Wall clock time and date at job start Tue Mar 31 2020 01:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76198 * 100.00221 * 2 1 4 4 C 1.39749 * 120.49433 * 180.02562 * 3 2 1 5 5 C 1.38048 * 118.48748 * 179.97438 * 4 3 2 6 6 N 1.32544 * 119.29983 * 359.97438 * 5 4 3 7 7 C 1.32475 * 120.94818 * 0.02562 * 6 5 4 8 8 N 1.38401 * 119.17903 * 180.02562 * 7 6 5 9 9 C 1.46846 * 111.00611 * 124.20495 * 8 7 6 10 10 C 1.53034 * 109.52366 * 174.16169 * 9 8 7 11 11 C 1.53123 * 109.31295 * 59.15816 * 10 9 8 12 12 C 1.53115 * 109.15599 * 302.40573 * 11 10 9 13 13 H 1.09001 * 109.50153 * 297.62985 * 12 11 10 14 14 C 1.50702 * 109.50104 * 177.55377 * 12 11 10 15 15 H 1.08002 * 120.00299 * 0.08173 * 14 12 11 16 16 C 1.37884 * 119.99942 * 179.79731 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.46853 * 110.99585 * 359.97438 * 8 7 6 23 23 N 1.32455 * 121.65184 * 0.26661 * 7 6 5 24 24 H 1.09002 * 109.47178 * 59.99715 * 1 2 3 25 25 H 1.08995 * 109.47109 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.46663 * 300.00015 * 1 2 3 27 27 H 1.08000 * 120.75724 * 359.97438 * 4 3 2 28 28 H 1.07996 * 120.35059 * 180.02562 * 5 4 3 29 29 H 1.09000 * 109.46012 * 294.18072 * 9 8 7 30 30 H 1.08996 * 109.46190 * 54.14168 * 9 8 7 31 31 H 1.09004 * 109.50087 * 179.11901 * 10 9 8 32 32 H 1.08999 * 109.50490 * 299.23403 * 10 9 8 33 33 H 1.08991 * 109.55573 * 182.47900 * 11 10 9 34 34 H 1.09004 * 109.48618 * 62.28518 * 11 10 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 36 36 H 1.08999 * 109.46055 * 65.82800 * 22 8 7 37 37 H 1.08993 * 109.46279 * 305.85554 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.4251 2.2244 -0.0005 5 6 3.6171 3.5915 -0.0011 6 7 2.5627 4.3946 -0.0016 7 6 1.3323 3.9036 -0.0010 8 7 0.2577 4.7758 -0.0021 9 6 -0.6366 4.5078 -1.1356 10 6 -1.8824 5.3895 -1.0237 11 6 -1.4619 6.8619 -1.0182 12 6 -0.4924 7.1032 0.1421 13 1 -0.9974 6.8999 1.0865 14 6 -0.0268 8.5363 0.1189 15 1 -0.3868 9.2088 -0.6457 16 6 0.8545 8.9905 1.0772 17 7 1.2929 8.1716 2.0082 18 14 1.4257 10.7688 1.0529 19 1 0.7906 11.4772 -0.0873 20 1 1.0377 11.4307 2.3244 21 1 2.9024 10.8124 0.9027 22 6 0.7132 6.1719 -0.0031 23 7 1.1047 2.5987 0.0052 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 4.2674 1.5484 -0.0005 28 1 4.6159 4.0023 -0.0019 29 1 -0.1174 4.7293 -2.0681 30 1 -0.9320 3.4587 -1.1250 31 1 -2.5387 5.2017 -1.8735 32 1 -2.4096 5.1588 -0.0980 33 1 -2.3424 7.4923 -0.8944 34 1 -0.9696 7.1030 -1.9604 35 1 1.9131 8.4910 2.6822 36 1 1.2262 6.3858 -0.9407 37 1 1.3978 6.3311 0.8299 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596325327.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:29 Heat of formation + Delta-G solvation = 39.644735 kcal Electronic energy + Delta-G solvation = -19823.023145 eV Core-core repulsion = 16919.024977 eV Total energy + Delta-G solvation = -2903.998168 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.11367 -39.61689 -35.67583 -34.83415 -34.23491 -31.56563 -31.36032 -29.82529 -27.16278 -26.07358 -25.58676 -23.52516 -23.06877 -20.61005 -19.36283 -18.70083 -18.17200 -17.15413 -16.58782 -16.48187 -16.33432 -15.60881 -15.36444 -15.08361 -14.85025 -14.69182 -14.44891 -14.21445 -14.13231 -13.55252 -13.30920 -12.90362 -12.61782 -12.35719 -12.20023 -12.14249 -12.04642 -11.83436 -11.77551 -11.61703 -11.18157 -10.90966 -10.86243 -10.47590 -10.15992 -9.42487 -8.76286 -8.09768 -6.25254 -0.10714 0.06327 0.35912 1.12795 1.40802 1.42399 1.54111 2.32203 2.44609 2.71583 3.17700 3.33801 3.71753 3.92906 4.04739 4.09386 4.24590 4.29634 4.31766 4.34694 4.46860 4.51357 4.75061 4.80691 4.88555 4.96322 4.99774 5.13325 5.22720 5.24732 5.32686 5.59575 5.63283 5.79288 5.93476 6.11805 6.32905 6.38489 6.86540 7.16817 7.44110 8.94803 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024757 B = 0.004981 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.743278 B = 5620.197531 C = 6475.378695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.024 6.024 3 C 0.157 3.843 4 C -0.241 4.241 5 C 0.172 3.828 6 N -0.585 5.585 7 C 0.496 3.504 8 N -0.475 5.475 9 C 0.077 3.923 10 C -0.107 4.107 11 C -0.109 4.109 12 C 0.046 3.954 13 H -0.002 1.002 14 C -0.535 4.535 15 H 0.059 0.941 16 C 0.015 3.985 17 N -0.914 5.914 18 Si 0.956 3.044 19 H -0.264 1.264 20 H -0.280 1.280 21 H -0.282 1.282 22 C 0.103 3.897 23 N -0.550 5.550 24 H 0.085 0.915 25 H 0.132 0.868 26 H 0.078 0.922 27 H 0.182 0.818 28 H 0.198 0.802 29 H 0.031 0.969 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.260 0.740 36 H 0.007 0.993 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.151 -16.450 -6.217 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.213 5.787 3 C -0.102 4.102 4 C -0.271 4.271 5 C 0.006 3.994 6 N -0.307 5.307 7 C 0.137 3.863 8 N -0.194 5.194 9 C -0.049 4.049 10 C -0.145 4.145 11 C -0.147 4.147 12 C 0.027 3.973 13 H 0.016 0.984 14 C -0.574 4.574 15 H 0.077 0.923 16 C -0.185 4.185 17 N -0.552 5.552 18 Si 0.782 3.218 19 H -0.188 1.188 20 H -0.206 1.206 21 H -0.208 1.208 22 C -0.023 4.023 23 N -0.274 5.274 24 H 0.104 0.896 25 H 0.150 0.850 26 H 0.097 0.903 27 H 0.199 0.801 28 H 0.215 0.785 29 H 0.050 0.950 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.025 0.975 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.818 -16.866 -5.648 17.805 hybrid contribution 0.742 1.869 -0.033 2.011 sum 1.560 -14.997 -5.682 16.113 Atomic orbital electron populations 1.23528 0.92603 1.07635 1.06551 1.85425 1.09451 0.93867 1.90002 1.23993 0.92204 1.00394 0.93590 1.22567 0.97619 0.97768 1.09126 1.23577 0.98317 0.89984 0.87487 1.68588 0.99971 1.42040 1.20138 1.21295 0.88320 0.87605 0.89047 1.58562 1.13553 1.05653 1.41610 1.22141 0.93164 1.01339 0.88235 1.21625 0.95758 0.94057 1.03021 1.21626 0.98955 0.95773 0.98337 1.18738 0.91742 0.93137 0.93681 0.98396 1.21521 1.27122 0.96067 1.12666 0.92309 1.25808 0.96216 1.01571 0.94869 1.70049 1.32830 1.36407 1.15956 0.85530 0.77918 0.80234 0.78127 1.18815 1.20606 1.20756 1.21996 0.99409 0.81013 0.99884 1.68326 1.34829 1.02109 1.22116 0.89627 0.84979 0.90300 0.80051 0.78515 0.95029 0.88805 0.88222 0.91789 0.92165 0.93357 0.93088 0.97482 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 9.68 113.37 1.10 -1.36 16 2 S -0.02 -0.50 22.74 -56.49 -1.28 -1.79 16 3 C 0.16 4.59 7.01 84.88 0.59 5.18 16 4 C -0.24 -6.28 9.94 22.59 0.22 -6.06 16 5 C 0.17 5.31 11.28 84.54 0.95 6.27 16 6 N -0.59 -24.50 8.67 -198.29 -1.72 -26.22 16 7 C 0.50 20.91 7.17 261.51 1.88 22.78 16 8 N -0.47 -21.25 4.71 -709.01 -3.34 -24.59 16 9 C 0.08 2.80 5.33 86.32 0.46 3.26 16 10 C -0.11 -3.63 6.09 30.65 0.19 -3.45 16 11 C -0.11 -4.53 5.23 30.67 0.16 -4.37 16 12 C 0.05 2.41 2.26 -11.49 -0.03 2.38 16 13 H 0.00 -0.13 8.14 -2.39 -0.02 -0.14 16 14 C -0.54 -30.09 8.56 25.60 0.22 -29.87 16 15 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 16 C 0.01 0.83 5.31 84.66 0.45 1.28 16 17 N -0.91 -54.68 11.34 21.45 0.24 -54.44 16 18 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 19 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 C 0.10 5.35 3.68 86.32 0.32 5.66 16 23 N -0.55 -19.66 8.53 -194.12 -1.66 -21.31 16 24 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.13 1.53 8.14 -2.40 -0.02 1.51 16 26 H 0.08 1.70 8.13 -2.39 -0.02 1.69 16 27 H 0.18 3.20 8.06 -2.91 -0.02 3.18 16 28 H 0.20 4.50 8.06 -2.91 -0.02 4.47 16 29 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 3.06 7.55 -2.39 -0.02 3.04 16 31 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 36 H 0.01 0.37 8.10 -2.39 -0.02 0.35 16 37 H 0.08 5.01 5.65 -2.39 -0.01 5.00 16 Total: -1.00 -69.10 315.12 1.84 -67.26 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 1.05 Total: 12.99 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 6.51 Total: 1.71 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -6.47 Total: -126.56 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: -0.50 SS G_CDS: -1.28 Total: -1.79 kcal Total: -69.10 1.84 -67.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596325327.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.903 kcal (2) G-P(sol) polarization free energy of solvation -69.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds