Wall clock time and date at job start Tue Mar 31 2020 00:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29024 * 124.91718 * 2 1 4 4 C 1.31781 * 117.12463 * 179.97438 * 3 2 1 5 5 C 1.33642 * 114.50181 * 0.02562 * 4 3 2 6 6 C 1.50694 * 126.04067 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.47346 * 20.02145 * 6 5 4 8 8 C 1.52993 * 109.47376 * 260.02214 * 6 5 4 9 9 N 1.46902 * 109.47243 * 140.02149 * 6 5 4 10 10 C 1.46900 * 111.00018 * 205.00493 * 9 6 5 11 11 C 1.52999 * 109.47298 * 179.97438 * 10 9 6 12 12 H 1.08996 * 109.47389 * 304.99643 * 11 10 9 13 13 C 1.47205 * 109.47128 * 64.99710 * 11 10 9 14 14 N 7.51626 * 130.97835 * 170.56960 * 2 1 3 15 15 C 1.53000 * 109.47344 * 184.99546 * 11 10 9 16 16 C 1.50699 * 109.47081 * 174.99820 * 15 11 10 17 17 H 1.07996 * 120.00498 * 0.02562 * 16 15 11 18 18 C 1.37879 * 120.00030 * 179.97438 * 16 15 11 19 19 N 1.31515 * 119.99842 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00040 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47093 * 90.00201 * 20 18 16 22 22 H 1.48502 * 109.46916 * 210.00026 * 20 18 16 23 23 H 1.48494 * 109.47191 * 330.00146 * 20 18 16 24 24 S 1.70978 * 124.91472 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47163 * 269.99862 * 1 2 3 26 26 H 1.08997 * 109.46951 * 29.99537 * 1 2 3 27 27 H 1.08999 * 109.47340 * 149.99899 * 1 2 3 28 28 H 1.07997 * 122.75067 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.47578 * 179.97438 * 8 6 5 30 30 H 1.09000 * 109.47192 * 299.99677 * 8 6 5 31 31 H 1.09004 * 109.46945 * 59.99892 * 8 6 5 32 32 H 1.00894 * 110.99985 * 81.04970 * 9 6 5 33 33 H 1.09009 * 109.46839 * 299.99532 * 10 9 6 34 34 H 1.09001 * 109.47681 * 59.99397 * 10 9 6 35 35 H 1.09002 * 109.47281 * 294.99909 * 15 11 10 36 36 H 1.09004 * 109.46991 * 55.00114 * 15 11 10 37 37 H 0.96999 * 119.99980 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 0.0005 5 6 3.9354 -0.4007 0.0004 6 6 5.3574 -0.8995 0.0004 7 1 6.0200 -0.1087 0.3523 8 6 5.7560 -1.3041 -1.4202 9 7 5.4682 -2.0632 0.8902 10 6 6.8420 -2.2170 1.3871 11 6 6.9175 -3.4360 2.3087 12 1 6.1768 -3.3379 3.1023 13 6 6.6455 -4.6562 1.5316 14 7 6.4360 -5.5978 0.9298 15 6 8.3156 -3.5244 2.9240 16 6 8.3538 -4.6508 3.9244 17 1 7.4696 -5.2446 4.1031 18 6 9.5180 -4.9241 4.6107 19 7 10.5949 -4.2013 4.3927 20 14 9.5656 -6.3208 5.8501 21 1 9.9674 -7.5761 5.1660 22 1 10.5480 -6.0023 6.9173 23 1 8.2194 -6.4943 6.4523 24 16 2.4856 -1.4020 -0.0006 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 4.2532 1.7000 0.0010 29 1 6.7847 -1.6645 -1.4203 30 1 5.0936 -2.0950 -1.7721 31 1 5.6738 -0.4407 -2.0804 32 1 5.1548 -2.9032 0.4276 33 1 7.5197 -2.3556 0.5446 34 1 7.1300 -1.3241 1.9419 35 1 9.0473 -3.7113 2.1381 36 1 8.5521 -2.5855 3.4248 37 1 11.4140 -4.3938 4.8753 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601934858.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:37 Heat of formation + Delta-G solvation = 51.146181 kcal Electronic energy + Delta-G solvation = -18482.983631 eV Core-core repulsion = 15579.484203 eV Total energy + Delta-G solvation = -2903.499428 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.81612 -37.92338 -35.98740 -33.92078 -32.68156 -31.65390 -29.75737 -27.73874 -26.33971 -24.23667 -23.10689 -22.10932 -21.63797 -19.52696 -17.94048 -16.83143 -16.61442 -15.85625 -15.19588 -14.93552 -14.85834 -14.40386 -14.10429 -13.54422 -13.43298 -13.13103 -12.93263 -12.88475 -12.59762 -12.40235 -12.13001 -12.05716 -11.77825 -11.68542 -11.27113 -11.18020 -11.06125 -10.79643 -10.56796 -10.31168 -9.73600 -9.58740 -9.30583 -9.22820 -8.85210 -8.49006 -8.45772 -6.12218 -4.15431 0.64307 1.27877 1.73741 2.74463 3.28271 3.34967 3.38355 3.50586 3.56382 3.98997 4.14498 4.39788 4.62393 4.75081 4.86871 4.91372 5.07166 5.19165 5.22454 5.25984 5.41859 5.43981 5.50579 5.59918 5.64451 5.69559 5.92178 6.07733 6.08795 6.29302 6.48911 6.92460 7.24903 7.39797 7.48773 7.65703 7.82743 8.19944 8.34554 8.89049 9.50262 10.98655 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028702 B = 0.003318 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.299538 B = 8435.847581 C = 8594.694007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.025 3.975 3 N -0.475 5.475 4 C 0.028 3.972 5 C -0.193 4.193 6 C 0.158 3.842 7 H 0.103 0.897 8 C -0.180 4.180 9 N -0.686 5.686 10 C 0.068 3.932 11 C 0.007 3.993 12 H 0.112 0.888 13 C 0.240 3.760 14 N -0.475 5.475 15 C 0.033 3.967 16 C -0.527 4.527 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.272 1.272 24 S 0.145 5.855 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.172 0.828 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.340 0.660 33 H 0.039 0.961 34 H 0.094 0.906 35 H 0.024 0.976 36 H 0.040 0.960 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.134 10.693 -10.077 21.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.252 4.252 3 N -0.190 5.190 4 C -0.123 4.123 5 C -0.315 4.315 6 C 0.045 3.955 7 H 0.121 0.879 8 C -0.240 4.240 9 N -0.317 5.317 10 C -0.062 4.062 11 C -0.015 4.015 12 H 0.129 0.871 13 C -0.077 4.077 14 N -0.152 5.152 15 C -0.006 4.006 16 C -0.565 4.565 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.197 1.197 24 S 0.400 5.600 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.189 0.811 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.159 0.841 33 H 0.057 0.943 34 H 0.113 0.887 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.978 9.082 -10.363 21.099 hybrid contribution 1.389 -0.069 0.247 1.413 sum -14.589 9.013 -10.116 19.910 Atomic orbital electron populations 1.20390 0.85531 1.03862 1.03769 1.26999 1.01743 0.91658 1.04844 1.66254 1.04819 1.31793 1.16086 1.21597 0.91082 0.95664 1.03961 1.26003 0.99385 0.96144 1.09940 1.19877 0.89171 0.94680 0.91759 0.87884 1.22540 1.02277 1.02260 0.96874 1.60701 1.24521 1.06072 1.40401 1.22143 0.87369 0.98981 0.97697 1.19338 1.04117 0.83418 0.94666 0.87059 1.29360 0.91247 0.94581 0.92499 1.81080 1.11254 1.11141 1.11727 1.19161 0.86891 0.98708 0.95796 1.21138 0.97181 1.15673 1.22522 0.92492 1.24951 0.95580 0.96414 0.97012 1.69934 1.01466 1.39477 1.42136 0.86588 0.78037 0.82427 0.81019 1.20683 1.21068 1.19691 1.84063 0.97088 1.11633 1.67240 0.89743 0.89576 0.90331 0.81056 0.91366 0.92315 0.91567 0.84114 0.94255 0.88724 0.95729 0.94160 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.46 36.01 0.38 -0.17 16 2 C 0.02 0.27 7.39 -13.46 -0.10 0.17 16 3 N -0.47 -5.88 10.54 -11.86 -0.13 -6.00 16 4 C 0.03 0.32 11.24 -19.18 -0.22 0.10 16 5 C -0.19 -2.15 5.52 -35.92 -0.20 -2.35 16 6 C 0.16 1.67 3.04 -68.87 -0.21 1.46 16 7 H 0.10 0.99 7.79 -51.93 -0.40 0.59 16 8 C -0.18 -1.74 9.14 37.15 0.34 -1.40 16 9 N -0.69 -8.63 6.05 -107.95 -0.65 -9.28 16 10 C 0.07 0.94 4.92 -3.82 -0.02 0.92 16 11 C 0.01 0.12 2.42 -93.41 -0.23 -0.11 16 12 H 0.11 1.93 8.14 -51.93 -0.42 1.50 16 13 C 0.24 4.71 12.98 -20.73 -0.27 4.44 16 14 N -0.48 -10.09 18.54 42.19 0.78 -9.30 16 15 C 0.03 0.75 4.42 -27.88 -0.12 0.62 16 16 C -0.53 -13.87 8.60 -34.44 -0.30 -14.16 16 17 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -25.29 13.29 55.43 0.74 -24.56 16 20 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 24 S 0.15 1.56 22.98 -107.50 -2.47 -0.91 16 25 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.07 0.67 7.45 -51.93 -0.39 0.29 16 30 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.34 4.51 7.55 -39.29 -0.30 4.21 16 33 H 0.04 0.54 7.44 -51.92 -0.39 0.15 16 34 H 0.09 1.21 8.06 -51.93 -0.42 0.80 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 335.23 15.07 5.05 5.05 Total: -1.00 -30.49 335.23 -7.97 -38.46 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -5.23 Total: -0.76 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -1.04 Total: -8.87 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.74 Total: -49.14 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.47 Total: -0.91 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.49 -7.97 -38.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601934858.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.604 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds