Wall clock time and date at job start Tue Mar 31 2020 00:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.30907 * 125.08927 * 2 1 4 4 N 1.37484 * 116.32115 * 179.85390 * 3 2 1 5 5 C 1.35149 * 113.93645 * 0.43249 * 4 3 2 6 6 N 1.32356 * 108.82474 * 179.76076 * 5 4 3 7 7 C 1.33867 * 109.13534 * 359.97438 * 6 5 4 8 8 C 1.50704 * 125.80264 * 179.97438 * 7 6 5 9 9 C 1.34328 * 108.39338 * 0.02562 * 7 6 5 10 10 C 1.50699 * 126.44395 * 180.02562 * 9 7 6 11 11 N 1.46905 * 109.47121 * 269.95764 * 10 9 7 12 12 C 1.46907 * 111.00030 * 179.97438 * 11 10 9 13 13 C 1.52990 * 109.47271 * 179.97438 * 12 11 10 14 14 C 1.50693 * 109.47586 * 179.97438 * 13 12 11 15 15 H 1.08010 * 119.99533 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00257 * 180.02562 * 14 13 12 17 17 N 1.31506 * 119.99983 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99836 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47261 * 59.99642 * 18 16 14 20 20 H 1.48501 * 109.46945 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46916 * 299.99646 * 18 16 14 22 22 S 1.75781 * 125.09165 * 180.30620 * 2 1 3 23 23 H 1.09002 * 109.47152 * 179.71762 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.71862 * 1 2 3 25 25 H 1.09004 * 109.47113 * 299.71843 * 1 2 3 26 26 H 1.08005 * 121.84140 * 0.02562 * 3 2 1 27 27 H 1.08995 * 109.47262 * 270.02691 * 8 7 6 28 28 H 1.09004 * 109.47187 * 30.03425 * 8 7 6 29 29 H 1.09005 * 109.46916 * 150.03035 * 8 7 6 30 30 H 1.09007 * 109.47113 * 29.95632 * 10 9 7 31 31 H 1.08998 * 109.47497 * 149.95410 * 10 9 7 32 32 H 1.00897 * 110.99988 * 56.04306 * 11 10 9 33 33 H 1.09001 * 109.47024 * 299.99967 * 12 11 10 34 34 H 1.09004 * 109.46666 * 59.99745 * 12 11 10 35 35 H 1.09007 * 109.46920 * 300.00388 * 13 12 11 36 36 H 1.09005 * 109.47182 * 59.99800 * 13 12 11 37 37 H 0.97006 * 119.99658 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2596 1.0712 0.0000 4 7 3.6183 0.8616 0.0031 5 6 3.9720 -0.4428 -0.0035 6 7 5.2928 -0.5272 -0.0050 7 6 5.8114 0.7070 0.0001 8 6 7.2797 1.0463 0.0009 9 6 4.8004 1.5915 0.0054 10 6 4.9250 3.0933 0.0117 11 7 4.9665 3.5754 1.3987 12 6 5.0885 5.0387 1.4440 13 6 5.1280 5.5024 2.9015 14 6 5.2538 7.0033 2.9480 15 1 5.3013 7.5699 2.0297 16 6 5.3092 7.6532 4.1627 17 7 5.2519 6.9632 5.2808 18 14 5.4644 9.5139 4.2203 19 1 4.2983 10.1293 3.5371 20 1 5.5028 9.9638 5.6350 21 1 6.7150 9.9277 3.5346 22 16 2.5176 -1.4383 -0.0077 23 1 -0.3633 -1.0277 -0.0051 24 1 -0.3633 0.5182 -0.8875 25 1 -0.3633 0.5095 0.8925 26 1 1.8363 2.0648 0.0004 27 1 7.6343 1.1232 1.0287 28 1 7.8339 0.2635 -0.5170 29 1 7.4330 1.9977 -0.5085 30 1 5.8416 3.3840 -0.5017 31 1 4.0677 3.5312 -0.4997 32 1 5.7146 3.1345 1.9126 33 1 6.0064 5.3425 0.9408 34 1 4.2326 5.4903 0.9424 35 1 4.2098 5.1985 3.4044 36 1 5.9837 5.0507 3.4034 37 1 5.2905 7.4205 6.1354 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612192071.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:14 Heat of formation + Delta-G solvation = 79.498721 kcal Electronic energy + Delta-G solvation = -18729.539229 eV Core-core repulsion = 15827.269260 eV Total energy + Delta-G solvation = -2902.269969 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.68721 -37.24253 -36.09461 -33.18538 -32.75552 -31.45910 -29.54291 -28.40766 -26.10612 -25.08590 -23.57509 -22.94475 -20.69396 -20.04894 -19.70803 -18.11593 -16.44701 -16.21370 -16.14999 -15.07073 -14.76517 -14.45997 -14.14283 -14.06496 -13.75208 -13.64158 -13.10164 -12.98627 -12.67213 -12.47634 -12.20367 -12.18614 -11.98823 -11.30429 -11.23747 -11.12167 -10.95191 -10.62272 -10.33294 -10.11205 -10.05534 -9.47201 -9.21957 -8.62519 -8.38987 -7.99689 -7.64429 -6.02932 -4.06281 0.77984 0.82301 1.46705 2.15840 2.50935 2.79645 3.30876 3.35622 3.37557 4.24947 4.41115 4.60737 4.68782 4.75768 4.89847 4.95556 5.17442 5.18337 5.32912 5.36351 5.40269 5.56568 5.61506 5.72460 5.79895 5.88005 6.18818 6.23410 6.32244 6.54014 6.82332 6.88990 7.34623 7.65420 7.70798 7.73384 7.86163 8.02626 8.38170 9.00638 9.57757 11.08365 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022777 B = 0.003473 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.018534 B = 8060.731518 C = 8861.862212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.197 4.197 3 C 0.059 3.941 4 N -0.392 5.392 5 C 0.134 3.866 6 N -0.455 5.455 7 C 0.045 3.955 8 C -0.070 4.070 9 C -0.002 4.002 10 C 0.133 3.867 11 N -0.688 5.688 12 C 0.066 3.934 13 C 0.026 3.974 14 C -0.524 4.524 15 H 0.054 0.946 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 S 0.172 5.828 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.181 0.819 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.341 0.659 33 H 0.019 0.981 34 H 0.058 0.942 35 H 0.024 0.976 36 H 0.015 0.985 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.687 -15.202 -13.131 21.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.316 4.316 3 C -0.070 4.070 4 N -0.070 5.070 5 C -0.232 4.232 6 N -0.180 5.180 7 C -0.086 4.086 8 C -0.127 4.127 9 C -0.117 4.117 10 C 0.002 3.998 11 N -0.320 5.320 12 C -0.062 4.062 13 C -0.011 4.011 14 C -0.563 4.563 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.531 5.531 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 S 0.421 5.579 23 H 0.093 0.907 24 H 0.100 0.900 25 H 0.103 0.897 26 H 0.198 0.802 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.159 0.841 33 H 0.038 0.962 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.033 0.967 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.194 -17.181 -12.877 22.644 hybrid contribution 0.792 3.313 -0.037 3.406 sum -6.403 -13.869 -12.914 20.002 Atomic orbital electron populations 1.20264 0.85401 1.03597 1.03785 1.23733 1.01273 0.94670 1.11929 1.20268 0.80273 1.01784 1.04672 1.43525 1.05076 1.07639 1.50763 1.26018 0.97763 0.86703 1.12716 1.70453 1.01856 1.24196 1.21455 1.20544 0.96201 0.87398 1.04497 1.20149 0.87619 1.01861 1.03117 1.21155 0.81829 0.95145 1.13527 1.20260 1.01378 0.85598 0.92524 1.60680 1.52683 1.08430 1.10216 1.22198 0.98492 0.83790 1.01685 1.19055 0.97784 0.95427 0.88862 1.21116 1.50859 0.92046 0.92264 0.92772 1.25001 0.95238 0.98334 0.95712 1.69962 1.50240 1.35561 0.97385 0.86642 0.78653 0.85626 0.76970 1.20228 1.21234 1.20234 1.84546 0.87426 1.03042 1.82910 0.90656 0.89974 0.89739 0.80233 0.90476 0.90726 0.90818 0.92724 0.90723 0.84111 0.96247 0.92327 0.95748 0.96703 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.36 36.01 0.37 -0.06 16 2 C -0.20 -1.93 6.42 -36.00 -0.23 -2.16 16 3 C 0.06 0.69 11.11 -16.71 -0.19 0.51 16 4 N -0.39 -5.79 3.19 -59.60 -0.19 -5.98 16 5 C 0.13 2.05 8.93 -88.71 -0.79 1.25 16 6 N -0.46 -7.60 11.32 -9.77 -0.11 -7.71 16 7 C 0.04 0.69 7.06 -83.08 -0.59 0.10 16 8 C -0.07 -0.83 10.20 36.01 0.37 -0.46 16 9 C 0.00 -0.04 6.76 -80.75 -0.55 -0.58 16 10 C 0.13 1.95 6.01 -4.97 -0.03 1.92 16 11 N -0.69 -12.22 6.49 -115.05 -0.75 -12.97 16 12 C 0.07 1.35 5.62 -3.83 -0.02 1.33 16 13 C 0.03 0.68 5.23 -27.89 -0.15 0.53 16 14 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 15 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 18 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 22 S 0.17 1.91 23.35 -107.50 -2.51 -0.60 16 23 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.18 1.81 8.06 -52.48 -0.42 1.39 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.77 7.12 -51.93 -0.37 0.40 16 30 H 0.05 0.73 7.13 -51.92 -0.37 0.36 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.34 6.06 8.72 -39.29 -0.34 5.72 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 329.28 15.07 4.96 4.96 Total: -1.00 -32.91 329.28 -10.36 -43.27 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -5.27 Total: -0.26 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -2.21 Total: -11.07 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.31 Total: -52.76 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.51 Total: -0.60 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.91 -10.36 -43.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612192071.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.767 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds