Wall clock time and date at job start Tue Mar 31 2020 00:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 120.00045 * 2 1 4 4 N 1.46899 * 109.47044 * 124.55314 * 3 2 1 5 5 C 1.46894 * 111.00348 * 164.25719 * 4 3 2 6 6 C 1.50699 * 109.47097 * 293.95567 * 5 4 3 7 7 H 1.07997 * 120.00033 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00018 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00291 * 359.97438 * 8 6 5 10 10 Si 1.86809 * 119.99879 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46861 * 89.99744 * 10 8 6 12 12 H 1.48497 * 109.47130 * 209.99857 * 10 8 6 13 13 H 1.48498 * 109.46991 * 329.99912 * 10 8 6 14 14 C 1.46900 * 111.00027 * 288.21252 * 4 3 2 15 15 N 1.46499 * 109.47689 * 171.47356 * 14 4 3 16 16 C 1.35944 * 119.93834 * 105.97350 * 15 14 4 17 17 C 1.35985 * 119.17112 * 179.77783 * 16 15 14 18 18 C 1.50701 * 120.46579 * 180.22927 * 17 16 15 19 19 C 1.39924 * 119.06861 * 0.47548 * 17 16 15 20 20 N 1.31697 * 119.82931 * 359.77400 * 19 17 16 21 21 C 1.33474 * 120.83916 * 359.97438 * 20 19 17 22 22 S 1.71196 * 119.51852 * 180.02562 * 21 20 19 23 23 H 1.07996 * 120.00494 * 185.06031 * 1 2 3 24 24 H 1.08009 * 119.99572 * 5.05430 * 1 2 3 25 25 H 1.07996 * 119.99754 * 180.02562 * 2 1 3 26 26 H 1.08995 * 109.47391 * 4.55223 * 3 2 1 27 27 H 1.08995 * 109.46810 * 244.54685 * 3 2 1 28 28 H 1.09000 * 109.47261 * 53.94905 * 5 4 3 29 29 H 1.09000 * 109.47590 * 173.95075 * 5 4 3 30 30 H 0.97000 * 120.00011 * 179.97438 * 9 8 6 31 31 H 1.09006 * 109.46981 * 291.47303 * 14 4 3 32 32 H 1.09002 * 109.47552 * 51.47144 * 14 4 3 33 33 H 1.07997 * 120.41464 * 0.02562 * 16 15 14 34 34 H 1.08999 * 109.46984 * 270.25263 * 18 17 16 35 35 H 1.09001 * 109.47086 * 30.25086 * 18 17 16 36 36 H 1.08994 * 109.47388 * 150.25447 * 18 17 16 37 37 H 1.08001 * 120.08290 * 179.79049 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9886 1.3364 1.1407 5 6 3.9917 2.3969 0.9761 6 6 4.8798 2.0706 -0.1969 7 1 4.7157 1.1658 -0.7632 8 6 5.9017 2.9273 -0.5471 9 7 6.1012 4.0294 0.1422 10 14 7.0030 2.5226 -2.0007 11 1 6.4241 3.1057 -3.2377 12 1 8.3552 3.0918 -1.7709 13 1 7.1051 1.0486 -2.1490 14 6 2.2591 1.4936 2.4060 15 7 3.1841 1.3173 3.5283 16 6 3.5922 2.3967 4.2470 17 6 4.4475 2.2146 5.2884 18 6 4.9146 3.3898 6.1080 19 6 4.8918 0.9213 5.5852 20 7 4.4758 -0.0966 4.8605 21 6 3.6323 0.0875 3.8426 22 16 3.1129 -1.2600 2.9233 23 1 -0.5401 -0.9316 0.0825 24 1 -0.5400 0.9318 -0.0824 25 1 1.8499 -0.9353 -0.0004 26 1 1.3581 2.1320 0.0816 27 1 2.6276 1.3989 -0.9279 28 1 3.4894 3.3477 0.7981 29 1 4.5960 2.4690 1.8804 30 1 6.8205 4.6319 -0.1040 31 1 1.8195 2.4901 2.4506 32 1 1.4690 0.7450 2.4654 33 1 3.2385 3.3858 3.9965 34 1 5.8237 3.8007 5.6687 35 1 4.1389 4.1554 6.1203 36 1 5.1193 3.0634 7.1276 37 1 5.5738 0.7584 6.4065 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793559935.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:36 Heat of formation + Delta-G solvation = 95.552236 kcal Electronic energy + Delta-G solvation = -19844.501457 eV Core-core repulsion = 16942.927620 eV Total energy + Delta-G solvation = -2901.573837 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.52459 -37.62252 -35.12174 -33.99231 -33.23467 -32.01305 -28.23198 -27.75149 -26.66247 -24.92313 -23.96876 -23.12284 -20.86151 -19.27047 -18.26150 -18.20762 -16.85493 -16.60632 -15.78972 -14.87965 -14.84648 -14.73804 -14.03015 -13.96096 -13.57085 -13.36507 -13.02883 -12.87018 -12.66622 -12.30372 -12.16737 -11.65832 -11.34295 -11.04225 -10.90844 -10.80034 -10.74743 -10.39958 -10.02460 -9.95735 -9.90175 -9.44751 -8.86278 -8.58484 -7.66281 -7.10605 -6.74550 -6.19249 -4.19815 0.35301 0.93958 2.23072 2.74226 2.84556 3.24575 3.28462 3.31326 3.38587 4.11816 4.30195 4.32757 4.45232 4.71419 4.76182 4.97674 5.11963 5.18336 5.44545 5.45934 5.51562 5.52667 5.65015 5.72628 5.84141 5.98316 6.23151 6.35627 6.39508 6.46739 6.82671 6.96203 7.14588 7.23244 7.57306 7.65287 7.80300 7.92617 8.27700 8.87739 9.45533 10.91614 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.011946 B = 0.007749 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.390724 B = 3612.484818 C = 4972.238513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.109 4.109 3 C 0.096 3.904 4 N -0.522 5.522 5 C 0.190 3.810 6 C -0.506 4.506 7 H 0.068 0.932 8 C 0.058 3.942 9 N -0.900 5.900 10 Si 0.899 3.101 11 H -0.279 1.279 12 H -0.286 1.286 13 H -0.271 1.271 14 C 0.257 3.743 15 N -0.436 5.436 16 C 0.174 3.826 17 C -0.223 4.223 18 C -0.093 4.093 19 C 0.223 3.777 20 N -0.485 5.485 21 C 0.452 3.548 22 S -0.538 6.538 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.117 0.883 26 H 0.028 0.972 27 H 0.103 0.897 28 H -0.007 1.007 29 H 0.023 0.977 30 H 0.262 0.738 31 H 0.059 0.941 32 H 0.118 0.882 33 H 0.179 0.821 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.632 2.897 11.070 13.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.128 4.128 3 C -0.031 4.031 4 N -0.247 5.247 5 C 0.065 3.935 6 C -0.544 4.544 7 H 0.086 0.914 8 C -0.144 4.144 9 N -0.539 5.539 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.195 1.195 14 C 0.044 3.956 15 N -0.121 5.121 16 C 0.031 3.969 17 C -0.235 4.235 18 C -0.151 4.151 19 C 0.036 3.964 20 N -0.199 5.199 21 C 0.102 3.898 22 S -0.392 6.392 23 H 0.110 0.890 24 H 0.105 0.895 25 H 0.135 0.865 26 H 0.046 0.954 27 H 0.121 0.879 28 H 0.011 0.989 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.196 0.804 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.637 0.624 10.214 12.197 hybrid contribution 0.558 2.321 -0.404 2.421 sum -6.079 2.945 9.810 11.910 Atomic orbital electron populations 1.23647 0.95927 1.01025 1.05748 1.23133 0.95172 0.99574 0.94910 1.21059 0.93530 0.93190 0.95359 1.61877 1.14204 1.50371 0.98297 1.19838 0.89096 0.86523 0.98030 1.21079 1.13616 1.06990 1.12744 0.91433 1.24957 0.97372 0.94880 0.97149 1.69924 1.32035 1.11832 1.40149 0.86464 0.79687 0.78965 0.82252 1.20554 1.21193 1.19546 1.22687 0.89196 1.01156 0.82553 1.46153 1.34967 1.06136 1.24858 1.22834 0.91734 0.93354 0.89008 1.20492 1.03686 0.98264 1.01073 1.20540 1.02072 0.94033 0.98492 1.24001 0.90515 0.87783 0.94130 1.70143 1.12257 1.31901 1.05643 1.23953 0.87134 0.88159 0.90588 1.92679 1.65503 1.28887 1.52116 0.88992 0.89498 0.86529 0.95406 0.87862 0.98919 0.95938 0.92848 0.92335 0.86391 0.80426 0.90379 0.91149 0.90769 0.80549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.25 14.31 29.02 0.42 -2.83 16 2 C -0.11 -1.86 8.82 -36.02 -0.32 -2.18 16 3 C 0.10 1.78 5.26 -4.97 -0.03 1.75 16 4 N -0.52 -10.72 4.03 -241.44 -0.97 -11.69 16 5 C 0.19 4.55 4.61 -4.98 -0.02 4.53 16 6 C -0.51 -13.77 8.29 -34.44 -0.29 -14.05 16 7 H 0.07 1.89 7.25 -52.49 -0.38 1.50 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -25.27 13.29 55.43 0.74 -24.54 16 10 Si 0.90 21.47 29.54 -169.99 -5.02 16.44 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.26 4.33 4.49 -63.32 -0.28 4.04 16 15 N -0.44 -7.32 2.26 -121.61 -0.27 -7.59 16 16 C 0.17 2.27 8.94 -16.54 -0.15 2.12 16 17 C -0.22 -2.47 5.87 -104.80 -0.62 -3.09 16 18 C -0.09 -0.67 10.04 36.01 0.36 -0.31 16 19 C 0.22 2.78 11.00 -16.98 -0.19 2.60 16 20 N -0.48 -8.58 10.39 -13.80 -0.14 -8.73 16 21 C 0.45 8.85 7.60 -88.22 -0.67 8.18 16 22 S -0.54 -12.20 28.66 -107.50 -3.08 -15.28 16 23 H 0.09 1.23 8.06 -52.49 -0.42 0.81 16 24 H 0.09 1.13 7.86 -52.48 -0.41 0.72 16 25 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 26 H 0.03 0.47 7.71 -51.93 -0.40 0.07 16 27 H 0.10 2.12 6.59 -51.93 -0.34 1.78 16 28 H -0.01 -0.17 8.12 -51.93 -0.42 -0.59 16 29 H 0.02 0.58 6.47 -51.93 -0.34 0.24 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.06 0.83 7.83 -51.93 -0.41 0.42 16 32 H 0.12 2.01 6.48 -51.93 -0.34 1.68 16 33 H 0.18 1.79 7.93 -52.49 -0.42 1.37 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 36 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 37 H 0.18 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 327.22 15.07 4.93 4.93 Total: -1.00 -34.42 327.22 -10.82 -45.24 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -5.12 Total: -1.04 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -1.88 Total: 2.25 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.65 Total: -52.55 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -12.20 SS G_CDS: -3.08 Total: -15.28 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.42 -10.82 -45.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793559935.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.791 kcal (2) G-P(sol) polarization free energy of solvation -34.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds