Wall clock time and date at job start Tue Mar 31 2020 01:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46806 * 2 1 4 4 C 1.50703 * 109.47252 * 119.99601 * 2 1 3 5 5 O 1.21287 * 119.99605 * 34.95438 * 4 2 1 6 6 N 1.34774 * 120.00444 * 214.95100 * 4 2 1 7 7 C 1.46931 * 120.62754 * 354.77635 * 6 4 2 8 8 C 1.53193 * 108.77373 * 233.58605 * 7 6 4 9 9 C 1.53040 * 109.30905 * 305.36331 * 8 7 6 10 10 C 1.53042 * 109.53875 * 61.37046 * 9 8 7 11 11 H 1.08993 * 109.50013 * 58.61527 * 10 9 8 12 12 C 1.50704 * 109.49667 * 178.68205 * 10 9 8 13 13 H 1.07996 * 120.00263 * 120.00105 * 12 10 9 14 14 C 1.37878 * 119.99904 * 299.72127 * 12 10 9 15 15 N 1.31512 * 119.99853 * 180.02562 * 14 12 10 16 16 Si 1.86805 * 119.99975 * 0.02562 * 14 12 10 17 17 H 1.48499 * 109.46710 * 90.00064 * 16 14 12 18 18 H 1.48499 * 109.46912 * 210.00241 * 16 14 12 19 19 H 1.48502 * 109.46990 * 329.99998 * 16 14 12 20 20 C 1.46919 * 120.63086 * 174.75006 * 6 4 2 21 21 C 1.52997 * 109.47099 * 240.00033 * 2 1 3 22 22 F 1.39899 * 109.47222 * 299.99544 * 21 2 1 23 23 F 1.39897 * 109.47384 * 59.99750 * 21 2 1 24 24 F 1.39901 * 109.47063 * 180.02562 * 21 2 1 25 25 H 1.09001 * 109.46927 * 64.97560 * 1 2 3 26 26 H 1.09003 * 109.46669 * 184.97139 * 1 2 3 27 27 H 1.09004 * 109.47144 * 304.97200 * 1 2 3 28 28 H 1.08997 * 109.58715 * 113.79784 * 7 6 4 29 29 H 1.09004 * 109.58433 * 353.37102 * 7 6 4 30 30 H 1.08997 * 109.49569 * 185.41591 * 8 7 6 31 31 H 1.09000 * 109.52573 * 65.33038 * 8 7 6 32 32 H 1.08995 * 109.46341 * 301.34499 * 9 8 7 33 33 H 1.09005 * 109.45964 * 181.38837 * 9 8 7 34 34 H 0.97002 * 119.99842 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.59172 * 6.62861 * 20 6 4 36 36 H 1.08998 * 109.58880 * 246.20036 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 1.4228 -1.6608 1.6733 6 7 3.1590 -0.2895 1.8389 7 6 3.9699 0.7858 1.2516 8 6 5.4145 0.2949 1.1139 9 6 5.9135 -0.1974 2.4744 10 6 5.0479 -1.3690 2.9438 11 1 5.0912 -2.1712 2.2073 12 6 5.5601 -1.8738 4.2681 13 1 4.9170 -1.8624 5.1357 14 6 6.8479 -2.3556 4.3709 15 7 7.2946 -2.7966 5.5265 16 14 7.9579 -2.3820 2.8687 17 1 8.7081 -1.1031 2.7851 18 1 8.9157 -3.5113 2.9808 19 1 7.1324 -2.5525 1.6461 20 6 3.5992 -0.8969 3.1022 21 6 2.0400 -0.7212 -1.2492 22 9 1.5738 -2.0402 -1.2492 23 9 1.5737 -0.0618 -2.3915 24 9 3.4390 -0.7217 -1.2489 25 1 -0.3633 0.4347 -0.9312 26 1 -0.3633 -1.0239 0.0891 27 1 -0.3633 0.5891 0.8421 28 1 3.9417 1.6609 1.9008 29 1 3.5767 1.0447 0.2685 30 1 6.0458 1.1139 0.7695 31 1 5.4544 -0.5228 0.3942 32 1 5.8507 0.6139 3.1995 33 1 6.9495 -0.5244 2.3846 34 1 8.2007 -3.1353 5.5989 35 1 2.9614 -1.7482 3.3402 36 1 3.5407 -0.1590 3.9023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597909490.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:07 Heat of formation + Delta-G solvation = -212.862536 kcal Electronic energy + Delta-G solvation = -23612.660200 eV Core-core repulsion = 19680.810133 eV Total energy + Delta-G solvation = -3931.850067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 4.11 seconds Orbital eigenvalues (eV) -51.24703 -48.73684 -48.69556 -41.40537 -38.74889 -35.58702 -34.83554 -33.48137 -32.21149 -27.84562 -27.12411 -26.58810 -24.17602 -23.26086 -21.56275 -20.35581 -19.79847 -19.45687 -18.92908 -18.56267 -18.11645 -16.79816 -16.75060 -15.84862 -15.65858 -15.62363 -15.42063 -15.15403 -15.10824 -14.92318 -14.81749 -14.77524 -14.30877 -14.22591 -14.11236 -13.95035 -13.38747 -13.07063 -12.99508 -12.79902 -12.51670 -12.26674 -12.10693 -11.92430 -11.52602 -11.34698 -11.15413 -10.83430 -10.70385 -9.65562 -8.33293 -6.37869 1.01470 1.25696 1.34436 1.43622 1.76460 1.85758 2.29150 2.66040 2.84451 2.89794 3.01957 3.42139 3.74431 3.76945 4.00018 4.06386 4.18581 4.29206 4.49574 4.59314 4.66822 4.68441 4.71455 4.85100 4.94827 5.04357 5.12488 5.15246 5.34966 5.38533 5.62401 5.71033 6.23564 6.32092 6.68363 6.94226 7.27841 8.83222 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.027620 B = 0.005800 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.523775 B = 4826.698076 C = 5129.357193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.153 4.153 3 H 0.174 0.826 4 C 0.507 3.493 5 O -0.565 6.565 6 N -0.600 5.600 7 C 0.102 3.898 8 C -0.135 4.135 9 C -0.122 4.122 10 C 0.006 3.994 11 H 0.008 0.992 12 C -0.520 4.520 13 H 0.038 0.962 14 C 0.016 3.984 15 N -0.946 5.946 16 Si 0.950 3.050 17 H -0.255 1.255 18 H -0.302 1.302 19 H -0.258 1.258 20 C 0.138 3.862 21 C 0.462 3.538 22 F -0.189 7.189 23 F -0.166 7.166 24 F -0.182 7.182 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.266 0.734 35 H 0.058 0.942 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.238 13.234 -16.830 23.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 H 0.192 0.808 4 C 0.293 3.707 5 O -0.444 6.444 6 N -0.331 5.331 7 C -0.019 4.019 8 C -0.172 4.172 9 C -0.159 4.159 10 C -0.014 4.014 11 H 0.026 0.974 12 C -0.558 4.558 13 H 0.056 0.944 14 C -0.181 4.181 15 N -0.587 5.587 16 Si 0.777 3.223 17 H -0.181 1.181 18 H -0.230 1.230 19 H -0.182 1.182 20 C 0.016 3.984 21 C 0.407 3.593 22 F -0.170 7.170 23 F -0.147 7.147 24 F -0.164 7.164 25 H 0.123 0.877 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.402 12.659 -16.525 23.271 hybrid contribution 1.039 -0.959 -0.052 1.415 sum -9.363 11.700 -16.577 22.346 Atomic orbital electron populations 1.21794 0.87567 1.04439 1.05925 1.22816 1.02968 1.03586 0.88091 0.80841 1.20450 0.80873 0.83816 0.85521 1.90719 1.58387 1.28662 1.66619 1.48384 1.23213 1.37500 1.23997 1.22162 0.90218 0.89261 1.00298 1.21981 0.96697 1.01948 0.96623 1.21868 0.98035 0.98794 0.97207 1.19367 0.92855 0.94266 0.94894 0.97367 1.21206 0.98229 1.41120 0.95283 0.94409 1.25810 0.99603 0.94198 0.98522 1.70037 1.18087 1.43980 1.26546 0.85832 0.78542 0.77429 0.80522 1.18055 1.22995 1.18213 1.21407 0.95230 0.97532 0.84205 1.20247 0.75475 0.77670 0.85894 1.93214 1.88476 1.38522 1.96805 1.93210 1.88276 1.80304 1.52953 1.93226 1.30030 1.96332 1.96780 0.87743 0.92179 0.88636 0.87984 0.87284 0.87566 0.93025 0.91018 0.94650 0.92463 0.92330 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.70 71.98 0.63 -1.65 16 2 C -0.15 -2.99 2.04 -11.54 -0.02 -3.01 16 3 H 0.17 1.90 6.17 -2.38 -0.01 1.88 16 4 C 0.51 15.50 6.17 87.66 0.54 16.04 16 5 O -0.57 -22.43 15.53 -3.05 -0.05 -22.48 16 6 N -0.60 -18.55 2.97 -818.89 -2.43 -20.98 16 7 C 0.10 2.22 5.61 86.36 0.48 2.71 16 8 C -0.13 -3.66 6.08 30.67 0.19 -3.47 16 9 C -0.12 -4.59 4.66 30.62 0.14 -4.45 16 10 C 0.01 0.26 1.84 -11.46 -0.02 0.24 16 11 H 0.01 0.41 7.19 -2.39 -0.02 0.39 16 12 C -0.52 -29.48 9.14 25.60 0.23 -29.25 16 13 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 14 C 0.02 0.94 5.45 84.66 0.46 1.40 16 15 N -0.95 -59.17 13.96 21.45 0.30 -58.87 16 16 Si 0.95 45.17 24.40 68.60 1.67 46.84 16 17 H -0.26 -11.11 6.86 99.48 0.68 -10.43 16 18 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 19 H -0.26 -11.80 6.53 99.48 0.65 -11.15 16 20 C 0.14 5.54 5.66 86.37 0.49 6.02 16 21 C 0.46 10.39 2.68 71.98 0.19 10.58 16 22 F -0.19 -5.43 16.55 44.97 0.74 -4.68 16 23 F -0.17 -3.06 16.71 44.97 0.75 -2.31 16 24 F -0.18 -4.51 15.20 44.97 0.68 -3.82 16 25 H 0.10 1.11 7.66 -2.39 -0.02 1.10 16 26 H 0.06 1.30 7.48 -2.39 -0.02 1.28 16 27 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.11 1.62 4.63 -2.39 -0.01 1.61 16 30 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.05 1.56 7.88 -2.39 -0.02 1.54 16 32 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.04 1.45 3.29 -2.38 -0.01 1.44 16 34 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 35 H 0.06 2.66 7.00 -2.39 -0.02 2.64 16 36 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -72.96 292.17 6.01 -66.95 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: 1.02 Total: 4.18 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 3.31 Total: -4.83 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -2.13 Total: -79.86 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.05 Total: -22.48 kcal Atomic # 9 Polarization: -12.99 SS G_CDS: 2.18 Total: -10.81 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.67 Total: 46.84 kcal Total: -72.96 6.01 -66.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909490.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.911 kcal (2) G-P(sol) polarization free energy of solvation -72.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.11 seconds