Wall clock time and date at job start Tue Mar 31 2020 01:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76199 * 100.00182 * 2 1 4 4 C 1.39749 * 120.48896 * 179.72092 * 3 2 1 5 5 C 1.38058 * 118.48541 * 179.77754 * 4 3 2 6 6 N 1.32549 * 119.29584 * 0.50188 * 5 4 3 7 7 C 1.32480 * 120.94581 * 359.74071 * 6 5 4 8 8 N 1.38403 * 119.17537 * 180.02562 * 7 6 5 9 9 C 1.46844 * 111.00131 * 235.76849 * 8 7 6 10 10 C 1.53037 * 109.52034 * 185.83972 * 9 8 7 11 11 C 1.53124 * 109.27868 * 300.81999 * 10 9 8 12 12 C 1.53116 * 109.15866 * 57.65438 * 11 10 9 13 13 H 1.09005 * 109.50163 * 62.29026 * 12 11 10 14 14 C 1.50701 * 109.50376 * 182.40281 * 12 11 10 15 15 H 1.08010 * 119.99609 * 359.80792 * 14 12 11 16 16 C 1.37872 * 120.00368 * 179.80619 * 14 12 11 17 17 N 1.31515 * 119.99704 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00226 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47089 * 59.99925 * 18 16 14 20 20 H 1.48503 * 109.47058 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47314 * 300.00195 * 18 16 14 22 22 C 1.46848 * 110.99778 * 359.97438 * 8 7 6 23 23 N 1.32458 * 121.65111 * 0.02562 * 7 6 5 24 24 H 1.09005 * 109.46889 * 299.99975 * 1 2 3 25 25 H 1.09000 * 109.47231 * 59.99947 * 1 2 3 26 26 H 1.08992 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.76013 * 0.02562 * 4 3 2 28 28 H 1.07993 * 120.35226 * 180.23917 * 5 4 3 29 29 H 1.08996 * 109.46470 * 305.85552 * 9 8 7 30 30 H 1.08997 * 109.45844 * 65.82372 * 9 8 7 31 31 H 1.09005 * 109.50262 * 180.88551 * 10 9 8 32 32 H 1.08997 * 109.53692 * 60.78046 * 10 9 8 33 33 H 1.09002 * 109.52139 * 297.75191 * 11 10 9 34 34 H 1.08995 * 109.52048 * 177.56107 * 11 10 9 35 35 H 0.97002 * 119.99913 * 180.02562 * 17 16 14 36 36 H 1.09005 * 109.46093 * 294.17466 * 22 8 7 37 37 H 1.09000 * 109.46333 * 54.14795 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.4251 2.2243 0.0059 5 6 3.6172 3.5915 0.0009 6 7 2.5628 4.3946 0.0010 7 6 1.3324 3.9035 0.0005 8 7 0.2578 4.7758 0.0000 9 6 -0.6373 4.5087 1.1331 10 6 -1.8830 5.3904 1.0195 11 6 -1.4617 6.8625 1.0136 12 6 -0.4921 7.1030 -0.1468 13 1 -0.9968 6.8985 -1.0911 14 6 -0.0265 8.5361 -0.1245 15 1 -0.3881 9.2096 0.6386 16 6 0.8610 8.9876 -1.0782 17 7 1.3017 8.1673 -2.0070 18 14 1.4388 10.7637 -1.0501 19 1 2.1242 11.0410 0.2377 20 1 2.3831 10.9949 -2.1727 21 1 0.2688 11.6672 -1.1927 22 6 0.7132 6.1718 0.0007 23 7 1.1048 2.5986 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 4.2673 1.5483 0.0101 28 1 4.6160 4.0022 0.0013 29 1 -0.9327 3.4596 1.1232 30 1 -0.1187 4.7311 2.0657 31 1 -2.5399 5.2033 1.8691 32 1 -2.4101 5.1590 0.0940 33 1 -0.9695 7.1043 1.9556 34 1 -2.3422 7.4928 0.8893 35 1 1.9264 8.4848 -2.6777 36 1 1.2254 6.3863 0.9387 37 1 1.3987 6.3306 -0.8318 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596325324.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:26 Heat of formation + Delta-G solvation = 56.617359 kcal Electronic energy + Delta-G solvation = -19824.033700 eV Core-core repulsion = 16920.771520 eV Total energy + Delta-G solvation = -2903.262180 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.74636 -38.03358 -33.90355 -33.51152 -32.49048 -30.09238 -29.61794 -28.96890 -25.31119 -24.57632 -24.11445 -22.01409 -21.42757 -18.92361 -17.98215 -17.23902 -16.39105 -15.66273 -15.39796 -15.01386 -14.52597 -14.24238 -13.96493 -13.76648 -13.64186 -13.38058 -12.90088 -12.65392 -12.43073 -12.28849 -11.89201 -11.00985 -10.91147 -10.88948 -10.82603 -10.67418 -10.49882 -10.24887 -10.23158 -10.02023 -9.54023 -9.12825 -8.93414 -8.78482 -8.37273 -7.99610 -7.64226 -5.99322 -4.06908 1.16234 1.33479 1.41774 2.06151 3.32656 3.37888 3.39875 3.74511 4.07163 4.43699 4.56715 4.98618 5.07246 5.16977 5.22196 5.31565 5.36394 5.51943 5.54187 5.66763 5.77005 5.82954 6.02784 6.24759 6.34893 6.45076 6.62939 6.69411 6.83761 6.95234 7.05520 7.11629 7.35770 7.71116 7.86420 7.98773 8.11327 8.38592 8.57348 8.96919 9.58478 11.06334 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024736 B = 0.004986 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.687080 B = 5614.672343 C = 6471.588131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.067 6.067 3 C 0.183 3.817 4 C -0.258 4.258 5 C 0.186 3.814 6 N -0.540 5.540 7 C 0.521 3.479 8 N -0.458 5.458 9 C 0.075 3.925 10 C -0.117 4.117 11 C -0.115 4.115 12 C 0.051 3.949 13 H 0.035 0.965 14 C -0.518 4.518 15 H 0.057 0.943 16 C 0.065 3.935 17 N -0.884 5.884 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.075 3.925 23 N -0.545 5.545 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.143 0.857 28 H 0.167 0.833 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.262 0.738 36 H 0.027 0.973 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.996 -14.649 5.144 15.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.169 5.831 3 C -0.077 4.077 4 C -0.289 4.289 5 C 0.017 3.983 6 N -0.261 5.261 7 C 0.163 3.837 8 N -0.176 5.176 9 C -0.051 4.051 10 C -0.154 4.154 11 C -0.153 4.153 12 C 0.032 3.968 13 H 0.053 0.947 14 C -0.556 4.556 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.522 5.522 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.050 4.050 23 N -0.269 5.269 24 H 0.108 0.892 25 H 0.110 0.890 26 H 0.117 0.883 27 H 0.160 0.840 28 H 0.185 0.815 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.654 -15.028 4.563 15.719 hybrid contribution 0.720 1.530 0.390 1.735 sum 1.374 -13.498 4.953 14.444 Atomic orbital electron populations 1.23417 0.93499 1.05740 1.07416 1.85565 1.08520 0.97905 1.91108 1.23186 0.91817 0.98515 0.94209 1.22135 0.96835 0.97919 1.12019 1.22991 0.98132 0.89155 0.87988 1.68669 0.98952 1.39968 1.18474 1.21329 0.88414 0.86739 0.87254 1.58602 1.12255 1.07134 1.39637 1.22050 0.93542 1.00204 0.89349 1.21661 0.95606 0.96738 1.01429 1.21744 0.99939 0.93137 1.00482 1.18774 0.90748 0.93725 0.93568 0.94732 1.21064 1.26866 0.94735 1.12969 0.92442 1.25002 0.96081 0.97489 0.95198 1.69855 1.32044 1.34747 1.15522 0.86655 0.78577 0.85196 0.77553 1.20276 1.21283 1.20272 1.22657 1.00815 0.78742 1.02768 1.68309 1.33809 1.03045 1.21707 0.89243 0.88990 0.88288 0.83950 0.81543 0.90598 0.94663 0.92307 0.91416 0.93420 0.92795 0.92788 0.95443 0.85953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 9.68 101.05 0.98 -0.40 16 2 S -0.07 -0.80 22.74 -107.50 -2.44 -3.24 16 3 C 0.18 2.83 7.01 -16.50 -0.12 2.71 16 4 C -0.26 -3.64 9.94 -39.08 -0.39 -4.03 16 5 C 0.19 2.92 11.28 -17.31 -0.20 2.72 16 6 N -0.54 -10.98 8.67 -14.02 -0.12 -11.10 16 7 C 0.52 10.73 7.18 -322.87 -2.32 8.42 16 8 N -0.46 -9.93 4.72 -175.45 -0.83 -10.76 16 9 C 0.07 1.37 5.33 -3.84 -0.02 1.35 16 10 C -0.12 -2.04 6.09 -26.65 -0.16 -2.20 16 11 C -0.12 -2.38 5.23 -26.61 -0.14 -2.52 16 12 C 0.05 1.28 2.26 -91.69 -0.21 1.07 16 13 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 14 C -0.52 -14.11 8.56 -34.44 -0.29 -14.41 16 15 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 16 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 17 N -0.88 -25.38 11.33 55.43 0.63 -24.75 16 18 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.07 1.84 3.68 -3.84 -0.01 1.83 16 23 N -0.55 -9.86 8.52 -12.71 -0.11 -9.97 16 24 H 0.09 0.98 8.14 -51.91 -0.42 0.56 16 25 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 26 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 27 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 29 H 0.08 1.28 7.55 -51.93 -0.39 0.89 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.12 3.41 5.63 -51.93 -0.29 3.12 16 LS Contribution 315.07 15.07 4.75 4.75 Total: -1.00 -30.15 315.07 -11.41 -41.57 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.30 Total: 1.08 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -2.97 Total: -3.76 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.43 Total: -56.59 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -0.80 SS G_CDS: -2.44 Total: -3.24 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.15 -11.41 -41.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596325324.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.183 kcal (2) G-P(sol) polarization free energy of solvation -30.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds