Wall clock time and date at job start Tue Mar 31 2020 01:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37096 * 119.99725 * 2 1 4 4 H 1.08009 * 119.99726 * 205.60240 * 3 2 1 5 5 C 1.38946 * 120.00388 * 25.59797 * 3 2 1 6 6 N 1.31406 * 120.00042 * 8.29748 * 5 3 2 7 7 Si 1.86802 * 119.99989 * 188.29199 * 5 3 2 8 8 H 1.48506 * 109.47030 * 60.00367 * 7 5 3 9 9 H 1.48496 * 109.47141 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47325 * 300.00210 * 7 5 3 11 11 C 1.34771 * 119.99839 * 179.97438 * 2 1 3 12 12 O 1.21295 * 120.00293 * 3.30000 * 11 2 1 13 13 C 1.50700 * 119.99920 * 183.29341 * 11 2 1 14 14 C 1.52992 * 109.47563 * 283.78119 * 13 11 2 15 15 F 1.39907 * 109.47059 * 42.47387 * 14 13 11 16 16 F 1.39898 * 109.47807 * 162.47476 * 14 13 11 17 17 F 1.39901 * 109.47411 * 282.47734 * 14 13 11 18 18 C 1.52998 * 109.46993 * 43.78104 * 13 11 2 19 19 C 1.53005 * 109.47022 * 59.99835 * 18 13 11 20 20 C 1.53003 * 109.47071 * 60.00405 * 19 18 13 21 21 C 1.53007 * 109.46802 * 299.99823 * 20 19 18 22 22 C 1.52995 * 109.47013 * 59.99883 * 21 20 19 23 23 H 1.08999 * 109.47061 * 174.58746 * 1 2 3 24 24 H 1.09002 * 109.47584 * 294.59471 * 1 2 3 25 25 H 1.09007 * 109.46907 * 54.59421 * 1 2 3 26 26 H 0.97002 * 120.00305 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.47347 * 179.97438 * 18 13 11 28 28 H 1.08992 * 109.47625 * 300.00071 * 18 13 11 29 29 H 1.09000 * 109.47536 * 300.00062 * 19 18 13 30 30 H 1.09005 * 109.46980 * 179.97438 * 19 18 13 31 31 H 1.08997 * 109.47415 * 180.02562 * 20 19 18 32 32 H 1.08990 * 109.47685 * 59.99633 * 20 19 18 33 33 H 1.09000 * 109.46776 * 300.00342 * 21 20 19 34 34 H 1.09000 * 109.47082 * 180.02562 * 21 20 19 35 35 H 1.09003 * 109.47072 * 179.97438 * 22 21 20 36 36 H 1.09000 * 109.46975 * 60.00581 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1510 1.2332 -0.4042 5 6 1.5580 2.3316 0.5199 6 7 0.4120 2.2466 1.1571 7 14 2.3908 3.9909 0.3131 8 1 2.5433 4.2913 -1.1333 9 1 1.5616 5.0440 0.9521 10 1 3.7293 3.9564 0.9553 11 6 2.1389 -1.1672 0.0005 12 8 1.5339 -2.2168 -0.0595 13 6 3.6440 -1.1682 0.0755 14 6 4.2229 -0.7855 -1.2880 15 9 3.4877 0.2766 -1.8253 16 9 5.5585 -0.3981 -1.1356 17 9 4.1518 -1.8850 -2.1501 18 6 4.1029 -0.1558 1.1268 19 6 3.5240 -0.5385 2.4904 20 6 4.0144 -1.9348 2.8789 21 6 3.5554 -2.9473 1.8275 22 6 4.1343 -2.5645 0.4640 23 1 -0.3633 -1.0231 -0.0969 24 1 -0.3634 0.4277 0.9344 25 1 -0.3633 0.5954 -0.8377 26 1 -0.0018 3.0454 1.5197 27 1 5.1916 -0.1568 1.1814 28 1 3.7537 0.8389 0.8501 29 1 2.4354 -0.5378 2.4362 30 1 3.8514 0.1826 3.2394 31 1 3.6017 -2.2077 3.8501 32 1 5.1029 -1.9356 2.9331 33 1 2.4668 -2.9465 1.7733 34 1 3.9044 -3.9421 2.1045 35 1 3.8077 -3.2861 -0.2849 36 1 5.2229 -2.5653 0.5183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597011896.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:51 Heat of formation + Delta-G solvation = -182.303650 kcal Electronic energy + Delta-G solvation = -25063.123696 eV Core-core repulsion = 21132.598762 eV Total energy + Delta-G solvation = -3930.524934 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.20129 -48.67608 -48.58517 -41.47873 -38.13007 -36.89608 -33.53068 -32.91782 -31.61120 -28.36982 -26.99660 -26.37777 -23.63455 -23.28451 -21.84023 -20.55033 -19.37648 -19.23150 -19.11183 -18.84616 -17.11539 -16.37706 -16.15760 -15.94933 -15.52923 -15.33928 -15.23918 -15.02398 -14.89717 -14.75657 -14.72790 -14.68524 -14.32663 -13.77255 -13.43174 -13.28719 -13.08276 -12.95686 -12.71244 -12.62358 -12.55484 -12.11627 -12.07638 -11.73613 -11.45453 -11.21657 -11.10859 -10.67254 -10.26791 -9.61074 -8.16163 -5.92897 1.34120 1.48795 1.56087 1.59532 2.06865 2.28909 2.67582 2.84511 3.03436 3.20544 3.34972 3.77625 3.84776 4.08910 4.24821 4.36456 4.39237 4.51527 4.62095 4.75674 4.83647 4.90882 4.97089 5.03963 5.17117 5.27744 5.37528 5.38373 5.39457 5.52255 5.62695 5.64620 5.87220 6.40650 7.11585 7.50797 7.92325 8.74658 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.017705 B = 0.009978 C = 0.009008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.050362 B = 2805.617655 C = 3107.667302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.435 5.435 3 C -0.353 4.353 4 H 0.132 0.868 5 C 0.003 3.997 6 N -0.891 5.891 7 Si 0.970 3.030 8 H -0.272 1.272 9 H -0.282 1.282 10 H -0.253 1.253 11 C 0.459 3.541 12 O -0.622 6.622 13 C -0.097 4.097 14 C 0.456 3.544 15 F -0.171 7.171 16 F -0.173 7.173 17 F -0.188 7.188 18 C -0.143 4.143 19 C -0.102 4.102 20 C -0.114 4.114 21 C -0.115 4.115 22 C -0.092 4.092 23 H 0.039 0.961 24 H 0.090 0.910 25 H 0.033 0.967 26 H 0.270 0.730 27 H 0.089 0.911 28 H 0.116 0.884 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.343 -2.526 1.536 9.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.151 5.151 3 C -0.480 4.480 4 H 0.148 0.852 5 C -0.200 4.200 6 N -0.529 5.529 7 Si 0.793 3.207 8 H -0.198 1.198 9 H -0.208 1.208 10 H -0.177 1.177 11 C 0.247 3.753 12 O -0.511 6.511 13 C -0.101 4.101 14 C 0.401 3.599 15 F -0.153 7.153 16 F -0.154 7.154 17 F -0.169 7.169 18 C -0.180 4.180 19 C -0.140 4.140 20 C -0.151 4.151 21 C -0.153 4.153 22 C -0.130 4.130 23 H 0.058 0.942 24 H 0.108 0.892 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.134 0.866 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.868 -2.849 1.571 9.446 hybrid contribution -0.332 0.979 -0.627 1.209 sum 8.536 -1.870 0.944 8.789 Atomic orbital electron populations 1.21644 0.81107 0.98264 1.03223 1.43661 1.05810 1.05146 1.60443 1.20589 1.02583 0.85415 1.39363 0.85153 1.26130 0.96657 1.02717 0.94525 1.69955 1.18103 1.30413 1.34445 0.85321 0.79120 0.77473 0.78790 1.19775 1.20769 1.17684 1.19763 0.88790 0.83637 0.83121 1.90492 1.70094 1.32160 1.58321 1.21911 0.94323 1.02183 0.91683 1.20682 0.76255 0.74511 0.88416 1.93192 1.76901 1.57133 1.88026 1.93138 1.35267 1.91225 1.95780 1.93132 1.96148 1.54441 1.73191 1.22397 1.01210 1.00964 0.93387 1.21287 0.99337 0.97557 0.95819 1.21592 1.01760 0.93648 0.98089 1.21512 1.00647 0.99742 0.93377 1.21422 1.01121 0.91302 0.99138 0.94193 0.89218 0.94801 0.91987 0.89270 0.86640 0.95039 0.90705 0.91312 0.89699 0.93619 0.89637 0.91816 0.88561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 5.04 9.30 127.77 1.19 6.23 16 2 N -0.44 -21.61 2.81 -658.87 -1.85 -23.46 16 3 C -0.35 -16.82 5.43 84.04 0.46 -16.37 16 4 H 0.13 5.93 3.11 -2.91 -0.01 5.92 16 5 C 0.00 0.12 5.32 84.93 0.45 0.57 16 6 N -0.89 -44.61 10.38 21.66 0.22 -44.39 16 7 Si 0.97 37.70 29.56 68.60 2.03 39.73 16 8 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 9 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 10 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 11 C 0.46 21.76 4.37 87.66 0.38 22.14 16 12 O -0.62 -32.42 13.79 -3.08 -0.04 -32.46 16 13 C -0.10 -3.73 0.30 -52.93 -0.02 -3.75 16 14 C 0.46 17.34 2.37 71.98 0.17 17.51 16 15 F -0.17 -7.28 12.70 44.97 0.57 -6.71 16 16 F -0.17 -5.68 16.16 44.97 0.73 -4.95 16 17 F -0.19 -7.17 16.16 44.97 0.73 -6.45 16 18 C -0.14 -5.07 3.79 30.60 0.12 -4.95 16 19 C -0.10 -3.53 5.70 30.60 0.17 -3.35 16 20 C -0.11 -3.19 5.92 30.60 0.18 -3.00 16 21 C -0.12 -3.66 5.64 30.60 0.17 -3.49 16 22 C -0.09 -3.06 4.02 30.59 0.12 -2.94 16 23 H 0.04 1.97 6.91 -2.39 -0.02 1.95 16 24 H 0.09 4.67 5.97 -2.39 -0.01 4.65 16 25 H 0.03 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 27 H 0.09 2.62 7.49 -2.39 -0.02 2.60 16 28 H 0.12 4.64 3.76 -2.39 -0.01 4.63 16 29 H 0.03 1.34 7.12 -2.39 -0.02 1.32 16 30 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.82 6.12 -2.39 -0.01 1.80 16 34 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.06 2.28 7.27 -2.39 -0.02 2.26 16 36 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -55.97 279.94 6.90 -49.07 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 1.12 Total: 21.02 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 3.40 Total: 8.59 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: -1.62 Total: -67.85 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -0.04 Total: -32.46 kcal Atomic # 9 Polarization: -20.13 SS G_CDS: 2.02 Total: -18.11 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Total: -55.97 6.90 -49.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597011896.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.235 kcal (2) G-P(sol) polarization free energy of solvation -55.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds