Wall clock time and date at job start Tue Mar 31 2020 01:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46806 * 2 1 4 4 C 1.50703 * 109.47252 * 119.99601 * 2 1 3 5 5 O 1.21287 * 119.99605 * 34.95438 * 4 2 1 6 6 N 1.34774 * 120.00444 * 214.95100 * 4 2 1 7 7 C 1.46931 * 120.62754 * 354.77635 * 6 4 2 8 8 C 1.53193 * 108.77373 * 233.58605 * 7 6 4 9 9 C 1.53040 * 109.30905 * 305.36331 * 8 7 6 10 10 C 1.53042 * 109.53875 * 61.37046 * 9 8 7 11 11 H 1.08993 * 109.50013 * 58.61527 * 10 9 8 12 12 C 1.50704 * 109.49667 * 178.68205 * 10 9 8 13 13 H 1.07996 * 120.00263 * 120.00105 * 12 10 9 14 14 C 1.37878 * 119.99904 * 299.72127 * 12 10 9 15 15 N 1.31512 * 119.99853 * 180.02562 * 14 12 10 16 16 Si 1.86805 * 119.99975 * 0.02562 * 14 12 10 17 17 H 1.48499 * 109.46710 * 90.00064 * 16 14 12 18 18 H 1.48499 * 109.46912 * 210.00241 * 16 14 12 19 19 H 1.48502 * 109.46990 * 329.99998 * 16 14 12 20 20 C 1.46919 * 120.63086 * 174.75006 * 6 4 2 21 21 C 1.52997 * 109.47099 * 240.00033 * 2 1 3 22 22 F 1.39899 * 109.47222 * 299.99544 * 21 2 1 23 23 F 1.39897 * 109.47384 * 59.99750 * 21 2 1 24 24 F 1.39901 * 109.47063 * 180.02562 * 21 2 1 25 25 H 1.09001 * 109.46927 * 64.97560 * 1 2 3 26 26 H 1.09003 * 109.46669 * 184.97139 * 1 2 3 27 27 H 1.09004 * 109.47144 * 304.97200 * 1 2 3 28 28 H 1.08997 * 109.58715 * 113.79784 * 7 6 4 29 29 H 1.09004 * 109.58433 * 353.37102 * 7 6 4 30 30 H 1.08997 * 109.49569 * 185.41591 * 8 7 6 31 31 H 1.09000 * 109.52573 * 65.33038 * 8 7 6 32 32 H 1.08995 * 109.46341 * 301.34499 * 9 8 7 33 33 H 1.09005 * 109.45964 * 181.38837 * 9 8 7 34 34 H 0.97002 * 119.99842 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.59172 * 6.62861 * 20 6 4 36 36 H 1.08998 * 109.58880 * 246.20036 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 1.4228 -1.6608 1.6733 6 7 3.1590 -0.2895 1.8389 7 6 3.9699 0.7858 1.2516 8 6 5.4145 0.2949 1.1139 9 6 5.9135 -0.1974 2.4744 10 6 5.0479 -1.3690 2.9438 11 1 5.0912 -2.1712 2.2073 12 6 5.5601 -1.8738 4.2681 13 1 4.9170 -1.8624 5.1357 14 6 6.8479 -2.3556 4.3709 15 7 7.2946 -2.7966 5.5265 16 14 7.9579 -2.3820 2.8687 17 1 8.7081 -1.1031 2.7851 18 1 8.9157 -3.5113 2.9808 19 1 7.1324 -2.5525 1.6461 20 6 3.5992 -0.8969 3.1022 21 6 2.0400 -0.7212 -1.2492 22 9 1.5738 -2.0402 -1.2492 23 9 1.5737 -0.0618 -2.3915 24 9 3.4390 -0.7217 -1.2489 25 1 -0.3633 0.4347 -0.9312 26 1 -0.3633 -1.0239 0.0891 27 1 -0.3633 0.5891 0.8421 28 1 3.9417 1.6609 1.9008 29 1 3.5767 1.0447 0.2685 30 1 6.0458 1.1139 0.7695 31 1 5.4544 -0.5228 0.3942 32 1 5.8507 0.6139 3.1995 33 1 6.9495 -0.5244 2.3846 34 1 8.2007 -3.1353 5.5989 35 1 2.9614 -1.7482 3.3402 36 1 3.5407 -0.1590 3.9023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597909490.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:09 Heat of formation + Delta-G solvation = -191.859131 kcal Electronic energy + Delta-G solvation = -23611.749424 eV Core-core repulsion = 19680.810133 eV Total energy + Delta-G solvation = -3930.939291 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.25093 -47.76509 -47.65610 -40.10411 -37.30329 -34.22299 -33.34982 -31.82833 -30.62272 -26.78318 -25.58828 -25.13061 -22.97386 -21.78042 -20.10005 -19.08394 -18.74328 -18.42722 -17.53530 -17.03789 -16.72545 -15.49525 -15.02778 -14.58202 -14.57685 -14.39598 -14.12737 -14.06457 -13.81394 -13.73358 -13.67106 -13.30221 -13.17237 -12.96412 -12.60081 -12.53691 -12.30005 -12.02286 -11.64458 -11.27898 -11.19799 -10.71300 -10.39280 -10.20500 -9.89727 -9.80593 -9.41266 -9.06785 -8.59977 -8.25265 -6.12826 -4.13309 2.14115 2.88833 3.02500 3.21911 3.35475 3.37117 3.63404 3.81420 3.92013 4.36134 4.44313 4.63306 4.67555 5.03490 5.17660 5.25991 5.32171 5.41266 5.48738 5.76547 5.86968 5.91948 5.99132 6.09296 6.32753 6.43304 6.55544 6.66334 6.76190 7.06154 7.39980 7.59619 7.67795 8.19930 8.43281 8.89817 9.48671 11.00031 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.027620 B = 0.005800 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.523775 B = 4826.698076 C = 5129.357193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.165 4.165 3 H 0.132 0.868 4 C 0.513 3.487 5 O -0.520 6.520 6 N -0.597 5.597 7 C 0.106 3.894 8 C -0.139 4.139 9 C -0.123 4.123 10 C 0.004 3.996 11 H 0.032 0.968 12 C -0.515 4.515 13 H 0.077 0.923 14 C 0.073 3.927 15 N -0.898 5.898 16 Si 0.886 3.114 17 H -0.278 1.278 18 H -0.297 1.297 19 H -0.265 1.265 20 C 0.127 3.873 21 C 0.463 3.537 22 F -0.170 7.170 23 F -0.180 7.180 24 F -0.175 7.175 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.265 0.735 35 H 0.088 0.912 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.053 10.253 -13.971 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.187 4.187 3 H 0.150 0.850 4 C 0.297 3.703 5 O -0.396 6.396 6 N -0.329 5.329 7 C -0.016 4.016 8 C -0.177 4.177 9 C -0.160 4.160 10 C -0.015 4.015 11 H 0.050 0.950 12 C -0.554 4.554 13 H 0.095 0.905 14 C -0.129 4.129 15 N -0.535 5.535 16 Si 0.716 3.284 17 H -0.205 1.205 18 H -0.224 1.224 19 H -0.190 1.190 20 C 0.007 3.993 21 C 0.409 3.591 22 F -0.151 7.151 23 F -0.161 7.161 24 F -0.157 7.157 25 H 0.094 0.906 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.208 9.636 -13.635 19.569 hybrid contribution 1.061 0.007 -1.004 1.461 sum -9.147 9.643 -14.638 19.772 Atomic orbital electron populations 1.21728 0.89025 1.05324 1.03756 1.22752 1.01872 1.02603 0.91522 0.85025 1.19662 0.81588 0.84366 0.84646 1.90733 1.57144 1.26601 1.65116 1.48350 1.22533 1.36925 1.25096 1.21820 0.92163 0.89818 0.97845 1.21993 0.94550 1.01046 1.00077 1.21997 0.99755 1.00142 0.94116 1.19480 0.90351 0.93469 0.98207 0.95037 1.20876 0.98730 1.41507 0.94249 0.90540 1.24968 0.97878 0.94433 0.95625 1.69888 1.17431 1.42120 1.24088 0.86858 0.80571 0.76728 0.84209 1.20533 1.22417 1.19016 1.21875 0.97596 0.98010 0.81818 1.20080 0.75815 0.78239 0.85007 1.93243 1.88289 1.36936 1.96671 1.93180 1.88506 1.80789 1.53673 1.93238 1.29381 1.96348 1.96687 0.90632 0.89786 0.90024 0.90901 0.90971 0.91495 0.91714 0.91817 0.93053 0.92546 0.89349 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.70 37.16 0.32 -1.04 16 2 C -0.16 -1.91 2.04 -91.77 -0.19 -2.10 16 3 H 0.13 1.12 6.17 -51.93 -0.32 0.80 16 4 C 0.51 8.28 6.17 -10.99 -0.07 8.21 16 5 O -0.52 -10.22 15.53 5.55 0.09 -10.14 16 6 N -0.60 -9.86 2.97 -172.76 -0.51 -10.37 16 7 C 0.11 1.41 5.61 -3.71 -0.02 1.39 16 8 C -0.14 -2.17 6.08 -26.61 -0.16 -2.33 16 9 C -0.12 -2.45 4.66 -26.69 -0.12 -2.57 16 10 C 0.00 0.10 1.84 -91.65 -0.17 -0.07 16 11 H 0.03 0.78 7.19 -51.93 -0.37 0.41 16 12 C -0.52 -14.06 9.14 -34.44 -0.31 -14.38 16 13 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 14 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 15 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 16 Si 0.89 21.70 24.40 -169.99 -4.15 17.55 16 17 H -0.28 -6.54 6.86 56.52 0.39 -6.15 16 18 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 19 H -0.27 -6.33 6.53 56.52 0.37 -5.96 16 20 C 0.13 2.53 5.66 -3.71 -0.02 2.50 16 21 C 0.46 5.91 2.68 37.16 0.10 6.01 16 22 F -0.17 -2.54 16.55 2.25 0.04 -2.51 16 23 F -0.18 -2.01 16.71 2.25 0.04 -1.97 16 24 F -0.18 -2.45 15.20 2.25 0.03 -2.41 16 25 H 0.07 0.57 7.66 -51.93 -0.40 0.17 16 26 H 0.08 0.96 7.48 -51.93 -0.39 0.57 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.76 4.63 -51.93 -0.24 0.52 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.09 7.88 -51.93 -0.41 0.68 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.11 3.29 -51.93 -0.17 0.94 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.09 1.91 7.00 -51.93 -0.36 1.54 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 292.17 15.07 4.40 4.40 Total: -1.00 -31.36 292.17 -4.41 -35.77 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.38 Total: -1.62 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -0.74 Total: -2.40 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.26 Total: -36.67 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 9 Polarization: -7.00 SS G_CDS: 0.11 Total: -6.89 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.15 Total: 17.55 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.36 -4.41 -35.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909490.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.089 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds