Wall clock time and date at job start Tue Mar 31 2020 00:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.30907 * 125.08927 * 2 1 4 4 N 1.37484 * 116.32115 * 179.85390 * 3 2 1 5 5 C 1.35149 * 113.93645 * 0.43249 * 4 3 2 6 6 N 1.32356 * 108.82474 * 179.76076 * 5 4 3 7 7 C 1.33867 * 109.13534 * 359.97438 * 6 5 4 8 8 C 1.50704 * 125.80264 * 179.97438 * 7 6 5 9 9 C 1.34328 * 108.39338 * 0.02562 * 7 6 5 10 10 C 1.50699 * 126.44395 * 180.02562 * 9 7 6 11 11 N 1.46905 * 109.47121 * 269.95764 * 10 9 7 12 12 C 1.46907 * 111.00030 * 179.97438 * 11 10 9 13 13 C 1.52990 * 109.47271 * 179.97438 * 12 11 10 14 14 C 1.50693 * 109.47586 * 179.97438 * 13 12 11 15 15 H 1.08010 * 119.99533 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00257 * 180.02562 * 14 13 12 17 17 N 1.31506 * 119.99983 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99836 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47261 * 59.99642 * 18 16 14 20 20 H 1.48501 * 109.46945 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46916 * 299.99646 * 18 16 14 22 22 S 1.75781 * 125.09165 * 180.30620 * 2 1 3 23 23 H 1.09002 * 109.47152 * 179.71762 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.71862 * 1 2 3 25 25 H 1.09004 * 109.47113 * 299.71843 * 1 2 3 26 26 H 1.08005 * 121.84140 * 0.02562 * 3 2 1 27 27 H 1.08995 * 109.47262 * 270.02691 * 8 7 6 28 28 H 1.09004 * 109.47187 * 30.03425 * 8 7 6 29 29 H 1.09005 * 109.46916 * 150.03035 * 8 7 6 30 30 H 1.09007 * 109.47113 * 29.95632 * 10 9 7 31 31 H 1.08998 * 109.47497 * 149.95410 * 10 9 7 32 32 H 1.00897 * 110.99988 * 56.04306 * 11 10 9 33 33 H 1.09001 * 109.47024 * 299.99967 * 12 11 10 34 34 H 1.09004 * 109.46666 * 59.99745 * 12 11 10 35 35 H 1.09007 * 109.46920 * 300.00388 * 13 12 11 36 36 H 1.09005 * 109.47182 * 59.99800 * 13 12 11 37 37 H 0.97006 * 119.99658 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2596 1.0712 0.0000 4 7 3.6183 0.8616 0.0031 5 6 3.9720 -0.4428 -0.0035 6 7 5.2928 -0.5272 -0.0050 7 6 5.8114 0.7070 0.0001 8 6 7.2797 1.0463 0.0009 9 6 4.8004 1.5915 0.0054 10 6 4.9250 3.0933 0.0117 11 7 4.9665 3.5754 1.3987 12 6 5.0885 5.0387 1.4440 13 6 5.1280 5.5024 2.9015 14 6 5.2538 7.0033 2.9480 15 1 5.3013 7.5699 2.0297 16 6 5.3092 7.6532 4.1627 17 7 5.2519 6.9632 5.2808 18 14 5.4644 9.5139 4.2203 19 1 4.2983 10.1293 3.5371 20 1 5.5028 9.9638 5.6350 21 1 6.7150 9.9277 3.5346 22 16 2.5176 -1.4383 -0.0077 23 1 -0.3633 -1.0277 -0.0051 24 1 -0.3633 0.5182 -0.8875 25 1 -0.3633 0.5095 0.8925 26 1 1.8363 2.0648 0.0004 27 1 7.6343 1.1232 1.0287 28 1 7.8339 0.2635 -0.5170 29 1 7.4330 1.9977 -0.5085 30 1 5.8416 3.3840 -0.5017 31 1 4.0677 3.5312 -0.4997 32 1 5.7146 3.1345 1.9126 33 1 6.0064 5.3425 0.9408 34 1 4.2326 5.4903 0.9424 35 1 4.2098 5.1985 3.4044 36 1 5.9837 5.0507 3.4034 37 1 5.2905 7.4205 6.1354 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612192071.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:14 Heat of formation + Delta-G solvation = 59.078558 kcal Electronic energy + Delta-G solvation = -18730.424714 eV Core-core repulsion = 15827.269260 eV Total energy + Delta-G solvation = -2903.155454 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.73146 -38.23609 -37.53551 -35.15967 -33.59776 -32.92700 -30.96448 -29.53896 -27.29757 -26.38541 -25.06407 -24.06942 -22.49195 -21.12624 -20.64864 -19.13164 -18.50751 -17.36750 -17.27947 -16.58654 -16.26700 -15.80094 -15.41958 -14.92693 -14.85483 -14.62121 -14.26953 -14.09049 -13.88641 -13.76997 -13.48881 -13.25224 -13.11149 -12.92808 -12.80715 -12.47397 -12.18027 -12.12577 -11.96245 -11.51762 -11.38235 -11.22531 -11.14909 -10.56480 -9.63135 -9.39220 -8.66333 -8.20247 -6.32306 -0.18190 -0.12613 0.57876 1.15760 1.41180 1.44209 1.52141 1.54214 1.68099 2.40793 3.13440 3.23130 3.43397 3.66095 3.84043 4.00225 4.03563 4.19987 4.41166 4.45008 4.55650 4.59896 4.75862 4.76492 4.78322 4.88697 4.92492 5.04922 5.12423 5.25292 5.42871 5.52054 5.64266 5.75225 5.82870 6.07657 6.20701 6.39863 6.62487 6.85156 7.37435 8.91654 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022777 B = 0.003473 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.018534 B = 8060.731518 C = 8861.862212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.172 4.172 3 C 0.020 3.980 4 N -0.396 5.396 5 C 0.107 3.893 6 N -0.492 5.492 7 C 0.035 3.965 8 C -0.068 4.068 9 C -0.023 4.023 10 C 0.142 3.858 11 N -0.695 5.695 12 C 0.086 3.914 13 C 0.032 3.968 14 C -0.544 4.544 15 H 0.064 0.936 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.967 3.033 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.265 1.265 22 S 0.201 5.799 23 H 0.091 0.909 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.194 0.806 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.339 0.661 33 H 0.029 0.971 34 H 0.063 0.937 35 H -0.009 1.009 36 H -0.010 1.010 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.762 -14.581 -14.422 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.291 4.291 3 C -0.107 4.107 4 N -0.074 5.074 5 C -0.258 4.258 6 N -0.217 5.217 7 C -0.097 4.097 8 C -0.126 4.126 9 C -0.138 4.138 10 C 0.013 3.987 11 N -0.327 5.327 12 C -0.042 4.042 13 C -0.006 4.006 14 C -0.583 4.583 15 H 0.082 0.918 16 C -0.198 4.198 17 N -0.573 5.573 18 Si 0.791 3.209 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.190 1.190 22 S 0.449 5.551 23 H 0.110 0.890 24 H 0.120 0.880 25 H 0.113 0.887 26 H 0.211 0.789 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.157 0.843 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.009 0.991 36 H 0.008 0.992 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.289 -16.570 -14.193 23.339 hybrid contribution 1.018 2.975 0.366 3.165 sum -7.271 -13.595 -13.826 20.709 Atomic orbital electron populations 1.20496 0.82368 1.05137 1.05166 1.24315 1.02858 0.93363 1.08562 1.20667 0.79399 1.03226 1.07390 1.43731 1.05986 1.07441 1.50208 1.26721 0.98475 0.87985 1.12658 1.70421 1.02924 1.25101 1.23236 1.21064 0.97571 0.87179 1.03891 1.20235 0.86016 1.02862 1.03461 1.21220 0.82325 0.95259 1.14959 1.20216 1.02540 0.85409 0.90562 1.60565 1.52803 1.06782 1.12563 1.21798 0.99137 0.85485 0.97787 1.18910 0.94893 0.94788 0.91986 1.21584 1.50544 0.93297 0.92828 0.91769 1.25987 0.94672 1.03834 0.95262 1.70111 1.51302 1.37827 0.98077 0.85474 0.79275 0.79001 0.77124 1.19051 1.21026 1.19012 1.84431 0.85678 1.03053 1.81908 0.89033 0.87967 0.88734 0.78900 0.90412 0.90002 0.89301 0.90925 0.89998 0.84320 0.95249 0.91865 0.99098 0.99187 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.36 71.24 0.74 0.09 16 2 C -0.17 -3.04 6.42 25.74 0.17 -2.87 16 3 C 0.02 0.46 11.11 83.86 0.93 1.39 16 4 N -0.40 -11.60 3.19 -342.49 -1.09 -12.69 16 5 C 0.11 3.26 8.93 179.68 1.60 4.87 16 6 N -0.49 -16.63 11.32 -184.83 -2.09 -18.72 16 7 C 0.03 1.06 7.06 41.36 0.29 1.35 16 8 C -0.07 -1.60 10.20 71.24 0.73 -0.87 16 9 C -0.02 -0.69 6.76 40.54 0.27 -0.42 16 10 C 0.14 4.04 6.01 85.56 0.51 4.55 16 11 N -0.70 -24.57 6.49 -517.91 -3.36 -27.93 16 12 C 0.09 3.48 5.62 86.30 0.49 3.97 16 13 C 0.03 1.68 5.23 29.84 0.16 1.83 16 14 C -0.54 -30.60 9.11 25.60 0.23 -30.37 16 15 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 16 C 0.00 0.02 5.46 84.66 0.46 0.49 16 17 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 18 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 S 0.20 4.23 23.35 -56.49 -1.32 2.91 16 23 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.19 3.67 8.06 -2.91 -0.02 3.64 16 27 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.09 1.76 7.12 -2.38 -0.02 1.74 16 30 H 0.07 1.81 7.13 -2.38 -0.02 1.79 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.34 12.20 8.72 -89.70 -0.78 11.41 16 33 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 35 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 36 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 37 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 Total: -1.00 -71.95 329.28 1.32 -70.63 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.29 Total: 12.82 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 6.58 Total: -15.99 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -6.26 Total: -116.11 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -1.32 Total: 2.91 kcal Total: -71.95 1.32 -70.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612192071.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.709 kcal (2) G-P(sol) polarization free energy of solvation -71.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds