Wall clock time and date at job start Tue Mar 31 2020 00:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47352 * 2 1 4 4 C 1.53004 * 109.47450 * 239.99728 * 2 1 3 5 5 N 1.46503 * 109.47175 * 119.99700 * 2 1 3 6 6 C 1.34770 * 120.00004 * 64.17801 * 5 2 1 7 7 S 1.71206 * 119.99913 * 354.34248 * 6 5 2 8 8 N 1.34779 * 120.00250 * 174.33693 * 6 5 2 9 9 C 1.39404 * 120.00255 * 185.35349 * 8 6 5 10 10 C 1.38656 * 119.65001 * 185.32680 * 9 8 6 11 11 C 1.40818 * 118.67539 * 179.72640 * 10 9 8 12 12 C 1.41543 * 120.99831 * 180.25111 * 11 10 9 13 13 H 1.08001 * 119.99553 * 145.19753 * 12 11 10 14 14 C 1.40028 * 120.00028 * 325.19310 * 12 11 10 15 15 N 1.30742 * 120.00123 * 4.82483 * 14 12 11 16 16 Si 1.86804 * 119.99967 * 184.81823 * 14 12 11 17 17 H 1.48498 * 109.46836 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46740 * 120.00010 * 16 14 12 19 19 H 1.48491 * 109.47177 * 240.00256 * 16 14 12 20 20 C 1.41172 * 118.00238 * 0.27188 * 11 10 9 21 21 C 1.36591 * 119.13251 * 0.02562 * 20 11 10 22 22 N 1.32068 * 121.25856 * 0.02562 * 21 20 11 23 23 H 1.09001 * 109.47228 * 304.99755 * 1 2 3 24 24 H 1.09003 * 109.46926 * 64.98986 * 1 2 3 25 25 H 1.08994 * 109.47103 * 184.99012 * 1 2 3 26 26 H 1.09002 * 109.47253 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46675 * 299.99483 * 3 2 1 28 28 H 1.09000 * 109.47338 * 59.99439 * 3 2 1 29 29 H 1.09000 * 109.46669 * 305.36827 * 4 2 1 30 30 H 1.08995 * 109.46931 * 65.36924 * 4 2 1 31 31 H 1.08999 * 109.46904 * 185.36981 * 4 2 1 32 32 H 0.97005 * 119.99932 * 244.18291 * 5 2 1 33 33 H 0.97004 * 119.99606 * 5.35873 * 8 6 5 34 34 H 1.08003 * 120.66496 * 359.97438 * 10 9 8 35 35 H 0.96997 * 120.00159 * 179.97438 * 15 14 12 36 36 H 1.08002 * 120.42992 * 179.97438 * 20 11 10 37 37 H 1.07997 * 119.36773 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 1.7636 -2.0028 1.3679 7 16 0.7489 -2.8294 0.2642 8 7 2.3078 -2.6644 2.4085 9 6 2.1364 -4.0430 2.5245 10 6 2.6033 -4.6997 3.6529 11 6 2.4140 -6.0916 3.7514 12 6 2.8662 -6.8105 4.8838 13 1 2.3004 -7.6551 5.2484 14 6 4.0470 -6.4265 5.5311 15 7 4.6815 -5.3492 5.1489 16 14 4.7157 -7.4537 6.9409 17 1 3.8192 -8.6138 7.1766 18 1 6.0754 -7.9413 6.5965 19 1 4.7842 -6.6227 8.1696 20 6 1.7601 -6.7486 2.6866 21 6 1.3403 -6.0177 1.6118 22 7 1.5354 -4.7129 1.5520 23 1 -0.3634 0.5894 0.8418 24 1 -0.3633 0.4345 -0.9313 25 1 -0.3633 -1.0237 0.0894 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6003 -1.7175 -1.2985 30 1 1.7574 -0.1550 -2.1366 31 1 3.1258 -0.8053 -1.2023 32 1 2.5249 -0.2033 1.8647 33 1 2.8187 -2.1812 3.0767 34 1 3.0986 -4.1540 4.4423 35 1 5.4992 -5.0830 5.5976 36 1 1.5947 -7.8154 2.7212 37 1 0.8393 -6.5164 0.7953 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763168283.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:14 Heat of formation + Delta-G solvation = 67.227612 kcal Electronic energy + Delta-G solvation = -19380.825120 eV Core-core repulsion = 16478.023036 eV Total energy + Delta-G solvation = -2902.802085 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -39.55674 -38.46568 -36.04284 -33.95529 -32.03080 -30.50999 -28.48984 -27.60651 -27.02477 -26.08945 -23.69651 -22.06110 -21.10215 -20.06736 -18.08560 -17.86676 -16.42885 -15.53599 -15.09683 -14.89308 -14.55402 -14.24568 -13.95889 -13.88884 -13.62255 -12.95984 -12.65517 -12.53018 -12.39350 -11.96669 -11.80160 -11.58162 -11.40867 -11.22200 -11.03307 -10.94431 -10.80749 -10.37156 -10.26182 -10.12979 -9.54597 -9.37824 -8.41851 -7.89299 -7.38815 -6.85194 -6.70273 -5.17812 -4.63545 1.67959 2.55319 2.78557 2.92608 3.02210 3.07244 3.10550 3.26530 3.87463 3.89869 4.69655 4.76778 4.92443 5.09187 5.47686 5.60058 5.62833 5.73621 5.77091 5.79665 5.93269 6.06639 6.17221 6.39679 6.44183 6.71884 6.77915 6.80020 6.86925 6.97471 7.07067 7.15440 7.38339 7.49018 7.74753 7.89538 8.14828 8.45935 8.70091 8.77111 9.61678 10.14791 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031508 B = 0.004376 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.436674 B = 6396.664532 C = 7054.065673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.184 3.816 3 C -0.155 4.155 4 C -0.189 4.189 5 N -0.693 5.693 6 C 0.534 3.466 7 S -0.532 6.532 8 N -0.606 5.606 9 C 0.309 3.691 10 C -0.218 4.218 11 C 0.137 3.863 12 C -0.461 4.461 13 H 0.081 0.919 14 C 0.074 3.926 15 N -0.812 5.812 16 Si 0.917 3.083 17 H -0.260 1.260 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.260 4.260 21 C 0.104 3.896 22 N -0.482 5.482 23 H 0.042 0.958 24 H 0.060 0.940 25 H 0.116 0.884 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.121 0.879 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.389 0.611 33 H 0.401 0.599 34 H 0.133 0.867 35 H 0.278 0.722 36 H 0.102 0.898 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.977 11.115 -3.920 11.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.099 3.901 3 C -0.213 4.213 4 C -0.249 4.249 5 N -0.326 5.326 6 C 0.178 3.822 7 S -0.398 6.398 8 N -0.228 5.228 9 C 0.082 3.918 10 C -0.244 4.244 11 C 0.128 3.872 12 C -0.494 4.494 13 H 0.099 0.901 14 C -0.142 4.142 15 N -0.440 5.440 16 Si 0.742 3.258 17 H -0.184 1.184 18 H -0.199 1.199 19 H -0.200 1.200 20 C -0.283 4.283 21 C -0.051 4.051 22 N -0.200 5.200 23 H 0.061 0.939 24 H 0.079 0.921 25 H 0.134 0.866 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.139 0.861 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.224 0.776 33 H 0.238 0.762 34 H 0.151 0.849 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.808 11.145 -5.476 12.549 hybrid contribution 2.000 0.214 2.773 3.426 sum 0.192 11.360 -2.703 11.679 Atomic orbital electron populations 1.22744 0.93548 1.07483 1.00823 1.20382 0.95312 0.90582 0.83803 1.22122 1.01388 0.94797 1.02948 1.22803 1.00745 1.06440 0.94899 1.45228 1.56170 1.06826 1.24366 1.22340 0.86485 0.84784 0.88545 1.92442 1.38191 1.69521 1.39695 1.42319 1.49513 1.07555 1.23440 1.18316 0.98841 0.80917 0.93770 1.21812 1.09106 0.95613 0.97916 1.17587 0.87548 0.90366 0.91680 1.19542 1.06703 1.13080 1.10027 0.90080 1.25878 0.96551 0.94733 0.97037 1.69701 1.15551 1.21303 1.37411 0.86115 0.79225 0.80400 0.80106 1.18412 1.19896 1.19963 1.21942 1.10140 0.99404 0.96851 1.21897 0.97076 0.89863 0.96304 1.69622 1.17342 1.07572 1.25469 0.93851 0.92145 0.86585 0.92220 0.90490 0.92257 0.86089 0.92355 0.93634 0.77578 0.76177 0.84938 0.91151 0.87966 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.40 8.44 37.16 0.31 -2.09 16 2 C 0.18 2.23 1.06 -131.81 -0.14 2.09 16 3 C -0.15 -1.35 8.59 37.16 0.32 -1.03 16 4 C -0.19 -2.55 8.21 37.16 0.31 -2.25 16 5 N -0.69 -9.15 5.11 -49.30 -0.25 -9.40 16 6 C 0.53 9.49 7.46 -86.92 -0.65 8.84 16 7 S -0.53 -11.13 19.65 -107.50 -2.11 -13.24 16 8 N -0.61 -11.29 5.39 -13.03 -0.07 -11.36 16 9 C 0.31 7.13 7.37 -154.72 -1.14 5.99 16 10 C -0.22 -5.36 8.61 -38.45 -0.33 -5.69 16 11 C 0.14 3.51 5.57 -106.55 -0.59 2.92 16 12 C -0.46 -11.74 9.10 -37.65 -0.34 -12.08 16 13 H 0.08 1.99 7.85 -52.49 -0.41 1.58 16 14 C 0.07 1.78 5.44 -17.34 -0.09 1.68 16 15 N -0.81 -19.92 10.68 55.55 0.59 -19.32 16 16 Si 0.92 18.12 29.56 -169.99 -5.03 13.10 16 17 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 20 C -0.26 -6.20 9.85 -39.06 -0.38 -6.59 16 21 C 0.10 2.42 11.10 -18.04 -0.20 2.22 16 22 N -0.48 -11.60 6.17 -12.76 -0.08 -11.68 16 23 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.12 1.90 4.69 -31.27 -0.15 1.75 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.12 2.04 4.64 -29.48 -0.14 1.91 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.39 4.00 8.50 -40.82 -0.35 3.66 16 33 H 0.40 6.18 8.72 -40.82 -0.36 5.83 16 34 H 0.13 3.28 6.25 -52.48 -0.33 2.95 16 35 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 36 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 37 H 0.13 2.60 8.06 -52.49 -0.42 2.17 16 LS Contribution 310.73 15.07 4.68 4.68 Total: -1.00 -29.35 310.73 -9.87 -39.22 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -4.67 Total: 14.00 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -2.94 Total: -5.98 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: 0.19 Total: -51.77 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.10 kcal Atomic # 16 Polarization: -11.13 SS G_CDS: -2.11 Total: -13.24 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.35 -9.87 -39.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763168283.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.444 kcal (2) G-P(sol) polarization free energy of solvation -29.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds