Wall clock time and date at job start Tue Mar 31 2020 01:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46690 * 2 1 4 4 C 1.50700 * 109.46802 * 240.00737 * 2 1 3 5 5 O 1.21288 * 119.99808 * 264.86102 * 4 2 1 6 6 N 1.34772 * 120.00515 * 84.86256 * 4 2 1 7 7 C 1.46929 * 120.62870 * 354.91459 * 6 4 2 8 8 C 1.53199 * 108.89094 * 126.46189 * 7 6 4 9 9 C 1.53037 * 109.31281 * 54.56460 * 8 7 6 10 10 C 1.53038 * 109.53729 * 298.63470 * 9 8 7 11 11 H 1.09000 * 109.50111 * 301.38118 * 10 9 8 12 12 C 1.50701 * 109.49887 * 181.32101 * 10 9 8 13 13 H 1.08000 * 119.99763 * 239.99960 * 12 10 9 14 14 C 1.37874 * 120.00201 * 59.99525 * 12 10 9 15 15 N 1.31513 * 119.99902 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99953 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47171 * 90.00146 * 16 14 12 18 18 H 1.48505 * 109.47072 * 209.99947 * 16 14 12 19 19 H 1.48497 * 109.47221 * 330.00015 * 16 14 12 20 20 C 1.46958 * 120.65614 * 174.73207 * 6 4 2 21 21 C 1.52998 * 109.47345 * 120.00337 * 2 1 3 22 22 F 1.39892 * 109.47066 * 179.97438 * 21 2 1 23 23 F 1.39897 * 109.46770 * 300.00085 * 21 2 1 24 24 F 1.39903 * 109.46889 * 59.99835 * 21 2 1 25 25 H 1.09000 * 109.46822 * 180.80059 * 1 2 3 26 26 H 1.09003 * 109.46584 * 300.79876 * 1 2 3 27 27 H 1.09005 * 109.47183 * 60.79766 * 1 2 3 28 28 H 1.08996 * 109.58649 * 6.60302 * 7 6 4 29 29 H 1.08993 * 109.58794 * 246.31937 * 7 6 4 30 30 H 1.08994 * 109.49314 * 174.51524 * 8 7 6 31 31 H 1.09000 * 109.49623 * 294.61261 * 8 7 6 32 32 H 1.09002 * 109.46192 * 58.65306 * 9 8 7 33 33 H 1.08999 * 109.45949 * 178.62921 * 9 8 7 34 34 H 0.97007 * 120.00005 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.47041 * 113.75340 * 20 6 4 36 36 H 1.08999 * 109.71225 * 353.46290 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.3231 -1.8865 -1.1756 6 7 2.1584 -0.0386 -2.3922 7 6 1.7066 1.3551 -2.5038 8 6 2.8607 2.2094 -3.0377 9 6 3.3717 1.6075 -4.3487 10 6 3.8963 0.1929 -4.0922 11 1 4.6949 0.2298 -3.3513 12 6 4.4289 -0.3868 -5.3773 13 1 3.9986 -1.2914 -5.7807 14 6 5.4654 0.2378 -6.0379 15 7 5.9897 1.3392 -5.5463 16 14 6.1251 -0.4804 -7.6311 17 1 5.3775 0.0924 -8.7792 18 1 7.5665 -0.1488 -7.7641 19 1 5.9558 -1.9556 -7.6166 20 6 2.7540 -0.6843 -3.5703 21 6 2.0401 -0.7213 1.2492 22 9 3.4390 -0.7218 1.2488 23 9 1.5738 -0.0618 2.3914 24 9 1.5737 -2.0403 1.2491 25 1 -0.3633 -1.0276 0.0144 26 1 -0.3632 0.5262 0.8828 27 1 -0.3634 0.5014 -0.8971 28 1 1.4046 1.7210 -1.5226 29 1 0.8621 1.4115 -3.1906 30 1 2.5087 3.2253 -3.2167 31 1 3.6687 2.2273 -2.3063 32 1 2.5569 1.5670 -5.0717 33 1 4.1768 2.2272 -4.7433 34 1 6.7192 1.7785 -6.0110 35 1 1.9958 -0.7962 -4.3454 36 1 3.1427 -1.6647 -3.2950 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597909491.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:16 Heat of formation + Delta-G solvation = -201.775039 kcal Electronic energy + Delta-G solvation = -23184.160290 eV Core-core repulsion = 19252.791013 eV Total energy + Delta-G solvation = -3931.369277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = -1.45 seconds Orbital eigenvalues (eV) -50.03041 -47.56751 -47.40790 -39.97250 -36.98887 -34.34332 -33.26884 -31.41961 -30.20577 -26.58716 -25.34812 -25.04216 -22.80668 -21.80595 -20.07543 -18.93829 -18.44315 -18.23844 -17.23918 -16.82596 -16.28796 -15.09483 -15.06174 -14.57098 -14.38585 -14.25625 -13.89902 -13.80408 -13.63755 -13.59970 -13.45599 -13.23867 -13.10247 -12.82351 -12.42757 -12.26540 -12.04583 -11.94555 -11.48630 -11.01613 -10.93224 -10.78165 -10.39063 -10.02561 -9.93889 -9.62307 -9.44038 -8.91019 -8.44872 -8.06647 -6.07096 -4.14442 2.49325 2.82957 3.21412 3.26966 3.34355 3.38646 3.70297 4.04393 4.09632 4.38882 4.59855 4.73462 4.83376 5.17195 5.24427 5.27103 5.37698 5.48579 5.63109 5.78630 5.97410 6.22753 6.26810 6.36945 6.55637 6.67291 6.80954 7.06334 7.22690 7.62771 7.73730 7.87425 8.00409 8.26153 8.37963 8.88875 9.50960 10.98540 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.030567 B = 0.004687 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.785776 B = 5972.892390 C = 6219.135082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.166 4.166 3 H 0.134 0.866 4 C 0.517 3.483 5 O -0.530 6.530 6 N -0.594 5.594 7 C 0.103 3.897 8 C -0.137 4.137 9 C -0.113 4.113 10 C 0.039 3.961 11 H 0.031 0.969 12 C -0.515 4.515 13 H 0.058 0.942 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.118 3.882 21 C 0.471 3.529 22 F -0.177 7.177 23 F -0.185 7.185 24 F -0.167 7.167 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.037 0.963 33 H 0.097 0.903 34 H 0.261 0.739 35 H 0.058 0.942 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.209 2.810 10.751 15.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.189 4.189 3 H 0.151 0.849 4 C 0.302 3.698 5 O -0.407 6.407 6 N -0.325 5.325 7 C -0.019 4.019 8 C -0.175 4.175 9 C -0.151 4.151 10 C 0.020 3.980 11 H 0.049 0.951 12 C -0.554 4.554 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.722 3.278 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.002 4.002 21 C 0.416 3.584 22 F -0.158 7.158 23 F -0.166 7.166 24 F -0.149 7.149 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.893 2.286 10.744 15.471 hybrid contribution 0.539 -0.187 -0.674 0.883 sum -10.355 2.099 10.071 14.596 Atomic orbital electron populations 1.21799 0.89335 1.04726 1.04508 1.22682 1.01377 1.02901 0.91921 0.84872 1.19610 0.79145 0.87118 0.83966 1.90774 1.50363 1.15088 1.84500 1.48235 1.59556 1.13288 1.11428 1.21893 0.97975 0.81293 1.00788 1.22028 0.96974 0.97706 1.00773 1.21646 1.00459 1.00033 0.92996 1.18995 0.91580 0.91091 0.96322 0.95125 1.21048 1.17210 1.10075 1.07037 0.92411 1.24930 0.96218 0.94899 0.97708 1.69865 1.25409 1.18161 1.39305 0.86563 0.78119 0.79603 0.83556 1.20661 1.21211 1.19822 1.22093 0.96478 0.97893 0.83755 1.19848 0.75859 0.78129 0.84518 1.93219 1.29488 1.96401 1.96680 1.93162 1.88588 1.80953 1.53919 1.93220 1.88192 1.36837 1.96605 0.90479 0.90175 0.89759 0.91131 0.91302 0.92176 0.92214 0.94442 0.88462 0.92907 0.92336 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.74 37.16 0.32 -1.05 16 2 C -0.17 -2.10 1.84 -91.77 -0.17 -2.27 16 3 H 0.13 1.38 6.50 -51.93 -0.34 1.04 16 4 C 0.52 8.88 6.54 -10.99 -0.07 8.81 16 5 O -0.53 -11.14 14.62 5.55 0.08 -11.05 16 6 N -0.59 -10.28 2.98 -172.74 -0.51 -10.79 16 7 C 0.10 1.43 5.82 -3.71 -0.02 1.41 16 8 C -0.14 -2.24 6.08 -26.61 -0.16 -2.40 16 9 C -0.11 -2.42 4.96 -26.69 -0.13 -2.55 16 10 C 0.04 0.93 2.25 -91.65 -0.21 0.72 16 11 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 12 C -0.52 -13.61 8.56 -34.44 -0.29 -13.91 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 15 N -0.89 -24.46 11.31 55.43 0.63 -23.83 16 16 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 C 0.12 2.45 5.63 -3.69 -0.02 2.43 16 21 C 0.47 6.66 2.48 37.16 0.09 6.75 16 22 F -0.18 -2.88 16.97 2.25 0.04 -2.84 16 23 F -0.18 -2.26 16.81 2.25 0.04 -2.22 16 24 F -0.17 -2.64 15.42 2.25 0.03 -2.61 16 25 H 0.08 0.80 7.78 -51.93 -0.40 0.39 16 26 H 0.08 0.59 7.82 -51.93 -0.41 0.18 16 27 H 0.08 0.69 7.34 -51.93 -0.38 0.31 16 28 H 0.07 0.73 5.09 -51.93 -0.26 0.47 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 2.38 6.04 -51.93 -0.31 2.07 16 34 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.82 7.05 -51.93 -0.37 1.46 16 LS Contribution 299.72 15.07 4.52 4.52 Total: -1.00 -29.70 299.72 -5.51 -35.21 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -4.55 Total: -1.68 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -0.76 Total: -0.44 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.11 Total: -34.63 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 9 Polarization: -7.78 SS G_CDS: 0.11 Total: -7.67 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.70 -5.51 -35.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909491.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.568 kcal (2) G-P(sol) polarization free energy of solvation -29.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.45 seconds