Wall clock time and date at job start Tue Mar 31 2020 01:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76198 * 100.00221 * 2 1 4 4 C 1.39749 * 120.49433 * 180.02562 * 3 2 1 5 5 C 1.38048 * 118.48748 * 179.97438 * 4 3 2 6 6 N 1.32544 * 119.29983 * 359.97438 * 5 4 3 7 7 C 1.32475 * 120.94818 * 0.02562 * 6 5 4 8 8 N 1.38401 * 119.17903 * 180.02562 * 7 6 5 9 9 C 1.46846 * 111.00611 * 124.20495 * 8 7 6 10 10 C 1.53034 * 109.52366 * 174.16169 * 9 8 7 11 11 C 1.53123 * 109.31295 * 59.15816 * 10 9 8 12 12 C 1.53115 * 109.15599 * 302.40573 * 11 10 9 13 13 H 1.09001 * 109.50153 * 297.62985 * 12 11 10 14 14 C 1.50702 * 109.50104 * 177.55377 * 12 11 10 15 15 H 1.08002 * 120.00299 * 0.08173 * 14 12 11 16 16 C 1.37884 * 119.99942 * 179.79731 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.46853 * 110.99585 * 359.97438 * 8 7 6 23 23 N 1.32455 * 121.65184 * 0.26661 * 7 6 5 24 24 H 1.09002 * 109.47178 * 59.99715 * 1 2 3 25 25 H 1.08995 * 109.47109 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.46663 * 300.00015 * 1 2 3 27 27 H 1.08000 * 120.75724 * 359.97438 * 4 3 2 28 28 H 1.07996 * 120.35059 * 180.02562 * 5 4 3 29 29 H 1.09000 * 109.46012 * 294.18072 * 9 8 7 30 30 H 1.08996 * 109.46190 * 54.14168 * 9 8 7 31 31 H 1.09004 * 109.50087 * 179.11901 * 10 9 8 32 32 H 1.08999 * 109.50490 * 299.23403 * 10 9 8 33 33 H 1.08991 * 109.55573 * 182.47900 * 11 10 9 34 34 H 1.09004 * 109.48618 * 62.28518 * 11 10 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 36 36 H 1.08999 * 109.46055 * 65.82800 * 22 8 7 37 37 H 1.08993 * 109.46279 * 305.85554 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.4251 2.2244 -0.0005 5 6 3.6171 3.5915 -0.0011 6 7 2.5627 4.3946 -0.0016 7 6 1.3323 3.9036 -0.0010 8 7 0.2577 4.7758 -0.0021 9 6 -0.6366 4.5078 -1.1356 10 6 -1.8824 5.3895 -1.0237 11 6 -1.4619 6.8619 -1.0182 12 6 -0.4924 7.1032 0.1421 13 1 -0.9974 6.8999 1.0865 14 6 -0.0268 8.5363 0.1189 15 1 -0.3868 9.2088 -0.6457 16 6 0.8545 8.9905 1.0772 17 7 1.2929 8.1716 2.0082 18 14 1.4257 10.7688 1.0529 19 1 0.7906 11.4772 -0.0873 20 1 1.0377 11.4307 2.3244 21 1 2.9024 10.8124 0.9027 22 6 0.7132 6.1719 -0.0031 23 7 1.1047 2.5987 0.0052 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 4.2674 1.5484 -0.0005 28 1 4.6159 4.0023 -0.0019 29 1 -0.1174 4.7293 -2.0681 30 1 -0.9320 3.4587 -1.1250 31 1 -2.5387 5.2017 -1.8735 32 1 -2.4096 5.1588 -0.0980 33 1 -2.3424 7.4923 -0.8944 34 1 -0.9696 7.1030 -1.9604 35 1 1.9131 8.4910 2.6822 36 1 1.2262 6.3858 -0.9407 37 1 1.3978 6.3311 0.8299 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596325327.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:30 Heat of formation + Delta-G solvation = 56.483018 kcal Electronic energy + Delta-G solvation = -19822.292982 eV Core-core repulsion = 16919.024977 eV Total energy + Delta-G solvation = -2903.268005 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.74703 -38.03328 -33.90481 -33.51138 -32.49131 -30.09437 -29.62165 -28.96912 -25.31301 -24.57929 -24.11666 -22.01667 -21.42944 -18.92306 -17.98291 -17.23995 -16.39473 -15.66731 -15.39860 -15.01880 -14.52061 -14.23970 -13.96436 -13.76895 -13.64306 -13.38163 -12.90261 -12.65515 -12.43132 -12.29314 -11.90245 -11.02903 -10.92402 -10.89071 -10.81563 -10.67125 -10.46481 -10.25642 -10.22746 -10.02375 -9.54461 -9.13071 -8.91934 -8.78785 -8.38170 -7.99572 -7.64246 -5.99923 -4.07233 1.16075 1.33390 1.41712 2.06095 3.30170 3.38500 3.41938 3.74358 4.07053 4.43535 4.56587 4.98502 5.07196 5.16916 5.22089 5.31406 5.36150 5.51847 5.54024 5.66702 5.76930 5.82877 6.02624 6.24662 6.34849 6.45009 6.62844 6.69257 6.83701 6.95054 7.05334 7.11579 7.35695 7.71361 7.86359 7.98519 8.10966 8.38374 8.57225 8.97204 9.58288 11.05868 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024757 B = 0.004981 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.743278 B = 5620.197531 C = 6475.378695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.067 6.067 3 C 0.182 3.818 4 C -0.258 4.258 5 C 0.186 3.814 6 N -0.540 5.540 7 C 0.521 3.479 8 N -0.458 5.458 9 C 0.075 3.925 10 C -0.117 4.117 11 C -0.115 4.115 12 C 0.050 3.950 13 H 0.035 0.965 14 C -0.516 4.516 15 H 0.058 0.942 16 C 0.064 3.936 17 N -0.884 5.884 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.075 3.925 23 N -0.545 5.545 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.143 0.857 28 H 0.167 0.833 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.261 0.739 36 H 0.027 0.973 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.991 -14.663 -5.187 15.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.169 5.831 3 C -0.077 4.077 4 C -0.289 4.289 5 C 0.017 3.983 6 N -0.261 5.261 7 C 0.163 3.837 8 N -0.177 5.177 9 C -0.051 4.051 10 C -0.154 4.154 11 C -0.153 4.153 12 C 0.031 3.969 13 H 0.053 0.947 14 C -0.555 4.555 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.522 5.522 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.049 4.049 23 N -0.269 5.269 24 H 0.108 0.892 25 H 0.117 0.883 26 H 0.110 0.890 27 H 0.161 0.839 28 H 0.185 0.815 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.046 0.954 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.641 -15.038 -4.606 15.740 hybrid contribution 0.727 1.521 -0.360 1.724 sum 1.368 -13.517 -4.965 14.465 Atomic orbital electron populations 1.23419 0.93497 1.05741 1.07417 1.85565 1.08522 0.97899 1.91107 1.23193 0.91815 0.98516 0.94222 1.22134 0.96839 0.97918 1.11996 1.22987 0.98131 0.89155 0.87997 1.68661 0.98962 1.39982 1.18463 1.21326 0.88408 0.86737 0.87265 1.58591 1.12304 1.07114 1.39646 1.22049 0.93547 1.00195 0.89337 1.21660 0.95611 0.96739 1.01428 1.21741 0.99941 0.93129 1.00475 1.18786 0.90765 0.93762 0.93586 0.94722 1.21142 1.26985 0.94723 1.12639 0.92328 1.25011 0.96100 0.97511 0.95208 1.69879 1.32328 1.34619 1.15335 0.86544 0.78497 0.85122 0.77890 1.19788 1.21028 1.20994 1.22649 1.00781 0.78746 1.02756 1.68315 1.33808 1.03045 1.21684 0.89242 0.88286 0.88988 0.83946 0.81545 0.94664 0.90604 0.92300 0.91420 0.92782 0.93422 0.92909 0.95434 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 9.68 101.05 0.98 -0.40 16 2 S -0.07 -0.80 22.74 -107.50 -2.44 -3.24 16 3 C 0.18 2.82 7.01 -16.49 -0.12 2.71 16 4 C -0.26 -3.64 9.94 -39.09 -0.39 -4.02 16 5 C 0.19 2.92 11.28 -17.31 -0.20 2.72 16 6 N -0.54 -10.98 8.67 -14.03 -0.12 -11.11 16 7 C 0.52 10.73 7.17 -322.89 -2.32 8.42 16 8 N -0.46 -9.93 4.71 -175.45 -0.83 -10.76 16 9 C 0.07 1.37 5.33 -3.84 -0.02 1.35 16 10 C -0.12 -2.04 6.09 -26.65 -0.16 -2.20 16 11 C -0.12 -2.38 5.23 -26.61 -0.14 -2.51 16 12 C 0.05 1.25 2.26 -91.69 -0.21 1.05 16 13 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 14 C -0.52 -14.07 8.56 -34.44 -0.29 -14.36 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.76 5.31 -17.82 -0.09 1.67 16 17 N -0.88 -25.39 11.34 55.43 0.63 -24.76 16 18 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.08 1.86 3.68 -3.83 -0.01 1.84 16 23 N -0.54 -9.86 8.53 -12.71 -0.11 -9.97 16 24 H 0.09 0.98 8.14 -51.92 -0.42 0.56 16 25 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 26 H 0.09 1.07 8.13 -51.91 -0.42 0.65 16 27 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.28 7.55 -51.93 -0.39 0.88 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.03 0.70 8.10 -51.93 -0.42 0.27 16 37 H 0.12 3.40 5.65 -51.93 -0.29 3.11 16 LS Contribution 315.12 15.07 4.75 4.75 Total: -1.00 -30.22 315.12 -11.41 -41.63 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.30 Total: 1.01 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.97 Total: -3.74 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.43 Total: -56.59 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -0.80 SS G_CDS: -2.44 Total: -3.24 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.22 -11.41 -41.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596325327.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.111 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds