Wall clock time and date at job start Tue Mar 31 2020 01:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46905 * 109.46589 * 2 1 4 4 C 1.46899 * 111.00210 * 69.84610 * 3 2 1 5 5 C 1.50700 * 109.47159 * 70.24623 * 4 3 2 6 6 H 1.07996 * 119.99971 * 355.13051 * 5 4 3 7 7 C 1.37879 * 119.99715 * 175.12243 * 5 4 3 8 8 N 1.31505 * 120.00454 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99724 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47074 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47044 * 120.00215 * 9 7 5 12 12 H 1.48499 * 109.47152 * 240.00182 * 9 7 5 13 13 C 1.46897 * 111.00105 * 305.88990 * 3 2 1 14 14 H 1.08994 * 110.26957 * 61.79385 * 13 3 2 15 15 C 1.54350 * 110.30385 * 299.72661 * 13 3 2 16 16 C 1.54343 * 102.57153 * 267.32502 * 15 13 3 17 17 C 1.51679 * 105.02274 * 333.88560 * 16 15 13 18 18 C 1.38470 * 130.29712 * 197.11261 * 17 16 15 19 19 C 1.38225 * 120.20473 * 179.78453 * 18 17 16 20 20 Cl 1.73597 * 120.04875 * 179.97438 * 19 18 17 21 21 C 1.38373 * 119.90558 * 0.02562 * 19 18 17 22 22 C 1.38081 * 119.92069 * 0.02562 * 21 19 18 23 23 C 1.38230 * 109.83694 * 16.92679 * 17 16 15 24 24 H 1.09005 * 109.46597 * 185.22372 * 1 2 3 25 25 H 1.08997 * 109.47678 * 305.22365 * 1 2 3 26 26 H 1.09001 * 109.47334 * 65.22520 * 1 2 3 27 27 H 1.08997 * 109.47487 * 240.00301 * 2 1 3 28 28 H 1.09003 * 109.47130 * 119.99169 * 2 1 3 29 29 H 1.09005 * 109.47118 * 190.24735 * 4 3 2 30 30 H 1.08997 * 109.46988 * 310.24717 * 4 3 2 31 31 H 0.97002 * 120.00678 * 179.97438 * 8 7 5 32 32 H 1.09005 * 110.81840 * 25.64415 * 15 13 3 33 33 H 1.09000 * 110.82402 * 148.99584 * 15 13 3 34 34 H 1.08999 * 110.30748 * 92.66952 * 16 15 13 35 35 H 1.09000 * 110.30321 * 214.81933 * 16 15 13 36 36 H 1.08001 * 119.90014 * 359.80433 * 18 17 16 37 37 H 1.07998 * 120.04012 * 179.97438 * 21 19 18 38 38 H 1.07995 * 119.88007 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 1.7495 2.0389 1.2874 5 6 2.6354 1.4413 2.3500 6 1 3.2725 0.6022 2.1126 7 6 2.6326 1.9659 3.6251 8 7 1.8565 2.9874 3.9142 9 14 3.7313 1.2255 4.9420 10 1 4.5015 0.0943 4.3655 11 1 4.6717 2.2606 5.4414 12 1 2.8944 0.7335 6.0657 13 6 1.4370 2.1494 -1.1110 14 1 0.3529 2.1975 -1.0087 15 6 1.8193 1.5071 -2.4615 16 6 3.1016 2.2744 -2.8473 17 6 2.9821 3.6158 -2.1496 18 6 3.6565 4.8045 -2.3726 19 6 3.3752 5.9183 -1.6039 20 17 4.2236 7.4063 -1.8864 21 6 2.4172 5.8453 -0.6081 22 6 1.7451 4.6600 -0.3845 23 6 2.0250 3.5435 -1.1549 24 1 -0.3633 -1.0235 0.0936 25 1 -0.3634 0.5927 0.8395 26 1 -0.3634 0.4306 -0.9331 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8901 29 1 1.9532 3.1064 1.2026 30 1 0.7046 1.8889 1.5590 31 1 1.8542 3.3562 4.8113 32 1 2.0258 0.4437 -2.3400 33 1 1.0351 1.6657 -3.2018 34 1 3.9831 1.7411 -2.4914 35 1 3.1510 2.4093 -3.9278 36 1 4.4043 4.8616 -3.1497 37 1 2.1960 6.7142 -0.0059 38 1 0.9973 4.6039 0.3926 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795926268.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:06 Heat of formation + Delta-G solvation = 6.270661 kcal Electronic energy + Delta-G solvation = -19944.752781 eV Core-core repulsion = 17004.970947 eV Total energy + Delta-G solvation = -2939.781834 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.42134 -38.76330 -37.41841 -35.68491 -34.48885 -32.37465 -30.91241 -29.72514 -28.82848 -26.75802 -24.87281 -23.84182 -22.68291 -21.79357 -20.23162 -18.33288 -17.48725 -17.29529 -16.82654 -16.65616 -16.22315 -15.46231 -14.98307 -14.76160 -14.49299 -14.34067 -14.19037 -14.02381 -13.50963 -13.14268 -12.95268 -12.80838 -12.68052 -12.61947 -12.38705 -12.30636 -12.17874 -12.11964 -11.78523 -11.66420 -11.60279 -11.26929 -11.14452 -10.56493 -9.76012 -9.45514 -8.81842 -8.16226 -6.23321 0.19293 0.35792 1.11867 1.38196 1.39795 1.51954 2.40530 2.61658 3.16349 3.42112 3.59209 3.62618 3.98539 4.13139 4.22670 4.29989 4.34516 4.40704 4.45217 4.61072 4.70860 4.73143 4.82656 4.93883 5.02177 5.06677 5.09817 5.18595 5.23423 5.27562 5.29447 5.42050 5.46001 5.54192 5.68387 5.72995 5.86902 6.14337 6.47773 6.72600 6.92395 7.44312 8.93949 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013996 B = 0.006422 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.066041 B = 4359.262562 C = 5756.783463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.054 3.946 3 N -0.528 5.528 4 C 0.195 3.805 5 C -0.514 4.514 6 H 0.057 0.943 7 C 0.003 3.997 8 N -0.931 5.931 9 Si 0.959 3.041 10 H -0.264 1.264 11 H -0.283 1.283 12 H -0.279 1.279 13 C 0.111 3.889 14 H 0.036 0.964 15 C -0.107 4.107 16 C -0.065 4.065 17 C -0.076 4.076 18 C -0.107 4.107 19 C -0.038 4.038 20 Cl -0.066 7.066 21 C -0.124 4.124 22 C -0.097 4.097 23 C -0.092 4.092 24 H 0.072 0.928 25 H 0.026 0.974 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.026 0.974 30 H -0.036 1.036 31 H 0.261 0.739 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.153 0.847 37 H 0.137 0.863 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.815 0.666 -15.587 15.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.073 4.073 3 N -0.251 5.251 4 C 0.069 3.931 5 C -0.552 4.552 6 H 0.075 0.925 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.785 3.215 10 H -0.188 1.188 11 H -0.209 1.209 12 H -0.205 1.205 13 C 0.003 3.997 14 H 0.054 0.946 15 C -0.145 4.145 16 C -0.102 4.102 17 C -0.077 4.077 18 C -0.125 4.125 19 C -0.064 4.064 20 Cl -0.038 7.038 21 C -0.143 4.143 22 C -0.115 4.115 23 C -0.093 4.093 24 H 0.091 0.909 25 H 0.045 0.955 26 H 0.084 0.916 27 H 0.111 0.889 28 H 0.075 0.925 29 H 0.044 0.956 30 H -0.019 1.019 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.171 0.829 37 H 0.155 0.845 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.357 0.880 -15.544 15.628 hybrid contribution -0.621 0.356 1.778 1.917 sum 0.736 1.236 -13.766 13.841 Atomic orbital electron populations 1.22298 0.98299 1.02229 1.00940 1.22137 0.92949 0.90103 1.02131 1.62339 1.57654 1.02184 1.02970 1.19598 0.92716 0.95067 0.85732 1.21497 1.23407 1.15563 0.94764 0.92464 1.25781 0.97276 0.95571 1.00851 1.70069 1.40662 1.25476 1.21050 0.85486 0.78698 0.78494 0.78871 1.18843 1.20876 1.20512 1.21225 0.95547 0.89315 0.93595 0.94624 1.22441 0.97742 1.00740 0.93558 1.21070 0.98958 0.89597 1.00543 1.20900 0.94497 0.95726 0.96579 1.20638 1.01026 0.90196 1.00639 1.20753 0.97681 0.88591 0.99396 1.98337 1.76625 1.33087 1.95703 1.20969 0.96689 0.98527 0.98070 1.20708 1.00226 0.92474 0.98136 1.20759 0.98039 0.94674 0.95783 0.90888 0.95498 0.91635 0.88889 0.92503 0.95624 1.01878 0.93029 0.88761 0.88921 0.89865 0.87761 0.82886 0.84496 0.87425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.76 9.09 71.98 0.65 -5.10 16 2 C 0.05 1.92 5.60 86.30 0.48 2.41 16 3 N -0.53 -21.71 4.54 -875.96 -3.98 -25.69 16 4 C 0.19 10.15 4.48 85.56 0.38 10.54 16 5 C -0.51 -29.12 8.51 25.60 0.22 -28.90 16 6 H 0.06 3.21 7.29 -2.91 -0.02 3.19 16 7 C 0.00 0.16 5.46 84.66 0.46 0.63 16 8 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 9 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 10 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 C 0.11 3.81 1.97 44.84 0.09 3.90 16 14 H 0.04 1.27 6.49 -2.39 -0.02 1.26 16 15 C -0.11 -2.60 6.53 31.51 0.21 -2.39 16 16 C -0.06 -1.52 6.80 30.62 0.21 -1.31 16 17 C -0.08 -2.29 6.14 -19.50 -0.12 -2.41 16 18 C -0.11 -2.99 9.82 22.32 0.22 -2.77 16 19 C -0.04 -1.13 6.32 22.30 0.14 -0.99 16 20 Cl -0.07 -1.72 28.96 -2.72 -0.08 -1.80 16 21 C -0.12 -4.19 9.83 22.26 0.22 -3.98 16 22 C -0.10 -3.70 8.33 22.30 0.19 -3.51 16 23 C -0.09 -3.31 5.12 -19.59 -0.10 -3.41 16 24 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 25 H 0.03 1.04 6.33 -2.39 -0.02 1.03 16 26 H 0.06 1.84 6.67 -2.39 -0.02 1.82 16 27 H 0.09 2.63 6.22 -2.39 -0.01 2.61 16 28 H 0.06 2.30 6.88 -2.39 -0.02 2.28 16 29 H 0.03 1.44 4.70 -2.38 -0.01 1.43 16 30 H -0.04 -2.05 6.20 -2.39 -0.01 -2.07 16 31 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.09 2.10 5.85 -2.38 -0.01 2.09 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 37 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 38 H 0.11 4.52 7.41 -2.91 -0.02 4.50 16 Total: -1.00 -64.58 312.70 2.57 -62.01 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.07 Total: 11.62 kcal Atomic # 6 Polarization: -40.55 SS G_CDS: 3.25 Total: -37.30 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -3.70 Total: -81.57 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.08 Total: -1.80 kcal Total: -64.58 2.57 -62.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795926268.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.285 kcal (2) G-P(sol) polarization free energy of solvation -64.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds