Wall clock time and date at job start Tue Mar 31 2020 01:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37096 * 119.99725 * 2 1 4 4 H 1.08009 * 119.99726 * 205.60240 * 3 2 1 5 5 C 1.38946 * 120.00388 * 25.59797 * 3 2 1 6 6 N 1.31406 * 120.00042 * 8.29748 * 5 3 2 7 7 Si 1.86802 * 119.99989 * 188.29199 * 5 3 2 8 8 H 1.48506 * 109.47030 * 60.00367 * 7 5 3 9 9 H 1.48496 * 109.47141 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47325 * 300.00210 * 7 5 3 11 11 C 1.34771 * 119.99839 * 179.97438 * 2 1 3 12 12 O 1.21295 * 120.00293 * 3.30000 * 11 2 1 13 13 C 1.50700 * 119.99920 * 183.29341 * 11 2 1 14 14 C 1.52992 * 109.47563 * 283.78119 * 13 11 2 15 15 F 1.39907 * 109.47059 * 42.47387 * 14 13 11 16 16 F 1.39898 * 109.47807 * 162.47476 * 14 13 11 17 17 F 1.39901 * 109.47411 * 282.47734 * 14 13 11 18 18 C 1.52998 * 109.46993 * 43.78104 * 13 11 2 19 19 C 1.53005 * 109.47022 * 59.99835 * 18 13 11 20 20 C 1.53003 * 109.47071 * 60.00405 * 19 18 13 21 21 C 1.53007 * 109.46802 * 299.99823 * 20 19 18 22 22 C 1.52995 * 109.47013 * 59.99883 * 21 20 19 23 23 H 1.08999 * 109.47061 * 174.58746 * 1 2 3 24 24 H 1.09002 * 109.47584 * 294.59471 * 1 2 3 25 25 H 1.09007 * 109.46907 * 54.59421 * 1 2 3 26 26 H 0.97002 * 120.00305 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.47347 * 179.97438 * 18 13 11 28 28 H 1.08992 * 109.47625 * 300.00071 * 18 13 11 29 29 H 1.09000 * 109.47536 * 300.00062 * 19 18 13 30 30 H 1.09005 * 109.46980 * 179.97438 * 19 18 13 31 31 H 1.08997 * 109.47415 * 180.02562 * 20 19 18 32 32 H 1.08990 * 109.47685 * 59.99633 * 20 19 18 33 33 H 1.09000 * 109.46776 * 300.00342 * 21 20 19 34 34 H 1.09000 * 109.47082 * 180.02562 * 21 20 19 35 35 H 1.09003 * 109.47072 * 179.97438 * 22 21 20 36 36 H 1.09000 * 109.46975 * 60.00581 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1510 1.2332 -0.4042 5 6 1.5580 2.3316 0.5199 6 7 0.4120 2.2466 1.1571 7 14 2.3908 3.9909 0.3131 8 1 2.5433 4.2913 -1.1333 9 1 1.5616 5.0440 0.9521 10 1 3.7293 3.9564 0.9553 11 6 2.1389 -1.1672 0.0005 12 8 1.5339 -2.2168 -0.0595 13 6 3.6440 -1.1682 0.0755 14 6 4.2229 -0.7855 -1.2880 15 9 3.4877 0.2766 -1.8253 16 9 5.5585 -0.3981 -1.1356 17 9 4.1518 -1.8850 -2.1501 18 6 4.1029 -0.1558 1.1268 19 6 3.5240 -0.5385 2.4904 20 6 4.0144 -1.9348 2.8789 21 6 3.5554 -2.9473 1.8275 22 6 4.1343 -2.5645 0.4640 23 1 -0.3633 -1.0231 -0.0969 24 1 -0.3634 0.4277 0.9344 25 1 -0.3633 0.5954 -0.8377 26 1 -0.0018 3.0454 1.5197 27 1 5.1916 -0.1568 1.1814 28 1 3.7537 0.8389 0.8501 29 1 2.4354 -0.5378 2.4362 30 1 3.8514 0.1826 3.2394 31 1 3.6017 -2.2077 3.8501 32 1 5.1029 -1.9356 2.9331 33 1 2.4668 -2.9465 1.7733 34 1 3.9044 -3.9421 2.1045 35 1 3.8077 -3.2861 -0.2849 36 1 5.2229 -2.5653 0.5183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597011896.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:52 Heat of formation + Delta-G solvation = -169.012361 kcal Electronic energy + Delta-G solvation = -25062.547343 eV Core-core repulsion = 21132.598762 eV Total energy + Delta-G solvation = -3929.948581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.61721 -47.05561 -47.04147 -39.78829 -36.51217 -35.01909 -31.79719 -31.31872 -30.14964 -26.50149 -25.37207 -24.65815 -22.19622 -21.67957 -20.27978 -18.81563 -17.79443 -17.64677 -17.50507 -17.11557 -15.39458 -14.61509 -14.49493 -14.34105 -13.94107 -13.76889 -13.57968 -13.44783 -13.37222 -13.21293 -13.13312 -13.07410 -12.72835 -12.02095 -11.88333 -11.74686 -11.53942 -11.28457 -11.08643 -11.04319 -10.76478 -10.53309 -10.43702 -10.18614 -10.05933 -9.70727 -9.49668 -8.99672 -8.44653 -7.72293 -6.33317 -4.05567 3.00411 3.14963 3.16667 3.21432 3.77760 3.99656 4.34832 4.50336 4.58934 4.91127 5.06958 5.25521 5.31495 5.48223 5.68203 5.78409 5.87909 5.93909 6.02346 6.18283 6.28120 6.35447 6.51770 6.59834 6.74601 6.75252 6.83266 6.96752 7.06292 7.08433 7.25990 7.50817 7.72593 8.27620 8.96492 9.36375 9.77812 10.55689 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.017705 B = 0.009978 C = 0.009008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.050362 B = 2805.617655 C = 3107.667302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.422 5.422 3 C -0.347 4.347 4 H 0.123 0.877 5 C 0.041 3.959 6 N -0.864 5.864 7 Si 0.914 3.086 8 H -0.271 1.271 9 H -0.281 1.281 10 H -0.268 1.268 11 C 0.465 3.535 12 O -0.595 6.595 13 C -0.098 4.098 14 C 0.455 3.545 15 F -0.158 7.158 16 F -0.189 7.189 17 F -0.187 7.187 18 C -0.146 4.146 19 C -0.104 4.104 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.093 4.093 23 H 0.044 0.956 24 H 0.100 0.900 25 H 0.039 0.961 26 H 0.270 0.730 27 H 0.058 0.942 28 H 0.137 0.863 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.773 -2.679 0.933 7.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.138 5.138 3 C -0.474 4.474 4 H 0.139 0.861 5 C -0.165 4.165 6 N -0.501 5.501 7 Si 0.740 3.260 8 H -0.196 1.196 9 H -0.206 1.206 10 H -0.193 1.193 11 C 0.252 3.748 12 O -0.482 6.482 13 C -0.102 4.102 14 C 0.400 3.600 15 F -0.139 7.139 16 F -0.170 7.170 17 F -0.169 7.169 18 C -0.183 4.183 19 C -0.142 4.142 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.130 4.130 23 H 0.063 0.937 24 H 0.118 0.882 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.154 0.846 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.285 -2.999 0.968 7.031 hybrid contribution 0.500 1.080 -0.426 1.264 sum 6.784 -1.919 0.543 7.071 Atomic orbital electron populations 1.21830 0.80327 0.98932 1.04060 1.43446 1.05863 1.04321 1.60181 1.20300 1.02175 0.85536 1.39398 0.86058 1.25404 0.96188 0.99949 0.94916 1.69852 1.16924 1.29743 1.33579 0.86178 0.79387 0.81350 0.79105 1.19568 1.20635 1.19317 1.19159 0.87023 0.84423 0.84203 1.90519 1.68908 1.31333 1.57421 1.21876 0.97121 1.00124 0.91114 1.20742 0.75727 0.74852 0.88643 1.93227 1.76362 1.56433 1.87866 1.93112 1.36636 1.91397 1.95881 1.93130 1.96095 1.54482 1.73159 1.22453 0.99529 1.02688 0.93592 1.21321 1.02004 0.95215 0.95627 1.21622 1.00014 0.96060 0.98165 1.21538 1.03064 0.97618 0.93206 1.21337 0.99274 0.93309 0.99115 0.93723 0.88190 0.94237 0.91946 0.92297 0.84583 0.90803 0.92175 0.92567 0.92724 0.89736 0.92471 0.90491 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.20 9.30 59.85 0.56 2.75 16 2 N -0.42 -10.30 2.81 -122.19 -0.34 -10.64 16 3 C -0.35 -8.27 5.43 -14.94 -0.08 -8.36 16 4 H 0.12 2.81 3.11 -52.48 -0.16 2.65 16 5 C 0.04 0.98 5.32 -17.47 -0.09 0.89 16 6 N -0.86 -21.29 10.38 55.50 0.58 -20.72 16 7 Si 0.91 18.74 29.56 -169.99 -5.02 13.71 16 8 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 9 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 10 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 11 C 0.47 10.93 4.37 -10.99 -0.05 10.88 16 12 O -0.59 -15.15 13.79 5.54 0.08 -15.07 16 13 C -0.10 -1.96 0.30 -155.67 -0.05 -2.01 16 14 C 0.46 9.04 2.37 37.15 0.09 9.13 16 15 F -0.16 -3.42 12.70 2.25 0.03 -3.39 16 16 F -0.19 -3.40 16.16 2.25 0.04 -3.36 16 17 F -0.19 -3.71 16.16 2.25 0.04 -3.67 16 18 C -0.15 -2.76 3.79 -26.73 -0.10 -2.86 16 19 C -0.10 -1.89 5.70 -26.73 -0.15 -2.04 16 20 C -0.12 -1.89 5.92 -26.73 -0.16 -2.05 16 21 C -0.12 -1.98 5.64 -26.73 -0.15 -2.13 16 22 C -0.09 -1.65 4.02 -26.73 -0.11 -1.76 16 23 H 0.04 1.05 6.91 -51.93 -0.36 0.69 16 24 H 0.10 2.49 5.97 -51.93 -0.31 2.18 16 25 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 27 H 0.06 0.99 7.49 -51.93 -0.39 0.60 16 28 H 0.14 2.84 3.76 -51.93 -0.20 2.65 16 29 H 0.07 1.58 7.12 -51.93 -0.37 1.21 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.69 6.12 -51.93 -0.32 1.37 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.44 7.27 -51.93 -0.38 1.06 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 279.94 15.07 4.22 4.22 Total: -1.00 -25.89 279.94 -4.84 -30.73 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -4.15 Total: 5.73 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -0.30 Total: 2.46 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.23 Total: -31.36 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.08 Total: -15.07 kcal Atomic # 9 Polarization: -10.52 SS G_CDS: 0.10 Total: -10.42 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -25.89 -4.84 -30.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597011896.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.281 kcal (2) G-P(sol) polarization free energy of solvation -25.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds