Wall clock time and date at job start Tue Mar 31 2020 01:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46905 * 109.46589 * 2 1 4 4 C 1.46899 * 111.00210 * 69.84610 * 3 2 1 5 5 C 1.50700 * 109.47159 * 70.24623 * 4 3 2 6 6 H 1.07996 * 119.99971 * 355.13051 * 5 4 3 7 7 C 1.37879 * 119.99715 * 175.12243 * 5 4 3 8 8 N 1.31505 * 120.00454 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99724 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47074 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47044 * 120.00215 * 9 7 5 12 12 H 1.48499 * 109.47152 * 240.00182 * 9 7 5 13 13 C 1.46897 * 111.00105 * 305.88990 * 3 2 1 14 14 H 1.08994 * 110.26957 * 61.79385 * 13 3 2 15 15 C 1.54350 * 110.30385 * 299.72661 * 13 3 2 16 16 C 1.54343 * 102.57153 * 267.32502 * 15 13 3 17 17 C 1.51679 * 105.02274 * 333.88560 * 16 15 13 18 18 C 1.38470 * 130.29712 * 197.11261 * 17 16 15 19 19 C 1.38225 * 120.20473 * 179.78453 * 18 17 16 20 20 Cl 1.73597 * 120.04875 * 179.97438 * 19 18 17 21 21 C 1.38373 * 119.90558 * 0.02562 * 19 18 17 22 22 C 1.38081 * 119.92069 * 0.02562 * 21 19 18 23 23 C 1.38230 * 109.83694 * 16.92679 * 17 16 15 24 24 H 1.09005 * 109.46597 * 185.22372 * 1 2 3 25 25 H 1.08997 * 109.47678 * 305.22365 * 1 2 3 26 26 H 1.09001 * 109.47334 * 65.22520 * 1 2 3 27 27 H 1.08997 * 109.47487 * 240.00301 * 2 1 3 28 28 H 1.09003 * 109.47130 * 119.99169 * 2 1 3 29 29 H 1.09005 * 109.47118 * 190.24735 * 4 3 2 30 30 H 1.08997 * 109.46988 * 310.24717 * 4 3 2 31 31 H 0.97002 * 120.00678 * 179.97438 * 8 7 5 32 32 H 1.09005 * 110.81840 * 25.64415 * 15 13 3 33 33 H 1.09000 * 110.82402 * 148.99584 * 15 13 3 34 34 H 1.08999 * 110.30748 * 92.66952 * 16 15 13 35 35 H 1.09000 * 110.30321 * 214.81933 * 16 15 13 36 36 H 1.08001 * 119.90014 * 359.80433 * 18 17 16 37 37 H 1.07998 * 120.04012 * 179.97438 * 21 19 18 38 38 H 1.07995 * 119.88007 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 1.7495 2.0389 1.2874 5 6 2.6354 1.4413 2.3500 6 1 3.2725 0.6022 2.1126 7 6 2.6326 1.9659 3.6251 8 7 1.8565 2.9874 3.9142 9 14 3.7313 1.2255 4.9420 10 1 4.5015 0.0943 4.3655 11 1 4.6717 2.2606 5.4414 12 1 2.8944 0.7335 6.0657 13 6 1.4370 2.1494 -1.1110 14 1 0.3529 2.1975 -1.0087 15 6 1.8193 1.5071 -2.4615 16 6 3.1016 2.2744 -2.8473 17 6 2.9821 3.6158 -2.1496 18 6 3.6565 4.8045 -2.3726 19 6 3.3752 5.9183 -1.6039 20 17 4.2236 7.4063 -1.8864 21 6 2.4172 5.8453 -0.6081 22 6 1.7451 4.6600 -0.3845 23 6 2.0250 3.5435 -1.1549 24 1 -0.3633 -1.0235 0.0936 25 1 -0.3634 0.5927 0.8395 26 1 -0.3634 0.4306 -0.9331 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8901 29 1 1.9532 3.1064 1.2026 30 1 0.7046 1.8889 1.5590 31 1 1.8542 3.3562 4.8113 32 1 2.0258 0.4437 -2.3400 33 1 1.0351 1.6657 -3.2018 34 1 3.9831 1.7411 -2.4914 35 1 3.1510 2.4093 -3.9278 36 1 4.4043 4.8616 -3.1497 37 1 2.1960 6.7142 -0.0059 38 1 0.9973 4.6039 0.3926 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795926268.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:06 Heat of formation + Delta-G solvation = 21.874777 kcal Electronic energy + Delta-G solvation = -19944.076136 eV Core-core repulsion = 17004.970947 eV Total energy + Delta-G solvation = -2939.105189 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.13251 -37.37583 -36.16642 -34.30383 -32.49923 -31.08304 -29.34614 -28.46658 -27.19260 -25.20687 -23.18684 -22.53436 -21.18393 -20.54354 -18.81740 -16.31271 -16.13820 -15.89277 -15.46681 -15.19164 -14.45382 -14.08122 -13.65672 -13.22312 -13.09724 -13.00799 -12.91069 -12.48100 -11.91208 -11.71964 -11.46389 -11.40966 -11.18823 -11.06935 -10.98903 -10.81667 -10.69528 -10.53758 -10.49164 -10.34001 -10.07373 -9.69211 -9.16653 -8.54271 -8.36255 -8.16873 -7.18629 -6.01888 -4.01202 1.48022 1.63257 2.32872 3.31062 3.38933 3.43241 3.91085 4.43685 4.68537 4.83072 5.00516 5.19347 5.33205 5.34733 5.40708 5.56318 5.62184 5.69031 5.79493 5.88352 5.91260 5.99120 6.08713 6.15944 6.17904 6.31567 6.36931 6.44610 6.52377 6.57959 6.64792 6.82663 6.98558 7.12521 7.31751 7.38095 7.81360 8.11153 8.21560 8.55170 9.05092 9.61886 11.08943 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013996 B = 0.006422 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.066041 B = 4359.262562 C = 5756.783463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 N -0.521 5.521 4 C 0.180 3.820 5 C -0.501 4.501 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.116 3.884 14 H 0.045 0.955 15 C -0.117 4.117 16 C -0.069 4.069 17 C -0.075 4.075 18 C -0.109 4.109 19 C -0.034 4.034 20 Cl -0.085 7.085 21 C -0.114 4.114 22 C -0.074 4.074 23 C -0.065 4.065 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.045 0.955 30 H -0.008 1.008 31 H 0.260 0.740 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.492 1.664 -13.426 13.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.072 4.072 3 N -0.245 5.245 4 C 0.055 3.945 5 C -0.539 4.539 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C 0.008 3.992 14 H 0.063 0.937 15 C -0.155 4.155 16 C -0.106 4.106 17 C -0.076 4.076 18 C -0.128 4.128 19 C -0.061 4.061 20 Cl -0.056 7.056 21 C -0.133 4.133 22 C -0.093 4.093 23 C -0.065 4.065 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.010 0.990 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.052 1.891 -13.364 13.497 hybrid contribution -0.201 -0.017 1.151 1.168 sum -0.149 1.874 -12.213 12.357 Atomic orbital electron populations 1.22410 0.99494 1.01335 1.01540 1.22078 0.91911 0.91447 1.01734 1.62443 1.56769 1.01090 1.04183 1.19982 0.94976 0.95897 0.83661 1.21164 1.23357 1.15733 0.93688 0.92053 1.24939 0.95881 0.95138 0.98560 1.69941 1.39161 1.24178 1.20537 0.86505 0.80509 0.79163 0.81629 1.19728 1.21087 1.21189 1.21053 0.96153 0.89229 0.92789 0.93704 1.22411 0.96785 1.00592 0.95723 1.20996 0.99413 0.91527 0.98678 1.20522 0.95565 0.94275 0.97249 1.20300 1.01066 0.90884 1.00530 1.20635 0.98083 0.87487 0.99870 1.98333 1.77212 1.34207 1.95871 1.20868 0.96264 0.98802 0.97316 1.20756 0.99667 0.91006 0.97832 1.20540 0.96615 0.94639 0.94730 0.93223 0.91865 0.93517 0.92459 0.89852 0.93672 0.99037 0.93084 0.89752 0.91504 0.89631 0.91340 0.85748 0.85166 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 9.09 37.16 0.34 -2.75 16 2 C 0.06 1.02 5.60 -3.82 -0.02 1.00 16 3 N -0.52 -10.62 4.54 -228.22 -1.04 -11.66 16 4 C 0.18 4.46 4.48 -4.98 -0.02 4.44 16 5 C -0.50 -13.78 8.51 -34.44 -0.29 -14.07 16 6 H 0.06 1.69 7.29 -52.49 -0.38 1.31 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.12 2.01 1.97 -67.83 -0.13 1.88 16 14 H 0.05 0.79 6.49 -51.93 -0.34 0.45 16 15 C -0.12 -1.61 6.53 -25.32 -0.17 -1.77 16 16 C -0.07 -0.93 6.80 -26.70 -0.18 -1.12 16 17 C -0.08 -1.20 6.14 -104.06 -0.64 -1.84 16 18 C -0.11 -1.65 9.82 -39.50 -0.39 -2.04 16 19 C -0.03 -0.53 6.32 -39.54 -0.25 -0.78 16 20 Cl -0.08 -1.17 28.96 -51.86 -1.50 -2.67 16 21 C -0.11 -1.88 9.83 -39.59 -0.39 -2.27 16 22 C -0.07 -1.34 8.33 -39.54 -0.33 -1.67 16 23 C -0.06 -1.15 5.12 -104.19 -0.53 -1.69 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 1.19 6.33 -51.93 -0.33 0.86 16 26 H 0.05 0.69 6.67 -51.93 -0.35 0.34 16 27 H 0.06 0.89 6.22 -51.93 -0.32 0.56 16 28 H 0.08 1.67 6.88 -51.93 -0.36 1.31 16 29 H 0.05 1.19 4.70 -51.93 -0.24 0.94 16 30 H -0.01 -0.21 6.20 -51.93 -0.32 -0.53 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.08 1.11 5.85 -51.93 -0.30 0.81 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.13 1.94 8.06 -52.49 -0.42 1.51 16 38 H 0.13 2.51 7.41 -52.49 -0.39 2.12 16 LS Contribution 312.70 15.07 4.71 4.71 Total: -1.00 -28.96 312.70 -10.22 -39.19 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.01 Total: 0.45 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -3.11 Total: -21.22 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: -0.30 Total: -37.07 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.50 Total: -2.67 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.96 -10.22 -39.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795926268.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.060 kcal (2) G-P(sol) polarization free energy of solvation -28.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds