Wall clock time and date at job start Tue Mar 31 2020 01:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76195 * 102.99844 * 2 1 4 4 C 1.39235 * 120.04721 * 179.97438 * 3 2 1 5 5 N 1.32013 * 120.07764 * 179.97438 * 4 3 2 6 6 C 1.32087 * 120.17276 * 0.02562 * 5 4 3 7 7 C 1.39132 * 120.10075 * 0.02562 * 6 5 4 8 8 N 1.38997 * 120.04083 * 179.97438 * 7 6 5 9 9 C 1.46830 * 110.98264 * 304.21699 * 8 7 6 10 10 C 1.53038 * 109.51757 * 174.15535 * 9 8 7 11 11 C 1.53127 * 109.27941 * 59.17550 * 10 9 8 12 12 C 1.53117 * 109.15989 * 302.34585 * 11 10 9 13 13 H 1.09001 * 109.50874 * 297.71787 * 12 11 10 14 14 C 1.50701 * 109.53492 * 177.61137 * 12 11 10 15 15 H 1.07991 * 119.99887 * 0.18211 * 14 12 11 16 16 C 1.37877 * 120.00095 * 180.17846 * 14 12 11 17 17 N 1.31523 * 120.00030 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00172 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47350 * 59.99932 * 18 16 14 20 20 H 1.48503 * 109.47090 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47151 * 299.99729 * 18 16 14 22 22 C 1.46847 * 111.00193 * 180.02562 * 8 7 6 23 23 N 1.32752 * 119.92353 * 0.23103 * 7 6 5 24 24 H 1.08996 * 109.47086 * 299.99857 * 1 2 3 25 25 H 1.09004 * 109.46770 * 59.99976 * 1 2 3 26 26 H 1.09005 * 109.47209 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.96218 * 359.97438 * 4 3 2 28 28 H 1.08007 * 119.94743 * 179.97438 * 6 5 4 29 29 H 1.08995 * 109.46742 * 54.13772 * 9 8 7 30 30 H 1.09004 * 109.46459 * 294.16602 * 9 8 7 31 31 H 1.08997 * 109.50308 * 299.23764 * 10 9 8 32 32 H 1.09000 * 109.50697 * 179.11489 * 10 9 8 33 33 H 1.08997 * 109.52581 * 182.44219 * 11 10 9 34 34 H 1.09004 * 109.51868 * 62.24855 * 11 10 9 35 35 H 0.96993 * 119.99957 * 180.02562 * 17 16 14 36 36 H 1.09002 * 109.46448 * 65.82121 * 22 8 7 37 37 H 1.08994 * 109.45958 * 305.84487 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5415 2.1250 0.0005 5 7 3.8392 3.4112 0.0000 6 6 2.8763 4.3154 -0.0005 7 6 1.5437 3.9156 0.0001 8 7 0.5314 4.8682 0.0000 9 6 0.6772 5.7903 1.1334 10 6 -0.3626 6.9075 1.0206 11 6 -1.7655 6.2937 1.0148 12 6 -1.8751 5.3012 -0.1460 13 1 -1.7398 5.8289 -1.0901 14 6 -3.2332 4.6486 -0.1244 15 1 -3.9490 4.9164 0.6386 16 6 -3.5621 3.7095 -1.0789 17 7 -2.6903 3.3830 -2.0080 18 14 -5.2458 2.9010 -1.0526 19 1 -6.2964 3.9407 -1.1953 20 1 -5.3491 1.9360 -2.1767 21 1 -5.4305 2.1840 0.2346 22 6 -0.7914 4.2306 0.0013 23 7 1.2399 2.6233 0.0057 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 4.3315 1.3886 0.0014 28 1 3.1239 5.3667 -0.0005 29 1 1.6776 6.2229 1.1233 30 1 0.5262 5.2465 2.0659 31 1 -0.2036 7.4605 0.0949 32 1 -0.2646 7.5832 1.8703 33 1 -2.5077 7.0823 0.8910 34 1 -1.9392 5.7733 1.9567 35 1 -2.9217 2.7227 -2.6796 36 1 -0.9352 3.6943 0.9393 37 1 -0.8576 3.5302 -0.8313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596330608.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:44 Heat of formation + Delta-G solvation = 31.025816 kcal Electronic energy + Delta-G solvation = -20057.137340 eV Core-core repulsion = 17152.765427 eV Total energy + Delta-G solvation = -2904.371912 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.19792 -39.71884 -35.92703 -35.15107 -34.03681 -31.47098 -31.01489 -29.88434 -27.27073 -26.14520 -25.59001 -23.44652 -23.14268 -20.55868 -19.23045 -18.61752 -18.22903 -17.77671 -17.06618 -16.48064 -16.29922 -15.48128 -15.43665 -15.09932 -14.75030 -14.55614 -14.39251 -14.16579 -13.97259 -13.68192 -13.52040 -12.89901 -12.74412 -12.54470 -12.43073 -12.24996 -12.20204 -11.83875 -11.80706 -11.67540 -11.20704 -10.93187 -10.85561 -10.48521 -10.14119 -9.46246 -8.58232 -8.11518 -6.26607 -0.31294 0.10096 0.36031 1.11397 1.39147 1.39615 1.47396 2.38478 2.46075 2.68036 3.16133 3.34797 3.51284 3.58162 4.05919 4.07328 4.12557 4.19387 4.24292 4.26848 4.39363 4.50376 4.73891 4.81777 4.85917 4.88562 4.98456 5.09579 5.20318 5.25980 5.32435 5.56878 5.65809 5.89722 6.05741 6.09054 6.33601 6.41112 6.73737 6.85645 7.42197 8.91740 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014605 B = 0.007320 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.731721 B = 3824.264570 C = 5434.730162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.033 6.033 3 C 0.076 3.924 4 C 0.029 3.971 5 N -0.410 5.410 6 C 0.021 3.979 7 C 0.277 3.723 8 N -0.479 5.479 9 C 0.061 3.939 10 C -0.108 4.108 11 C -0.111 4.111 12 C 0.046 3.954 13 H -0.001 1.001 14 C -0.537 4.537 15 H 0.055 0.945 16 C 0.019 3.981 17 N -0.909 5.909 18 Si 0.950 3.050 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.272 1.272 22 C 0.099 3.901 23 N -0.506 5.506 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.133 0.867 27 H 0.199 0.801 28 H 0.195 0.805 29 H 0.109 0.891 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.259 0.741 36 H 0.001 0.999 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.434 -1.924 6.099 12.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.204 5.796 3 C -0.176 4.176 4 C -0.138 4.138 5 N -0.123 5.123 6 C -0.146 4.146 7 C 0.038 3.962 8 N -0.195 5.195 9 C -0.063 4.063 10 C -0.146 4.146 11 C -0.149 4.149 12 C 0.027 3.973 13 H 0.017 0.983 14 C -0.576 4.576 15 H 0.073 0.927 16 C -0.181 4.181 17 N -0.548 5.548 18 Si 0.775 3.225 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.027 4.027 23 N -0.231 5.231 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.151 0.849 27 H 0.216 0.784 28 H 0.212 0.788 29 H 0.127 0.873 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.019 0.981 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.070 -2.722 5.540 12.674 hybrid contribution -2.279 0.101 0.102 2.284 sum 8.790 -2.621 5.641 10.769 Atomic orbital electron populations 1.23455 0.93508 1.07209 1.05516 1.84886 1.07737 0.96399 1.90545 1.24551 0.93761 1.00201 0.99121 1.23532 0.94410 0.93962 1.01900 1.68364 1.35072 1.01624 1.07254 1.23455 0.86779 1.01701 1.02640 1.21305 0.93367 0.88656 0.92840 1.59243 1.03560 1.15792 1.40943 1.22394 1.02013 0.93229 0.88713 1.21624 0.93099 0.96543 1.03294 1.21630 0.96819 0.98257 0.98148 1.18720 0.92532 0.92326 0.93702 0.98251 1.21462 0.99952 1.23311 1.12869 0.92715 1.25723 1.00239 0.97183 0.94938 1.70020 1.35854 1.32972 1.15952 0.85744 0.80683 0.78444 0.77612 1.19576 1.21022 1.19697 1.21925 0.83894 0.97602 0.99313 1.68845 1.35579 1.02127 1.16541 0.90879 0.91585 0.84928 0.78421 0.78787 0.87262 0.94696 0.91329 0.88215 0.92556 0.93740 0.93144 0.98113 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 10.04 113.37 1.14 -2.69 16 2 S -0.03 -0.91 22.57 -56.49 -1.27 -2.19 16 3 C 0.08 2.53 7.00 84.79 0.59 3.12 16 4 C 0.03 0.83 10.97 84.91 0.93 1.76 16 5 N -0.41 -12.34 10.48 -194.04 -2.03 -14.37 16 6 C 0.02 0.66 10.33 84.87 0.88 1.54 16 7 C 0.28 10.49 6.39 132.96 0.85 11.34 16 8 N -0.48 -19.13 4.68 -701.70 -3.29 -22.42 16 9 C 0.06 1.91 5.25 86.33 0.45 2.36 16 10 C -0.11 -3.28 6.09 30.65 0.19 -3.09 16 11 C -0.11 -4.37 5.23 30.68 0.16 -4.21 16 12 C 0.05 2.31 2.26 -11.48 -0.03 2.28 16 13 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 14 C -0.54 -29.42 8.57 25.60 0.22 -29.21 16 15 H 0.05 2.93 7.74 -2.92 -0.02 2.91 16 16 C 0.02 1.04 5.30 84.65 0.45 1.48 16 17 N -0.91 -52.55 11.33 21.45 0.24 -52.30 16 18 Si 0.95 43.30 29.54 68.60 2.03 45.32 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 C 0.10 4.83 3.71 86.33 0.32 5.15 16 23 N -0.51 -20.20 7.96 -189.02 -1.51 -21.71 16 24 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.13 3.01 8.14 -2.39 -0.02 2.99 16 27 H 0.20 4.19 8.06 -2.91 -0.02 4.16 16 28 H 0.20 4.73 7.14 -2.91 -0.02 4.71 16 29 H 0.11 2.57 6.68 -2.39 -0.02 2.56 16 30 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 36 H 0.00 0.03 8.12 -2.39 -0.02 0.01 16 37 H 0.08 4.63 5.67 -2.39 -0.01 4.62 16 Total: -1.00 -64.31 314.02 1.38 -62.93 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 1.06 Total: 14.90 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 6.15 Total: -10.17 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -6.58 Total: -110.80 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -1.27 Total: -2.19 kcal Total: -64.31 1.38 -62.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330608.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.955 kcal (2) G-P(sol) polarization free energy of solvation -64.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds