Wall clock time and date at job start Tue Mar 31 2020 00:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47352 * 2 1 4 4 C 1.53004 * 109.47450 * 239.99728 * 2 1 3 5 5 N 1.46503 * 109.47175 * 119.99700 * 2 1 3 6 6 C 1.34770 * 120.00004 * 64.17801 * 5 2 1 7 7 S 1.71206 * 119.99913 * 354.34248 * 6 5 2 8 8 N 1.34779 * 120.00250 * 174.33693 * 6 5 2 9 9 C 1.39404 * 120.00255 * 185.35349 * 8 6 5 10 10 C 1.38656 * 119.65001 * 185.32680 * 9 8 6 11 11 C 1.40818 * 118.67539 * 179.72640 * 10 9 8 12 12 C 1.41543 * 120.99831 * 180.25111 * 11 10 9 13 13 H 1.08001 * 119.99553 * 145.19753 * 12 11 10 14 14 C 1.40028 * 120.00028 * 325.19310 * 12 11 10 15 15 N 1.30742 * 120.00123 * 4.82483 * 14 12 11 16 16 Si 1.86804 * 119.99967 * 184.81823 * 14 12 11 17 17 H 1.48498 * 109.46836 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46740 * 120.00010 * 16 14 12 19 19 H 1.48491 * 109.47177 * 240.00256 * 16 14 12 20 20 C 1.41172 * 118.00238 * 0.27188 * 11 10 9 21 21 C 1.36591 * 119.13251 * 0.02562 * 20 11 10 22 22 N 1.32068 * 121.25856 * 0.02562 * 21 20 11 23 23 H 1.09001 * 109.47228 * 304.99755 * 1 2 3 24 24 H 1.09003 * 109.46926 * 64.98986 * 1 2 3 25 25 H 1.08994 * 109.47103 * 184.99012 * 1 2 3 26 26 H 1.09002 * 109.47253 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46675 * 299.99483 * 3 2 1 28 28 H 1.09000 * 109.47338 * 59.99439 * 3 2 1 29 29 H 1.09000 * 109.46669 * 305.36827 * 4 2 1 30 30 H 1.08995 * 109.46931 * 65.36924 * 4 2 1 31 31 H 1.08999 * 109.46904 * 185.36981 * 4 2 1 32 32 H 0.97005 * 119.99932 * 244.18291 * 5 2 1 33 33 H 0.97004 * 119.99606 * 5.35873 * 8 6 5 34 34 H 1.08003 * 120.66496 * 359.97438 * 10 9 8 35 35 H 0.96997 * 120.00159 * 179.97438 * 15 14 12 36 36 H 1.08002 * 120.42992 * 179.97438 * 20 11 10 37 37 H 1.07997 * 119.36773 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 1.7636 -2.0028 1.3679 7 16 0.7489 -2.8294 0.2642 8 7 2.3078 -2.6644 2.4085 9 6 2.1364 -4.0430 2.5245 10 6 2.6033 -4.6997 3.6529 11 6 2.4140 -6.0916 3.7514 12 6 2.8662 -6.8105 4.8838 13 1 2.3004 -7.6551 5.2484 14 6 4.0470 -6.4265 5.5311 15 7 4.6815 -5.3492 5.1489 16 14 4.7157 -7.4537 6.9409 17 1 3.8192 -8.6138 7.1766 18 1 6.0754 -7.9413 6.5965 19 1 4.7842 -6.6227 8.1696 20 6 1.7601 -6.7486 2.6866 21 6 1.3403 -6.0177 1.6118 22 7 1.5354 -4.7129 1.5520 23 1 -0.3634 0.5894 0.8418 24 1 -0.3633 0.4345 -0.9313 25 1 -0.3633 -1.0237 0.0894 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6003 -1.7175 -1.2985 30 1 1.7574 -0.1550 -2.1366 31 1 3.1258 -0.8053 -1.2023 32 1 2.5249 -0.2033 1.8647 33 1 2.8187 -2.1812 3.0767 34 1 3.0986 -4.1540 4.4423 35 1 5.4992 -5.0830 5.5976 36 1 1.5947 -7.8154 2.7212 37 1 0.8393 -6.5164 0.7953 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763168283.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:14 Heat of formation + Delta-G solvation = 50.987851 kcal Electronic energy + Delta-G solvation = -19381.529329 eV Core-core repulsion = 16478.023036 eV Total energy + Delta-G solvation = -2903.506293 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.07476 -39.92807 -37.52063 -35.76417 -33.34665 -32.36028 -30.18103 -28.47265 -28.07614 -27.94013 -25.16560 -23.80221 -22.81865 -21.30403 -19.70429 -19.37088 -17.98611 -17.17690 -16.63689 -16.31562 -16.01437 -15.81841 -15.63532 -15.08567 -14.76312 -14.65332 -14.34542 -13.98582 -13.25155 -13.15951 -12.99883 -12.88014 -12.82757 -12.67474 -12.55425 -12.14534 -12.09946 -12.01885 -11.86987 -11.67018 -11.22678 -10.84418 -10.18046 -9.77557 -9.04088 -8.58431 -8.37350 -6.82013 -6.53641 0.14494 1.05669 1.13530 1.16868 1.41460 1.54250 1.58698 1.65455 2.22656 2.59523 2.86128 3.73687 3.85854 4.03401 4.08690 4.17631 4.56376 4.68168 4.73019 4.81476 4.88836 4.92244 4.96455 5.02368 5.11741 5.12463 5.19372 5.27549 5.44881 5.51447 5.57947 5.69545 5.78784 5.98840 6.01099 6.27151 6.47835 6.59610 6.82907 6.89185 7.80000 8.36088 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031508 B = 0.004376 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.436674 B = 6396.664532 C = 7054.065673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.179 3.821 3 C -0.146 4.146 4 C -0.187 4.187 5 N -0.665 5.665 6 C 0.548 3.452 7 S -0.599 6.599 8 N -0.603 5.603 9 C 0.312 3.688 10 C -0.234 4.234 11 C 0.109 3.891 12 C -0.492 4.492 13 H 0.080 0.920 14 C 0.036 3.964 15 N -0.834 5.834 16 Si 0.989 3.011 17 H -0.259 1.259 18 H -0.269 1.269 19 H -0.264 1.264 20 C -0.272 4.272 21 C 0.099 3.901 22 N -0.494 5.494 23 H 0.052 0.948 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.409 0.591 33 H 0.417 0.583 34 H 0.127 0.873 35 H 0.286 0.714 36 H 0.114 0.886 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.071 12.970 -3.449 13.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.095 3.905 3 C -0.204 4.204 4 C -0.246 4.246 5 N -0.297 5.297 6 C 0.189 3.811 7 S -0.466 6.466 8 N -0.228 5.228 9 C 0.083 3.917 10 C -0.260 4.260 11 C 0.100 3.900 12 C -0.524 4.524 13 H 0.098 0.902 14 C -0.178 4.178 15 N -0.462 5.462 16 Si 0.810 3.190 17 H -0.183 1.183 18 H -0.194 1.194 19 H -0.189 1.189 20 C -0.295 4.295 21 C -0.057 4.057 22 N -0.212 5.212 23 H 0.071 0.929 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.248 0.752 33 H 0.256 0.744 34 H 0.145 0.855 35 H 0.097 0.903 36 H 0.132 0.868 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.896 13.082 -5.019 14.040 hybrid contribution 1.703 -0.224 2.546 3.071 sum 0.806 12.858 -2.473 13.119 Atomic orbital electron populations 1.22618 0.93973 1.05502 1.02175 1.20660 0.95054 0.92392 0.82427 1.22081 1.01975 0.91778 1.04553 1.22680 1.00213 1.05103 0.96645 1.45272 1.54387 1.05074 1.24966 1.22059 0.85667 0.86072 0.87284 1.92627 1.40904 1.71660 1.41398 1.42098 1.50130 1.06240 1.24352 1.18448 0.97673 0.82580 0.93015 1.21758 1.10185 0.95530 0.98547 1.17980 0.88262 0.91234 0.92518 1.19789 1.07938 1.13719 1.10984 0.90193 1.26709 0.96177 0.95748 0.99175 1.69747 1.15950 1.22251 1.38270 0.85044 0.78352 0.78719 0.76913 1.18277 1.19407 1.18913 1.22092 1.10461 1.00113 0.96836 1.22287 0.96714 0.89990 0.96680 1.69820 1.17684 1.07895 1.25840 0.92901 0.90452 0.89957 0.91281 0.88799 0.90813 0.89431 0.90155 0.93932 0.75227 0.74356 0.85535 0.90289 0.86805 0.83630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.38 8.44 71.98 0.61 -3.77 16 2 C 0.18 3.87 1.06 3.60 0.00 3.87 16 3 C -0.15 -1.93 8.59 71.98 0.62 -1.31 16 4 C -0.19 -4.74 8.21 71.98 0.59 -4.15 16 5 N -0.66 -16.12 5.11 -309.88 -1.58 -17.70 16 6 C 0.55 19.09 7.46 179.06 1.34 20.42 16 7 S -0.60 -25.47 19.65 -56.49 -1.11 -26.58 16 8 N -0.60 -22.24 5.39 -195.13 -1.05 -23.29 16 9 C 0.31 14.57 7.37 132.78 0.98 15.55 16 10 C -0.23 -11.74 8.61 23.00 0.20 -11.54 16 11 C 0.11 5.72 5.57 -21.11 -0.12 5.60 16 12 C -0.49 -25.49 9.10 23.52 0.21 -25.28 16 13 H 0.08 4.00 7.85 -2.91 -0.02 3.98 16 14 C 0.04 1.71 5.44 85.29 0.46 2.17 16 15 N -0.83 -40.94 10.68 21.84 0.23 -40.71 16 16 Si 0.99 36.67 29.56 68.60 2.03 38.70 16 17 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 18 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 19 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 20 C -0.27 -13.26 9.85 22.61 0.22 -13.03 16 21 C 0.10 4.67 11.10 84.27 0.94 5.60 16 22 N -0.49 -24.18 6.17 -194.30 -1.20 -25.37 16 23 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.08 2.67 4.69 -15.53 -0.07 2.59 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.09 2.95 4.64 -16.66 -0.08 2.88 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.41 7.11 8.50 -92.70 -0.79 6.32 16 33 H 0.42 12.43 8.72 -92.71 -0.81 11.63 16 34 H 0.13 6.39 6.25 -2.91 -0.02 6.37 16 35 H 0.29 12.67 8.29 -92.71 -0.77 11.90 16 36 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 37 H 0.15 6.09 8.06 -2.91 -0.02 6.07 16 Total: -1.00 -65.23 310.73 2.75 -62.48 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: -0.62 Total: 38.34 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 6.05 Total: -5.87 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -3.60 Total: -107.08 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.03 Total: 38.70 kcal Atomic # 16 Polarization: -25.47 SS G_CDS: -1.11 Total: -26.58 kcal Total: -65.23 2.75 -62.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763168283.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.469 kcal (2) G-P(sol) polarization free energy of solvation -65.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds