Wall clock time and date at job start Tue Mar 31 2020 01:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46690 * 2 1 4 4 C 1.50700 * 109.46802 * 240.00737 * 2 1 3 5 5 O 1.21288 * 119.99808 * 264.86102 * 4 2 1 6 6 N 1.34772 * 120.00515 * 84.86256 * 4 2 1 7 7 C 1.46929 * 120.62870 * 354.91459 * 6 4 2 8 8 C 1.53199 * 108.89094 * 126.46189 * 7 6 4 9 9 C 1.53037 * 109.31281 * 54.56460 * 8 7 6 10 10 C 1.53038 * 109.53729 * 298.63470 * 9 8 7 11 11 H 1.09000 * 109.50111 * 301.38118 * 10 9 8 12 12 C 1.50701 * 109.49887 * 181.32101 * 10 9 8 13 13 H 1.08000 * 119.99763 * 239.99960 * 12 10 9 14 14 C 1.37874 * 120.00201 * 59.99525 * 12 10 9 15 15 N 1.31513 * 119.99902 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99953 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47171 * 90.00146 * 16 14 12 18 18 H 1.48505 * 109.47072 * 209.99947 * 16 14 12 19 19 H 1.48497 * 109.47221 * 330.00015 * 16 14 12 20 20 C 1.46958 * 120.65614 * 174.73207 * 6 4 2 21 21 C 1.52998 * 109.47345 * 120.00337 * 2 1 3 22 22 F 1.39892 * 109.47066 * 179.97438 * 21 2 1 23 23 F 1.39897 * 109.46770 * 300.00085 * 21 2 1 24 24 F 1.39903 * 109.46889 * 59.99835 * 21 2 1 25 25 H 1.09000 * 109.46822 * 180.80059 * 1 2 3 26 26 H 1.09003 * 109.46584 * 300.79876 * 1 2 3 27 27 H 1.09005 * 109.47183 * 60.79766 * 1 2 3 28 28 H 1.08996 * 109.58649 * 6.60302 * 7 6 4 29 29 H 1.08993 * 109.58794 * 246.31937 * 7 6 4 30 30 H 1.08994 * 109.49314 * 174.51524 * 8 7 6 31 31 H 1.09000 * 109.49623 * 294.61261 * 8 7 6 32 32 H 1.09002 * 109.46192 * 58.65306 * 9 8 7 33 33 H 1.08999 * 109.45949 * 178.62921 * 9 8 7 34 34 H 0.97007 * 120.00005 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.47041 * 113.75340 * 20 6 4 36 36 H 1.08999 * 109.71225 * 353.46290 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.3231 -1.8865 -1.1756 6 7 2.1584 -0.0386 -2.3922 7 6 1.7066 1.3551 -2.5038 8 6 2.8607 2.2094 -3.0377 9 6 3.3717 1.6075 -4.3487 10 6 3.8963 0.1929 -4.0922 11 1 4.6949 0.2298 -3.3513 12 6 4.4289 -0.3868 -5.3773 13 1 3.9986 -1.2914 -5.7807 14 6 5.4654 0.2378 -6.0379 15 7 5.9897 1.3392 -5.5463 16 14 6.1251 -0.4804 -7.6311 17 1 5.3775 0.0924 -8.7792 18 1 7.5665 -0.1488 -7.7641 19 1 5.9558 -1.9556 -7.6166 20 6 2.7540 -0.6843 -3.5703 21 6 2.0401 -0.7213 1.2492 22 9 3.4390 -0.7218 1.2488 23 9 1.5738 -0.0618 2.3914 24 9 1.5737 -2.0403 1.2491 25 1 -0.3633 -1.0276 0.0144 26 1 -0.3632 0.5262 0.8828 27 1 -0.3634 0.5014 -0.8971 28 1 1.4046 1.7210 -1.5226 29 1 0.8621 1.4115 -3.1906 30 1 2.5087 3.2253 -3.2167 31 1 3.6687 2.2273 -2.3063 32 1 2.5569 1.5670 -5.0717 33 1 4.1768 2.2272 -4.7433 34 1 6.7192 1.7785 -6.0110 35 1 1.9958 -0.7962 -4.3454 36 1 3.1427 -1.6647 -3.2950 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597909491.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:12 Heat of formation + Delta-G solvation = -219.596059 kcal Electronic energy + Delta-G solvation = -23184.933067 eV Core-core repulsion = 19252.791013 eV Total energy + Delta-G solvation = -3932.142055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -51.14887 -48.66937 -48.57545 -41.34522 -38.51837 -35.70638 -34.81630 -32.98176 -31.87480 -27.49973 -27.18693 -26.47736 -24.07873 -23.33766 -21.53619 -20.26576 -19.66534 -19.42418 -18.51883 -18.36073 -17.85949 -16.71103 -16.46322 -16.13493 -15.53888 -15.46296 -15.16151 -15.04183 -14.98968 -14.79082 -14.71126 -14.65571 -14.29358 -14.24134 -13.81251 -13.58421 -13.29728 -12.99228 -12.85880 -12.68736 -12.61493 -12.42031 -11.90068 -11.85437 -11.62307 -11.30813 -10.93167 -10.75039 -10.42498 -9.57770 -8.11365 -6.26197 1.26978 1.40747 1.42690 1.52199 1.63665 1.96416 2.42970 2.63422 2.95703 2.98555 3.15760 3.51302 3.80267 3.86040 4.11024 4.24194 4.32843 4.53847 4.57577 4.64602 4.69974 4.79931 4.86236 4.96728 5.11353 5.11725 5.25408 5.45241 5.53691 5.61670 5.93469 6.14017 6.34013 6.39468 6.82677 6.99703 7.42178 8.92283 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.030567 B = 0.004687 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.785776 B = 5972.892390 C = 6219.135082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.154 4.154 3 H 0.165 0.835 4 C 0.510 3.490 5 O -0.578 6.578 6 N -0.596 5.596 7 C 0.102 3.898 8 C -0.130 4.130 9 C -0.108 4.108 10 C 0.039 3.961 11 H -0.013 1.013 12 C -0.538 4.538 13 H 0.052 0.948 14 C 0.018 3.982 15 N -0.913 5.913 16 Si 0.953 3.047 17 H -0.270 1.270 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.132 3.868 21 C 0.466 3.534 22 F -0.195 7.195 23 F -0.170 7.170 24 F -0.181 7.181 25 H 0.063 0.937 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.062 0.938 34 H 0.261 0.739 35 H 0.067 0.933 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.328 4.371 11.262 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 H 0.182 0.818 4 C 0.297 3.703 5 O -0.458 6.458 6 N -0.327 5.327 7 C -0.019 4.019 8 C -0.168 4.168 9 C -0.146 4.146 10 C 0.020 3.980 11 H 0.005 0.995 12 C -0.576 4.576 13 H 0.070 0.930 14 C -0.181 4.181 15 N -0.552 5.552 16 Si 0.779 3.221 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.198 1.198 20 C 0.009 3.991 21 C 0.411 3.589 22 F -0.176 7.176 23 F -0.151 7.151 24 F -0.162 7.162 25 H 0.082 0.918 26 H 0.128 0.872 27 H 0.124 0.876 28 H 0.136 0.864 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.037 3.877 11.266 17.661 hybrid contribution 1.230 -0.690 -0.802 1.622 sum -11.806 3.187 10.465 16.095 Atomic orbital electron populations 1.21924 0.86312 1.04815 1.07038 1.22752 1.03590 1.03126 0.88176 0.81753 1.20404 0.78102 0.86791 0.84971 1.90753 1.52269 1.17485 1.85303 1.48264 1.59187 1.14753 1.10507 1.22203 0.97223 0.78442 1.04034 1.21942 0.97664 0.99740 0.97468 1.21438 0.99390 0.97818 0.95933 1.18901 0.91483 0.93473 0.94130 0.99514 1.21428 1.17817 1.10090 1.08299 0.92982 1.25655 0.96518 0.95255 1.00662 1.70001 1.25681 1.19055 1.40434 0.85627 0.77475 0.78775 0.80207 1.19558 1.21052 1.19806 1.21606 0.95809 0.96182 0.85459 1.20145 0.75080 0.77896 0.85741 1.93187 1.31159 1.96456 1.96836 1.93189 1.88251 1.80464 1.53218 1.93194 1.88224 1.38080 1.96738 0.91754 0.87207 0.87600 0.86381 0.88868 0.88747 0.93581 0.94114 0.91980 0.92934 0.91475 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.74 71.98 0.63 -1.45 16 2 C -0.15 -3.41 1.84 -11.54 -0.02 -3.43 16 3 H 0.17 2.58 6.50 -2.38 -0.02 2.57 16 4 C 0.51 16.92 6.54 87.66 0.57 17.49 16 5 O -0.58 -24.68 14.62 -3.05 -0.04 -24.72 16 6 N -0.60 -19.77 2.98 -818.82 -2.44 -22.21 16 7 C 0.10 2.41 5.82 86.36 0.50 2.91 16 8 C -0.13 -3.94 6.08 30.67 0.19 -3.76 16 9 C -0.11 -4.58 4.96 30.62 0.15 -4.43 16 10 C 0.04 1.93 2.25 -11.46 -0.03 1.90 16 11 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 12 C -0.54 -29.32 8.56 25.60 0.22 -29.10 16 13 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 14 C 0.02 1.00 5.30 84.65 0.45 1.45 16 15 N -0.91 -51.53 11.31 21.45 0.24 -51.29 16 16 Si 0.95 43.19 29.54 68.60 2.03 45.22 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 20 C 0.13 5.55 5.63 86.36 0.49 6.04 16 21 C 0.47 12.36 2.48 71.98 0.18 12.54 16 22 F -0.19 -6.27 16.97 44.97 0.76 -5.51 16 23 F -0.17 -3.68 16.81 44.97 0.76 -2.92 16 24 F -0.18 -5.61 15.42 44.97 0.69 -4.92 16 25 H 0.06 1.14 7.78 -2.39 -0.02 1.12 16 26 H 0.11 1.01 7.82 -2.39 -0.02 0.99 16 27 H 0.11 1.12 7.34 -2.38 -0.02 1.11 16 28 H 0.12 1.72 5.09 -2.39 -0.01 1.71 16 29 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 3.09 6.04 -2.39 -0.01 3.08 16 34 H 0.26 14.07 8.31 -92.70 -0.77 13.30 16 35 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.05 2.45 7.05 -2.39 -0.02 2.44 16 Total: -1.00 -69.05 299.72 6.42 -62.63 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: 1.10 Total: 3.57 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 3.33 Total: 0.16 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -2.20 Total: -73.50 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.04 Total: -24.72 kcal Atomic # 9 Polarization: -15.56 SS G_CDS: 2.21 Total: -13.35 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -69.05 6.42 -62.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909491.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.971 kcal (2) G-P(sol) polarization free energy of solvation -69.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds