Wall clock time and date at job start Tue Mar 31 2020 00:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29024 * 124.91718 * 2 1 4 4 C 1.31781 * 117.12463 * 179.97438 * 3 2 1 5 5 C 1.33642 * 114.50181 * 0.02562 * 4 3 2 6 6 C 1.50694 * 126.04067 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.47346 * 20.02145 * 6 5 4 8 8 C 1.52993 * 109.47376 * 260.02214 * 6 5 4 9 9 N 1.46902 * 109.47243 * 140.02149 * 6 5 4 10 10 C 1.46900 * 111.00018 * 205.00493 * 9 6 5 11 11 C 1.52999 * 109.47298 * 179.97438 * 10 9 6 12 12 H 1.08996 * 109.47389 * 304.99643 * 11 10 9 13 13 C 1.47205 * 109.47128 * 64.99710 * 11 10 9 14 14 N 7.51626 * 130.97835 * 170.56960 * 2 1 3 15 15 C 1.53000 * 109.47344 * 184.99546 * 11 10 9 16 16 C 1.50699 * 109.47081 * 174.99820 * 15 11 10 17 17 H 1.07996 * 120.00498 * 0.02562 * 16 15 11 18 18 C 1.37879 * 120.00030 * 179.97438 * 16 15 11 19 19 N 1.31515 * 119.99842 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00040 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47093 * 90.00201 * 20 18 16 22 22 H 1.48502 * 109.46916 * 210.00026 * 20 18 16 23 23 H 1.48494 * 109.47191 * 330.00146 * 20 18 16 24 24 S 1.70978 * 124.91472 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47163 * 269.99862 * 1 2 3 26 26 H 1.08997 * 109.46951 * 29.99537 * 1 2 3 27 27 H 1.08999 * 109.47340 * 149.99899 * 1 2 3 28 28 H 1.07997 * 122.75067 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.47578 * 179.97438 * 8 6 5 30 30 H 1.09000 * 109.47192 * 299.99677 * 8 6 5 31 31 H 1.09004 * 109.46945 * 59.99892 * 8 6 5 32 32 H 1.00894 * 110.99985 * 81.04970 * 9 6 5 33 33 H 1.09009 * 109.46839 * 299.99532 * 10 9 6 34 34 H 1.09001 * 109.47681 * 59.99397 * 10 9 6 35 35 H 1.09002 * 109.47281 * 294.99909 * 15 11 10 36 36 H 1.09004 * 109.46991 * 55.00114 * 15 11 10 37 37 H 0.96999 * 119.99980 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 0.0005 5 6 3.9354 -0.4007 0.0004 6 6 5.3574 -0.8995 0.0004 7 1 6.0200 -0.1087 0.3523 8 6 5.7560 -1.3041 -1.4202 9 7 5.4682 -2.0632 0.8902 10 6 6.8420 -2.2170 1.3871 11 6 6.9175 -3.4360 2.3087 12 1 6.1768 -3.3379 3.1023 13 6 6.6455 -4.6562 1.5316 14 7 6.4360 -5.5978 0.9298 15 6 8.3156 -3.5244 2.9240 16 6 8.3538 -4.6508 3.9244 17 1 7.4696 -5.2446 4.1031 18 6 9.5180 -4.9241 4.6107 19 7 10.5949 -4.2013 4.3927 20 14 9.5656 -6.3208 5.8501 21 1 9.9674 -7.5761 5.1660 22 1 10.5480 -6.0023 6.9173 23 1 8.2194 -6.4943 6.4523 24 16 2.4856 -1.4020 -0.0006 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 4.2532 1.7000 0.0010 29 1 6.7847 -1.6645 -1.4203 30 1 5.0936 -2.0950 -1.7721 31 1 5.6738 -0.4407 -2.0804 32 1 5.1548 -2.9032 0.4276 33 1 7.5197 -2.3556 0.5446 34 1 7.1300 -1.3241 1.9419 35 1 9.0473 -3.7113 2.1381 36 1 8.5521 -2.5855 3.4248 37 1 11.4140 -4.3938 4.8753 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601934858.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:36 Heat of formation + Delta-G solvation = 32.298546 kcal Electronic energy + Delta-G solvation = -18483.800925 eV Core-core repulsion = 15579.484203 eV Total energy + Delta-G solvation = -2904.316723 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.64519 -39.13720 -37.31082 -35.62206 -34.16557 -32.69879 -30.92079 -28.52696 -27.96427 -25.16971 -24.36850 -23.59190 -22.74895 -20.35363 -18.77509 -18.54289 -18.23867 -16.97386 -16.64438 -15.99770 -15.81217 -15.65227 -14.94468 -14.85453 -14.55998 -14.36348 -14.16670 -13.97589 -13.85970 -13.44587 -13.29421 -13.22247 -13.05438 -12.83948 -12.70138 -12.54644 -12.48320 -12.25899 -12.01827 -11.96650 -11.40789 -11.17787 -10.55318 -10.53530 -10.11743 -9.69560 -9.42078 -8.19616 -6.27416 -0.17004 0.47986 0.92029 1.39850 1.42147 1.51232 1.90691 1.93517 1.96062 2.41407 3.05601 3.15710 3.24463 3.37688 3.81236 4.01289 4.21600 4.25115 4.29276 4.39003 4.59636 4.63814 4.69303 4.71728 4.79405 4.85095 4.97971 5.02127 5.06093 5.16534 5.33383 5.47932 5.63150 5.79559 5.92093 6.20349 6.21823 6.74907 6.84093 6.87599 7.41126 8.91182 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028702 B = 0.003318 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.299538 B = 8435.847581 C = 8594.694007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.025 3.975 3 N -0.502 5.502 4 C 0.022 3.978 5 C -0.202 4.202 6 C 0.161 3.839 7 H 0.117 0.883 8 C -0.175 4.175 9 N -0.688 5.688 10 C 0.079 3.921 11 C 0.018 3.982 12 H 0.121 0.879 13 C 0.250 3.750 14 N -0.503 5.503 15 C 0.039 3.961 16 C -0.539 4.539 17 H 0.053 0.947 18 C 0.012 3.988 19 N -0.923 5.923 20 Si 0.946 3.054 21 H -0.284 1.284 22 H -0.279 1.279 23 H -0.265 1.265 24 S 0.138 5.862 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.189 0.811 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.336 0.664 33 H 0.043 0.957 34 H 0.110 0.890 35 H 0.002 0.998 36 H 0.038 0.962 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.144 11.224 -10.066 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.252 4.252 3 N -0.218 5.218 4 C -0.129 4.129 5 C -0.324 4.324 6 C 0.049 3.951 7 H 0.134 0.866 8 C -0.234 4.234 9 N -0.319 5.319 10 C -0.050 4.050 11 C -0.004 4.004 12 H 0.138 0.862 13 C -0.066 4.066 14 N -0.181 5.181 15 C 0.000 4.000 16 C -0.577 4.577 17 H 0.071 0.929 18 C -0.187 4.187 19 N -0.563 5.563 20 Si 0.772 3.228 21 H -0.210 1.210 22 H -0.204 1.204 23 H -0.189 1.189 24 S 0.392 5.608 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.115 0.885 28 H 0.205 0.795 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.154 0.846 33 H 0.061 0.939 34 H 0.128 0.872 35 H 0.021 0.979 36 H 0.056 0.944 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.001 9.618 -10.355 22.108 hybrid contribution 1.651 -0.215 0.224 1.680 sum -15.350 9.402 -10.131 20.656 Atomic orbital electron populations 1.20566 0.83335 1.05051 1.04785 1.27590 1.03118 0.91150 1.03355 1.66317 1.05428 1.32581 1.17440 1.21905 0.91218 0.96277 1.03515 1.26040 0.99551 0.96182 1.10643 1.19921 0.89301 0.94076 0.91848 0.86557 1.22484 1.01871 1.02544 0.96542 1.60650 1.23394 1.06550 1.41287 1.21986 0.88358 0.97465 0.97234 1.19235 1.01330 0.84334 0.95459 0.86158 1.29702 0.90485 0.94480 0.91931 1.81081 1.12101 1.11992 1.12905 1.18979 0.89159 0.97292 0.94526 1.21564 0.96875 1.16382 1.22925 0.92867 1.25690 0.95553 0.98589 0.98873 1.70022 1.01949 1.40980 1.43303 0.85725 0.78359 0.79569 0.79132 1.21005 1.20408 1.18910 1.84069 0.97373 1.11970 1.67375 0.88685 0.88983 0.88534 0.79460 0.91544 0.92985 0.90315 0.84608 0.93922 0.87171 0.97916 0.94426 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.46 71.24 0.75 -0.22 16 2 C 0.02 0.50 7.39 88.52 0.65 1.15 16 3 N -0.50 -11.79 10.54 -191.44 -2.02 -13.81 16 4 C 0.02 0.46 11.24 83.66 0.94 1.40 16 5 C -0.20 -4.21 5.52 24.64 0.14 -4.07 16 6 C 0.16 3.10 3.04 44.16 0.13 3.23 16 7 H 0.12 1.95 7.79 -2.38 -0.02 1.93 16 8 C -0.18 -3.10 9.14 71.98 0.66 -2.44 16 9 N -0.69 -16.16 6.05 -495.45 -3.00 -19.15 16 10 C 0.08 2.06 4.92 86.30 0.42 2.48 16 11 C 0.02 0.63 2.42 -12.60 -0.03 0.60 16 12 H 0.12 3.98 8.14 -2.39 -0.02 3.96 16 13 C 0.25 9.65 12.98 89.43 1.16 10.81 16 14 N -0.50 -21.13 18.54 20.02 0.37 -20.76 16 15 C 0.04 1.76 4.42 29.85 0.13 1.89 16 16 C -0.54 -28.21 8.60 25.60 0.22 -27.99 16 17 H 0.05 2.76 7.59 -2.91 -0.02 2.74 16 18 C 0.01 0.65 5.46 84.65 0.46 1.11 16 19 N -0.92 -52.44 13.29 21.45 0.28 -52.15 16 20 Si 0.95 43.16 29.54 68.60 2.03 45.18 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 23 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 24 S 0.14 2.80 22.98 -56.49 -1.30 1.50 16 25 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 29 H 0.07 1.20 7.45 -2.39 -0.02 1.18 16 30 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.34 8.46 7.55 -89.70 -0.68 7.79 16 33 H 0.04 1.09 7.44 -2.38 -0.02 1.07 16 34 H 0.11 2.56 8.06 -2.39 -0.02 2.54 16 35 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -63.94 335.23 2.40 -61.54 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.40 Total: 9.71 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 5.64 Total: -12.06 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -4.36 Total: -105.87 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.30 Total: 1.50 kcal Total: -63.94 2.40 -61.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601934858.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.837 kcal (2) G-P(sol) polarization free energy of solvation -63.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds