252 4.252 5 C 0.428 3.572 6 N -0.788 5.788 7 N -0.642 5.642 8 H 0.422 0.578 9 C 0.356 3.644 10 S 0.031 5.969 11 C -0.024 4.024 12 C 0.017 3.983 13 C -0.503 4.503 14 H 0.058 0.942 15 C 0.042 3.958 16 N -0.896 5.896 17 Si 0.933 3.067 18 H -0.269 1.269 19 H -0.289 1.289 20 H -0.273 1.273 21 C -0.182 4.182 22 C -0.149 4.149 23 N -0.569 5.569 24 H 0.079 0.921 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.161 0.839 30 H 0.333 0.667 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.260 0.740 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.539 -2.713 10.229 10.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 C 0.049 3.951 4 C -0.281 4.281 5 C 0.159 3.841 6 N -0.424 5.424 7 N -0.274 5.274 8 H 0.262 0.738 9 C -0.017 4.017 10 S 0.270 5.730 11 C -0.173 4.173 12 C 0.015 3.985 13 C -0.543 4.543 14 H 0.076 0.924 15 C -0.160 4.160 16 N -0.533 5.533 17 Si 0.760 3.240 18 H -0.194 1.194 19 H -0.215 1.215 20 H -0.198 1.198 21 C -0.219 4.219 22 C -0.189 4.189 23 N -0.298 5.298 24 H 0.098 0.902 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.103 0.897 28 H 0.124 0.876 29 H 0.178 0.822 30 H 0.149 0.851 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.226 -2.594 10.273 10.666 hybrid contribution 1.074 0.769 -0.689 1.490 sum -0.152 -1.825 9.583 9.757 Atomic orbital electron populations 1.21602 0.93649 1.02652 1.01644 1.20604 0.97341 0.88390 1.04425 1.21288 0.89603 0.96549 0.87622 1.21276 1.07191 0.93773 1.05896 1.20561 0.89156 0.91544 0.82847 1.70720 1.22123 1.22827 1.26706 1.44682 1.41648 1.15908 1.25159 0.73843 1.26248 0.87987 0.95235 0.92240 1.86284 1.55306 1.13123 1.18322 1.23008 0.98797 0.97878 0.97623 1.18688 0.87620 0.98398 0.93782 1.20530 1.18509 0.92554 1.22662 0.92433 1.25490 0.97595 0.95847 0.97115 1.70055 1.39174 1.13472 1.30574 0.85986 0.79689 0.79571 0.78780 1.19398 1.21515 1.19792 1.23102 0.98719 0.99006 1.01099 1.22471 1.05184 0.94767 0.96476 1.68666 1.31861 1.00671 1.28606 0.90236 0.93045 0.93522 0.89713 0.87617 0.82159 0.85103 0.89937 0.91181 0.93049 0.88794 0.90071 0.91859 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.77 71.98 0.70 -2.20 16 2 C -0.07 -1.52 6.33 29.85 0.19 -1.33 16 3 C 0.17 5.02 6.15 41.79 0.26 5.27 16 4 C -0.25 -7.19 9.66 22.57 0.22 -6.97 16 5 C 0.43 12.98 7.84 134.20 1.05 14.03 16 6 N -0.79 -23.84 14.11 -54.69 -0.77 -24.62 16 7 N -0.64 -18.56 5.47 -191.37 -1.05 -19.60 16 8 H 0.42 10.19 8.81 -92.70 -0.82 9.37 16 9 C 0.36 11.73 7.97 179.45 1.43 13.16 16 10 S 0.03 1.10 21.04 -56.49 -1.19 -0.09 16 11 C -0.02 -0.95 4.93 71.98 0.36 -0.60 16 12 C 0.02 0.75 1.64 -52.93 -0.09 0.66 16 13 C -0.50 -24.49 7.52 25.60 0.19 -24.30 16 14 H 0.06 2.81 7.81 -2.91 -0.02 2.79 16 15 C 0.04 2.12 5.44 84.65 0.46 2.58 16 16 N -0.90 -47.53 12.90 21.45 0.28 -47.25 16 17 Si 0.93 40.56 29.54 68.60 2.03 42.59 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 19 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 21 C -0.18 -6.87 9.88 30.59 0.30 -6.57 16 22 C -0.15 -6.31 9.49 30.59 0.29 -6.02 16 23 N -0.57 -19.01 8.64 -183.55 -1.59 -20.59 16 24 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.05 1.19 7.95 -2.39 -0.02 1.17 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.11 1.72 7.85 -2.39 -0.02 1.70 16 29 H 0.16 3.97 7.93 -2.91 -0.02 3.94 16 30 H 0.33 8.85 8.89 -92.71 -0.82 8.02 16 31 H 0.08 3.03 7.92 -2.39 -0.02 3.01 16 32 H 0.07 3.19 8.12 -2.39 -0.02 3.17 16 33 H 0.26 13.46 8.32 -92.71 -0.77 12.69 16 34 H 0.09 3.06 8.08 -2.38 -0.02 3.04 16 35 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -55.94 330.18 2.53 -53.41 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: -0.55 Total: 28.44 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 5.36 Total: -12.28 kcal Atomic # 7 Polarization: -108.94 SS G_CDS: -3.13 Total: -112.06 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -1.19 Total: -0.09 kcal Total: -55.94 2.53 -53.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594900435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.888 kcal (2) G-P(sol) polarization free energy of solvation -55.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds