Wall clock time and date at job start Tue Mar 31 2020 01:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76199 * 100.00182 * 2 1 4 4 C 1.39749 * 120.48896 * 179.72092 * 3 2 1 5 5 C 1.38058 * 118.48541 * 179.77754 * 4 3 2 6 6 N 1.32549 * 119.29584 * 0.50188 * 5 4 3 7 7 C 1.32480 * 120.94581 * 359.74071 * 6 5 4 8 8 N 1.38403 * 119.17537 * 180.02562 * 7 6 5 9 9 C 1.46844 * 111.00131 * 235.76849 * 8 7 6 10 10 C 1.53037 * 109.52034 * 185.83972 * 9 8 7 11 11 C 1.53124 * 109.27868 * 300.81999 * 10 9 8 12 12 C 1.53116 * 109.15866 * 57.65438 * 11 10 9 13 13 H 1.09005 * 109.50163 * 62.29026 * 12 11 10 14 14 C 1.50701 * 109.50376 * 182.40281 * 12 11 10 15 15 H 1.08010 * 119.99609 * 359.80792 * 14 12 11 16 16 C 1.37872 * 120.00368 * 179.80619 * 14 12 11 17 17 N 1.31515 * 119.99704 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00226 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47089 * 59.99925 * 18 16 14 20 20 H 1.48503 * 109.47058 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47314 * 300.00195 * 18 16 14 22 22 C 1.46848 * 110.99778 * 359.97438 * 8 7 6 23 23 N 1.32458 * 121.65111 * 0.02562 * 7 6 5 24 24 H 1.09005 * 109.46889 * 299.99975 * 1 2 3 25 25 H 1.09000 * 109.47231 * 59.99947 * 1 2 3 26 26 H 1.08992 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.76013 * 0.02562 * 4 3 2 28 28 H 1.07993 * 120.35226 * 180.23917 * 5 4 3 29 29 H 1.08996 * 109.46470 * 305.85552 * 9 8 7 30 30 H 1.08997 * 109.45844 * 65.82372 * 9 8 7 31 31 H 1.09005 * 109.50262 * 180.88551 * 10 9 8 32 32 H 1.08997 * 109.53692 * 60.78046 * 10 9 8 33 33 H 1.09002 * 109.52139 * 297.75191 * 11 10 9 34 34 H 1.08995 * 109.52048 * 177.56107 * 11 10 9 35 35 H 0.97002 * 119.99913 * 180.02562 * 17 16 14 36 36 H 1.09005 * 109.46093 * 294.17466 * 22 8 7 37 37 H 1.09000 * 109.46333 * 54.14795 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.4251 2.2243 0.0059 5 6 3.6172 3.5915 0.0009 6 7 2.5628 4.3946 0.0010 7 6 1.3324 3.9035 0.0005 8 7 0.2578 4.7758 0.0000 9 6 -0.6373 4.5087 1.1331 10 6 -1.8830 5.3904 1.0195 11 6 -1.4617 6.8625 1.0136 12 6 -0.4921 7.1030 -0.1468 13 1 -0.9968 6.8985 -1.0911 14 6 -0.0265 8.5361 -0.1245 15 1 -0.3881 9.2096 0.6386 16 6 0.8610 8.9876 -1.0782 17 7 1.3017 8.1673 -2.0070 18 14 1.4388 10.7637 -1.0501 19 1 2.1242 11.0410 0.2377 20 1 2.3831 10.9949 -2.1727 21 1 0.2688 11.6672 -1.1927 22 6 0.7132 6.1718 0.0007 23 7 1.1048 2.5986 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 4.2673 1.5483 0.0101 28 1 4.6160 4.0022 0.0013 29 1 -0.9327 3.4596 1.1232 30 1 -0.1187 4.7311 2.0657 31 1 -2.5399 5.2033 1.8691 32 1 -2.4101 5.1590 0.0940 33 1 -0.9695 7.1043 1.9556 34 1 -2.3422 7.4928 0.8893 35 1 1.9264 8.4848 -2.6777 36 1 1.2254 6.3863 0.9387 37 1 1.3987 6.3306 -0.8318 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596325324.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:26 Heat of formation + Delta-G solvation = 39.842756 kcal Electronic energy + Delta-G solvation = -19824.761101 eV Core-core repulsion = 16920.771520 eV Total energy + Delta-G solvation = -2903.989581 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.11358 -39.61777 -35.67431 -34.83478 -34.23408 -31.56290 -31.35797 -29.82564 -27.15919 -26.07153 -25.58517 -23.52310 -23.06730 -20.61186 -19.36214 -18.69889 -18.16537 -17.15106 -16.58714 -16.48604 -16.33326 -15.60825 -15.36794 -15.07948 -14.84812 -14.69284 -14.44415 -14.21546 -14.12555 -13.54739 -13.30889 -12.85662 -12.64813 -12.36188 -12.20983 -12.14118 -12.05269 -11.84040 -11.77748 -11.61311 -11.17656 -10.91234 -10.86929 -10.46301 -10.15707 -9.42711 -8.76278 -8.09089 -6.24862 -0.10622 0.06388 0.35929 1.12805 1.42265 1.43957 1.51629 2.32371 2.44876 2.71638 3.18039 3.33922 3.71810 3.92944 4.04770 4.09374 4.24593 4.29654 4.31810 4.34676 4.46890 4.51402 4.75057 4.80676 4.88583 4.96339 4.99826 5.13319 5.22730 5.24830 5.32754 5.59264 5.63276 5.79352 5.93628 6.12121 6.32913 6.38633 6.86366 7.16885 7.44381 8.95005 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024736 B = 0.004986 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.687080 B = 5614.672343 C = 6471.588131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.024 6.024 3 C 0.157 3.843 4 C -0.241 4.241 5 C 0.172 3.828 6 N -0.585 5.585 7 C 0.496 3.504 8 N -0.475 5.475 9 C 0.077 3.923 10 C -0.107 4.107 11 C -0.109 4.109 12 C 0.047 3.953 13 H -0.002 1.002 14 C -0.538 4.538 15 H 0.059 0.941 16 C 0.015 3.985 17 N -0.913 5.913 18 Si 0.956 3.044 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.269 1.269 22 C 0.103 3.897 23 N -0.550 5.550 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.132 0.868 27 H 0.182 0.818 28 H 0.198 0.802 29 H 0.094 0.906 30 H 0.031 0.969 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.260 0.740 36 H 0.006 0.994 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.154 -16.425 6.176 17.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.212 5.788 3 C -0.102 4.102 4 C -0.271 4.271 5 C 0.006 3.994 6 N -0.307 5.307 7 C 0.137 3.863 8 N -0.193 5.193 9 C -0.049 4.049 10 C -0.145 4.145 11 C -0.147 4.147 12 C 0.028 3.972 13 H 0.016 0.984 14 C -0.576 4.576 15 H 0.077 0.923 16 C -0.184 4.184 17 N -0.552 5.552 18 Si 0.782 3.218 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.194 1.194 22 C -0.023 4.023 23 N -0.274 5.274 24 H 0.104 0.896 25 H 0.097 0.903 26 H 0.150 0.850 27 H 0.199 0.801 28 H 0.215 0.785 29 H 0.112 0.888 30 H 0.050 0.950 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.025 0.975 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.829 -16.844 5.608 17.773 hybrid contribution 0.734 1.873 0.064 2.013 sum 1.563 -14.971 5.673 16.086 Atomic orbital electron populations 1.23526 0.92604 1.07635 1.06550 1.85425 1.09450 0.93873 1.90006 1.23987 0.92208 1.00393 0.93587 1.22570 0.97614 0.97770 1.09138 1.23583 0.98320 0.89983 0.87478 1.68594 0.99962 1.42033 1.20138 1.21299 0.88326 0.87608 0.89044 1.58574 1.13505 1.05671 1.41598 1.22141 0.93160 1.01347 0.88243 1.21626 0.95752 0.94060 1.03024 1.21629 0.98954 0.95778 0.98340 1.18727 0.91728 0.93113 0.93664 0.98403 1.21463 1.27013 0.96097 1.13026 0.92311 1.25802 0.96200 1.01552 0.94851 1.70031 1.32517 1.36508 1.16127 0.85642 0.78240 0.80327 0.77632 1.19612 1.21100 1.19357 1.22004 0.99447 0.81009 0.99886 1.68319 1.34829 1.02106 1.22132 0.89635 0.90295 0.84980 0.80051 0.78503 0.88801 0.95049 0.88233 0.91775 0.93365 0.92171 0.93069 0.97526 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 9.68 113.37 1.10 -1.36 16 2 S -0.02 -0.50 22.74 -56.49 -1.28 -1.79 16 3 C 0.16 4.59 7.01 84.89 0.59 5.19 16 4 C -0.24 -6.29 9.94 22.59 0.22 -6.06 16 5 C 0.17 5.31 11.28 84.54 0.95 6.27 16 6 N -0.59 -24.50 8.67 -198.27 -1.72 -26.22 16 7 C 0.50 20.91 7.18 261.51 1.88 22.79 16 8 N -0.47 -21.25 4.72 -709.00 -3.34 -24.59 16 9 C 0.08 2.80 5.33 86.33 0.46 3.26 16 10 C -0.11 -3.64 6.09 30.65 0.19 -3.45 16 11 C -0.11 -4.54 5.23 30.67 0.16 -4.38 16 12 C 0.05 2.44 2.26 -11.49 -0.03 2.42 16 13 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 14 C -0.54 -30.22 8.56 25.60 0.22 -30.00 16 15 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 16 C 0.02 0.87 5.30 84.65 0.45 1.32 16 17 N -0.91 -54.65 11.33 21.45 0.24 -54.40 16 18 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 C 0.10 5.33 3.68 86.32 0.32 5.64 16 23 N -0.55 -19.66 8.52 -194.13 -1.65 -21.32 16 24 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.08 1.71 8.14 -2.40 -0.02 1.69 16 26 H 0.13 1.53 8.14 -2.40 -0.02 1.51 16 27 H 0.18 3.20 8.06 -2.91 -0.02 3.18 16 28 H 0.20 4.49 8.06 -2.91 -0.02 4.47 16 29 H 0.09 3.06 7.55 -2.39 -0.02 3.04 16 30 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 32 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16 33 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 36 H 0.01 0.35 8.10 -2.38 -0.02 0.33 16 37 H 0.09 5.05 5.63 -2.39 -0.01 5.04 16 Total: -1.00 -68.97 315.07 1.84 -67.14 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 1.06 Total: 13.21 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 6.51 Total: 1.64 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -6.47 Total: -126.54 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -0.50 SS G_CDS: -1.28 Total: -1.79 kcal Total: -68.97 1.84 -67.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596325324.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.979 kcal (2) G-P(sol) polarization free energy of solvation -68.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds