Wall clock time and date at job start Tue Mar 31 2020 00:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 120.00045 * 2 1 4 4 N 1.46899 * 109.47044 * 124.55314 * 3 2 1 5 5 C 1.46894 * 111.00348 * 164.25719 * 4 3 2 6 6 C 1.50699 * 109.47097 * 293.95567 * 5 4 3 7 7 H 1.07997 * 120.00033 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00018 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00291 * 359.97438 * 8 6 5 10 10 Si 1.86809 * 119.99879 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46861 * 89.99744 * 10 8 6 12 12 H 1.48497 * 109.47130 * 209.99857 * 10 8 6 13 13 H 1.48498 * 109.46991 * 329.99912 * 10 8 6 14 14 C 1.46900 * 111.00027 * 288.21252 * 4 3 2 15 15 N 1.46499 * 109.47689 * 171.47356 * 14 4 3 16 16 C 1.35944 * 119.93834 * 105.97350 * 15 14 4 17 17 C 1.35985 * 119.17112 * 179.77783 * 16 15 14 18 18 C 1.50701 * 120.46579 * 180.22927 * 17 16 15 19 19 C 1.39924 * 119.06861 * 0.47548 * 17 16 15 20 20 N 1.31697 * 119.82931 * 359.77400 * 19 17 16 21 21 C 1.33474 * 120.83916 * 359.97438 * 20 19 17 22 22 S 1.71196 * 119.51852 * 180.02562 * 21 20 19 23 23 H 1.07996 * 120.00494 * 185.06031 * 1 2 3 24 24 H 1.08009 * 119.99572 * 5.05430 * 1 2 3 25 25 H 1.07996 * 119.99754 * 180.02562 * 2 1 3 26 26 H 1.08995 * 109.47391 * 4.55223 * 3 2 1 27 27 H 1.08995 * 109.46810 * 244.54685 * 3 2 1 28 28 H 1.09000 * 109.47261 * 53.94905 * 5 4 3 29 29 H 1.09000 * 109.47590 * 173.95075 * 5 4 3 30 30 H 0.97000 * 120.00011 * 179.97438 * 9 8 6 31 31 H 1.09006 * 109.46981 * 291.47303 * 14 4 3 32 32 H 1.09002 * 109.47552 * 51.47144 * 14 4 3 33 33 H 1.07997 * 120.41464 * 0.02562 * 16 15 14 34 34 H 1.08999 * 109.46984 * 270.25263 * 18 17 16 35 35 H 1.09001 * 109.47086 * 30.25086 * 18 17 16 36 36 H 1.08994 * 109.47388 * 150.25447 * 18 17 16 37 37 H 1.08001 * 120.08290 * 179.79049 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9886 1.3364 1.1407 5 6 3.9917 2.3969 0.9761 6 6 4.8798 2.0706 -0.1969 7 1 4.7157 1.1658 -0.7632 8 6 5.9017 2.9273 -0.5471 9 7 6.1012 4.0294 0.1422 10 14 7.0030 2.5226 -2.0007 11 1 6.4241 3.1057 -3.2377 12 1 8.3552 3.0918 -1.7709 13 1 7.1051 1.0486 -2.1490 14 6 2.2591 1.4936 2.4060 15 7 3.1841 1.3173 3.5283 16 6 3.5922 2.3967 4.2470 17 6 4.4475 2.2146 5.2884 18 6 4.9146 3.3898 6.1080 19 6 4.8918 0.9213 5.5852 20 7 4.4758 -0.0966 4.8605 21 6 3.6323 0.0875 3.8426 22 16 3.1129 -1.2600 2.9233 23 1 -0.5401 -0.9316 0.0825 24 1 -0.5400 0.9318 -0.0824 25 1 1.8499 -0.9353 -0.0004 26 1 1.3581 2.1320 0.0816 27 1 2.6276 1.3989 -0.9279 28 1 3.4894 3.3477 0.7981 29 1 4.5960 2.4690 1.8804 30 1 6.8205 4.6319 -0.1040 31 1 1.8195 2.4901 2.4506 32 1 1.4690 0.7450 2.4654 33 1 3.2385 3.3858 3.9965 34 1 5.8237 3.8007 5.6687 35 1 4.1389 4.1554 6.1203 36 1 5.1193 3.0634 7.1276 37 1 5.5738 0.7584 6.4065 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793559935.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:33 Heat of formation + Delta-G solvation = 73.581792 kcal Electronic energy + Delta-G solvation = -19845.454167 eV Core-core repulsion = 16942.927620 eV Total energy + Delta-G solvation = -2902.526547 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 5.28 seconds Orbital eigenvalues (eV) -42.79646 -39.08692 -36.44492 -35.10828 -35.02654 -33.62787 -29.73080 -28.90209 -28.13986 -26.30671 -25.42344 -24.43552 -22.47403 -20.60275 -19.50075 -19.49162 -18.72597 -17.91162 -17.33714 -16.70845 -16.09008 -16.07244 -15.54906 -15.16593 -14.82962 -14.73249 -14.21143 -14.00194 -13.88360 -13.72822 -13.40850 -13.02610 -12.87089 -12.73629 -12.65140 -12.40814 -12.29415 -12.05867 -11.70163 -11.46371 -11.12194 -11.02007 -10.67707 -10.15460 -9.22252 -8.69412 -8.40995 -8.27521 -6.34620 -0.83924 -0.22828 0.89064 1.34094 1.36133 1.40394 1.46757 1.49090 2.09937 2.34724 2.97110 3.04372 3.13021 3.38574 3.45474 3.75353 3.84761 4.10319 4.15160 4.20505 4.28210 4.53109 4.68939 4.75880 4.91612 4.95666 5.01560 5.04173 5.10343 5.16049 5.22085 5.43760 5.57660 5.80149 5.87619 5.99168 6.23391 6.39005 6.48004 6.77569 7.33913 8.81274 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.011946 B = 0.007749 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.390724 B = 3612.484818 C = 4972.238513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 C 0.104 3.896 4 N -0.542 5.542 5 C 0.212 3.788 6 C -0.525 4.525 7 H 0.047 0.953 8 C 0.017 3.983 9 N -0.920 5.920 10 Si 0.953 3.047 11 H -0.268 1.268 12 H -0.278 1.278 13 H -0.281 1.281 14 C 0.258 3.742 15 N -0.432 5.432 16 C 0.152 3.848 17 C -0.193 4.193 18 C -0.092 4.092 19 C 0.225 3.775 20 N -0.520 5.520 21 C 0.461 3.539 22 S -0.660 6.660 23 H 0.104 0.896 24 H 0.112 0.888 25 H 0.085 0.915 26 H 0.051 0.949 27 H 0.073 0.927 28 H -0.016 1.016 29 H 0.006 0.994 30 H 0.266 0.734 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.213 0.787 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.734 5.627 12.922 15.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.153 4.153 3 C -0.023 4.023 4 N -0.267 5.267 5 C 0.086 3.914 6 C -0.563 4.563 7 H 0.066 0.934 8 C -0.183 4.183 9 N -0.560 5.560 10 Si 0.779 3.221 11 H -0.193 1.193 12 H -0.203 1.203 13 H -0.206 1.206 14 C 0.046 3.954 15 N -0.115 5.115 16 C 0.011 3.989 17 C -0.204 4.204 18 C -0.150 4.150 19 C 0.043 3.957 20 N -0.236 5.236 21 C 0.106 3.894 22 S -0.517 6.517 23 H 0.122 0.878 24 H 0.130 0.870 25 H 0.103 0.897 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.001 0.999 29 H 0.024 0.976 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.132 0.868 33 H 0.230 0.770 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -6.721 3.435 12.124 14.281 hybrid contribution 0.619 1.681 -0.760 1.946 sum -6.102 5.116 11.364 13.876 Atomic orbital electron populations 1.23853 0.94705 1.02678 1.01410 1.22755 0.95962 0.97657 0.98925 1.20938 0.93213 0.94721 0.93456 1.61680 1.15374 1.49252 1.00406 1.19409 0.89262 0.86867 0.95816 1.21325 1.14704 1.06365 1.13941 0.93427 1.25609 0.98445 0.94867 0.99357 1.69976 1.32583 1.12301 1.41153 0.85624 0.78421 0.78050 0.80024 1.19326 1.20315 1.20622 1.22751 0.88755 1.02900 0.80981 1.46128 1.34314 1.06281 1.24766 1.23667 0.92462 0.93543 0.89276 1.21127 1.00599 0.99180 0.99473 1.20734 1.02511 0.92587 0.99162 1.24911 0.89670 0.87284 0.93847 1.70044 1.12903 1.34425 1.06275 1.23371 0.87556 0.87841 0.90681 1.92809 1.70218 1.32272 1.56392 0.87786 0.87029 0.89655 0.93113 0.90882 0.99875 0.97589 0.92524 0.88573 0.86775 0.77039 0.90275 0.89015 0.87691 0.75713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.22 14.31 67.78 0.97 -4.25 16 2 C -0.13 -4.72 8.82 25.65 0.23 -4.49 16 3 C 0.10 3.94 5.26 85.56 0.45 4.39 16 4 N -0.54 -22.73 4.03 -917.77 -3.70 -26.43 16 5 C 0.21 10.27 4.61 85.56 0.39 10.66 16 6 C -0.53 -29.29 8.29 25.60 0.21 -29.08 16 7 H 0.05 2.79 7.25 -2.91 -0.02 2.77 16 8 C 0.02 0.91 5.46 84.65 0.46 1.38 16 9 N -0.92 -51.23 13.29 21.45 0.28 -50.94 16 10 Si 0.95 44.34 29.54 68.60 2.03 46.37 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 14 C 0.26 8.57 4.49 170.81 0.77 9.34 16 15 N -0.43 -14.17 2.26 -538.66 -1.21 -15.39 16 16 C 0.15 3.52 8.94 83.53 0.75 4.27 16 17 C -0.19 -3.52 5.87 -19.98 -0.12 -3.63 16 18 C -0.09 -0.81 10.04 71.24 0.71 -0.10 16 19 C 0.22 4.91 11.00 85.12 0.94 5.84 16 20 N -0.52 -18.18 10.39 -197.56 -2.05 -20.24 16 21 C 0.46 18.42 7.60 179.51 1.37 19.79 16 22 S -0.66 -32.01 28.66 -56.49 -1.62 -33.63 16 23 H 0.10 2.65 8.06 -2.91 -0.02 2.63 16 24 H 0.11 2.57 7.86 -2.91 -0.02 2.54 16 25 H 0.09 3.55 8.06 -2.91 -0.02 3.53 16 26 H 0.05 1.65 7.71 -2.39 -0.02 1.63 16 27 H 0.07 3.16 6.59 -2.39 -0.02 3.14 16 28 H -0.02 -0.81 8.12 -2.39 -0.02 -0.83 16 29 H 0.01 0.31 6.47 -2.39 -0.02 0.30 16 30 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 31 H 0.10 2.47 7.83 -2.38 -0.02 2.45 16 32 H 0.11 3.93 6.48 -2.39 -0.02 3.92 16 33 H 0.21 3.36 7.93 -2.91 -0.02 3.33 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 0.53 8.09 -2.39 -0.02 0.51 16 36 H 0.10 0.39 8.10 -2.39 -0.02 0.37 16 37 H 0.23 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -80.93 327.22 1.91 -79.02 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.05 Total: 7.14 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 7.13 Total: 14.10 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -6.68 Total: -113.00 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: -32.01 SS G_CDS: -1.62 Total: -33.63 kcal Total: -80.93 1.91 -79.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793559935.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.604 kcal (2) G-P(sol) polarization free energy of solvation -80.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.29 seconds