Wall clock time and date at job start Tue Mar 31 2020 01:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76195 * 102.99844 * 2 1 4 4 C 1.39235 * 120.04721 * 179.97438 * 3 2 1 5 5 N 1.32013 * 120.07764 * 179.97438 * 4 3 2 6 6 C 1.32087 * 120.17276 * 0.02562 * 5 4 3 7 7 C 1.39132 * 120.10075 * 0.02562 * 6 5 4 8 8 N 1.38997 * 120.04083 * 179.97438 * 7 6 5 9 9 C 1.46830 * 110.98264 * 304.21699 * 8 7 6 10 10 C 1.53038 * 109.51757 * 174.15535 * 9 8 7 11 11 C 1.53127 * 109.27941 * 59.17550 * 10 9 8 12 12 C 1.53117 * 109.15989 * 302.34585 * 11 10 9 13 13 H 1.09001 * 109.50874 * 297.71787 * 12 11 10 14 14 C 1.50701 * 109.53492 * 177.61137 * 12 11 10 15 15 H 1.07991 * 119.99887 * 0.18211 * 14 12 11 16 16 C 1.37877 * 120.00095 * 180.17846 * 14 12 11 17 17 N 1.31523 * 120.00030 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00172 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47350 * 59.99932 * 18 16 14 20 20 H 1.48503 * 109.47090 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47151 * 299.99729 * 18 16 14 22 22 C 1.46847 * 111.00193 * 180.02562 * 8 7 6 23 23 N 1.32752 * 119.92353 * 0.23103 * 7 6 5 24 24 H 1.08996 * 109.47086 * 299.99857 * 1 2 3 25 25 H 1.09004 * 109.46770 * 59.99976 * 1 2 3 26 26 H 1.09005 * 109.47209 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.96218 * 359.97438 * 4 3 2 28 28 H 1.08007 * 119.94743 * 179.97438 * 6 5 4 29 29 H 1.08995 * 109.46742 * 54.13772 * 9 8 7 30 30 H 1.09004 * 109.46459 * 294.16602 * 9 8 7 31 31 H 1.08997 * 109.50308 * 299.23764 * 10 9 8 32 32 H 1.09000 * 109.50697 * 179.11489 * 10 9 8 33 33 H 1.08997 * 109.52581 * 182.44219 * 11 10 9 34 34 H 1.09004 * 109.51868 * 62.24855 * 11 10 9 35 35 H 0.96993 * 119.99957 * 180.02562 * 17 16 14 36 36 H 1.09002 * 109.46448 * 65.82121 * 22 8 7 37 37 H 1.08994 * 109.45958 * 305.84487 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5415 2.1250 0.0005 5 7 3.8392 3.4112 0.0000 6 6 2.8763 4.3154 -0.0005 7 6 1.5437 3.9156 0.0001 8 7 0.5314 4.8682 0.0000 9 6 0.6772 5.7903 1.1334 10 6 -0.3626 6.9075 1.0206 11 6 -1.7655 6.2937 1.0148 12 6 -1.8751 5.3012 -0.1460 13 1 -1.7398 5.8289 -1.0901 14 6 -3.2332 4.6486 -0.1244 15 1 -3.9490 4.9164 0.6386 16 6 -3.5621 3.7095 -1.0789 17 7 -2.6903 3.3830 -2.0080 18 14 -5.2458 2.9010 -1.0526 19 1 -6.2964 3.9407 -1.1953 20 1 -5.3491 1.9360 -2.1767 21 1 -5.4305 2.1840 0.2346 22 6 -0.7914 4.2306 0.0013 23 7 1.2399 2.6233 0.0057 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 4.3315 1.3886 0.0014 28 1 3.1239 5.3667 -0.0005 29 1 1.6776 6.2229 1.1233 30 1 0.5262 5.2465 2.0659 31 1 -0.2036 7.4605 0.0949 32 1 -0.2646 7.5832 1.8703 33 1 -2.5077 7.0823 0.8910 34 1 -1.9392 5.7733 1.9567 35 1 -2.9217 2.7227 -2.6796 36 1 -0.9352 3.6943 0.9393 37 1 -0.8576 3.5302 -0.8313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596330608.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:44 Heat of formation + Delta-G solvation = 48.016126 kcal Electronic energy + Delta-G solvation = -20056.400584 eV Core-core repulsion = 17152.765427 eV Total energy + Delta-G solvation = -2903.635157 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.84833 -38.21444 -34.36087 -33.59514 -32.39055 -29.76036 -29.61965 -28.65725 -25.49249 -24.67028 -24.11890 -21.96586 -21.56962 -18.92582 -17.81478 -17.21879 -16.55883 -16.40711 -15.52912 -14.96474 -14.54853 -14.17202 -13.99658 -13.57394 -13.32785 -13.04096 -12.99750 -12.68076 -12.44867 -12.33821 -11.98703 -11.30743 -11.10594 -11.01337 -10.88362 -10.62010 -10.55330 -10.33818 -10.31736 -10.09948 -9.57984 -9.17203 -9.06595 -8.77513 -8.43476 -8.02380 -7.34917 -6.06849 -4.14336 0.98078 1.43157 1.56182 2.34299 3.25846 3.31414 3.33637 3.77586 4.05409 4.36780 4.56417 4.78122 4.93521 5.26045 5.35007 5.39458 5.39922 5.44447 5.47983 5.50528 5.70468 5.91892 6.14406 6.17635 6.27321 6.34584 6.53255 6.59488 6.74025 6.89386 6.98682 7.18276 7.51576 7.62815 7.78799 7.88544 8.01632 8.07716 8.36985 8.89544 9.51081 10.98456 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014605 B = 0.007320 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.731721 B = 3824.264570 C = 5434.730162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.079 6.079 3 C 0.103 3.897 4 C 0.017 3.983 5 N -0.406 5.406 6 C 0.012 3.988 7 C 0.304 3.696 8 N -0.469 5.469 9 C 0.064 3.936 10 C -0.116 4.116 11 C -0.115 4.115 12 C 0.050 3.950 13 H 0.035 0.965 14 C -0.517 4.517 15 H 0.057 0.943 16 C 0.065 3.935 17 N -0.884 5.884 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.071 3.929 23 N -0.473 5.473 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.165 0.835 28 H 0.167 0.833 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.262 0.738 36 H 0.023 0.977 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.043 -1.948 5.088 10.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S 0.159 5.841 3 C -0.150 4.150 4 C -0.150 4.150 5 N -0.120 5.120 6 C -0.156 4.156 7 C 0.065 3.935 8 N -0.185 5.185 9 C -0.061 4.061 10 C -0.154 4.154 11 C -0.153 4.153 12 C 0.031 3.969 13 H 0.053 0.947 14 C -0.556 4.556 15 H 0.075 0.925 16 C -0.137 4.137 17 N -0.522 5.522 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.054 4.054 23 N -0.198 5.198 24 H 0.107 0.893 25 H 0.115 0.885 26 H 0.119 0.881 27 H 0.182 0.818 28 H 0.184 0.816 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.042 0.958 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.661 -2.760 4.516 11.016 hybrid contribution -1.916 0.180 0.419 1.969 sum 7.745 -2.580 4.935 9.539 Atomic orbital electron populations 1.23493 0.92329 1.05873 1.07899 1.85162 1.09217 0.98693 1.91064 1.24022 0.93232 0.99153 0.98608 1.22969 0.94253 0.93464 1.04284 1.68246 1.35476 1.01299 1.06964 1.23137 0.88090 1.00338 1.04062 1.21105 0.92577 0.88759 0.91090 1.59244 1.05134 1.15213 1.38898 1.22199 0.99903 0.93920 0.90107 1.21650 0.95899 0.96319 1.01557 1.21736 0.93887 0.99224 1.00447 1.18770 0.93088 0.91459 0.93564 0.94698 1.21074 0.98634 1.22955 1.12892 0.92513 1.24989 0.96921 0.96615 0.95206 1.69858 1.34294 1.32610 1.15452 0.86690 0.84694 0.79312 0.77527 1.20206 1.21244 1.20311 1.22585 0.81717 0.98759 1.02289 1.68915 1.33890 1.01184 1.15768 0.89277 0.88531 0.88106 0.81757 0.81559 0.91029 0.94221 0.91303 0.92182 0.92783 0.93480 0.92836 0.95827 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 10.04 101.05 1.01 -0.86 16 2 S -0.08 -1.13 22.57 -107.50 -2.43 -3.55 16 3 C 0.10 1.75 7.00 -16.76 -0.12 1.63 16 4 C 0.02 0.26 10.97 -17.10 -0.19 0.08 16 5 N -0.41 -6.60 10.48 -12.68 -0.13 -6.73 16 6 C 0.01 0.19 10.33 -17.11 -0.18 0.02 16 7 C 0.30 5.78 6.39 -154.73 -0.99 4.80 16 8 N -0.47 -9.30 4.68 -173.14 -0.81 -10.11 16 9 C 0.06 1.05 5.25 -3.84 -0.02 1.03 16 10 C -0.12 -1.88 6.09 -26.65 -0.16 -2.04 16 11 C -0.12 -2.27 5.23 -26.61 -0.14 -2.41 16 12 C 0.05 1.21 2.26 -91.68 -0.21 1.00 16 13 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 14 C -0.52 -13.68 8.57 -34.44 -0.29 -13.98 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 17 N -0.88 -24.49 11.33 55.43 0.63 -23.86 16 18 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 C 0.07 1.66 3.71 -3.83 -0.01 1.65 16 23 N -0.47 -9.28 7.96 -11.10 -0.09 -9.37 16 24 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 25 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 26 H 0.10 1.19 8.14 -51.92 -0.42 0.76 16 27 H 0.17 2.02 8.06 -52.49 -0.42 1.60 16 28 H 0.17 2.29 7.14 -52.48 -0.37 1.92 16 29 H 0.07 0.97 6.68 -51.93 -0.35 0.62 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 36 H 0.02 0.57 8.12 -51.93 -0.42 0.15 16 37 H 0.12 3.18 5.67 -51.93 -0.29 2.89 16 LS Contribution 314.02 15.07 4.73 4.73 Total: -1.00 -28.35 314.02 -9.71 -38.07 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.21 Total: 2.62 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.39 Total: -7.45 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.40 Total: -50.08 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -2.43 Total: -3.55 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.35 -9.71 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330608.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.083 kcal (2) G-P(sol) polarization free energy of solvation -28.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds