Wall clock time and date at job start Tue Mar 31 2020 00:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 F 1.39900 * 113.28175 * 2 1 4 4 C 1.53496 * 114.20639 * 226.92918 * 2 1 3 5 5 N 1.47070 * 87.98372 * 220.34678 * 4 2 1 6 6 C 1.34783 * 136.05510 * 207.08646 * 5 4 2 7 7 O 1.21579 * 119.99765 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99594 * 179.97438 * 6 5 4 9 9 C 1.39458 * 119.99379 * 184.14376 * 8 6 5 10 10 C 1.38649 * 119.64462 * 174.26558 * 9 8 6 11 11 C 1.40820 * 118.67436 * 179.97438 * 10 9 8 12 12 C 1.41540 * 120.99852 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00097 * 18.35441 * 12 11 10 14 14 C 1.40038 * 120.00017 * 198.36358 * 12 11 10 15 15 N 1.30744 * 119.99790 * 19.08633 * 14 12 11 16 16 Si 1.86798 * 119.99738 * 199.08695 * 14 12 11 17 17 H 1.48494 * 109.47366 * 60.00147 * 16 14 12 18 18 H 1.48507 * 109.46545 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47059 * 299.99606 * 16 14 12 20 20 C 1.41169 * 118.00421 * 0.02562 * 11 10 9 21 21 C 1.36592 * 119.12821 * 359.97438 * 20 11 10 22 22 N 1.32069 * 121.25705 * 359.74446 * 21 20 11 23 23 C 1.47069 * 87.88453 * 27.34170 * 5 4 2 24 24 H 1.09001 * 109.46620 * 193.06955 * 1 2 3 25 25 H 1.08992 * 109.47227 * 313.07011 * 1 2 3 26 26 H 1.09002 * 109.46934 * 73.07229 * 1 2 3 27 27 H 1.09002 * 113.46261 * 105.56712 * 4 2 1 28 28 H 1.08992 * 113.46950 * 335.12654 * 4 2 1 29 29 H 0.96995 * 120.00100 * 4.42187 * 8 6 5 30 30 H 1.07999 * 120.66259 * 359.96318 * 10 9 8 31 31 H 0.97000 * 119.99579 * 180.02562 * 15 14 12 32 32 H 1.08003 * 120.43473 * 179.97438 * 20 11 10 33 33 H 1.07998 * 119.36891 * 180.02562 * 21 20 11 34 34 H 1.08996 * 113.46347 * 87.44010 * 23 5 4 35 35 H 1.09002 * 113.46708 * 217.87572 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 2.0830 1.2851 0.0000 4 6 2.1594 -0.9561 -1.0227 5 7 3.1599 -1.3053 -0.0029 6 6 4.4332 -1.7474 -0.0039 7 8 5.0071 -1.9452 -1.0573 8 7 5.0700 -1.9701 1.1629 9 6 6.4135 -2.3442 1.1635 10 6 7.0939 -2.4553 2.3664 11 6 8.4498 -2.8350 2.3433 12 6 9.1915 -2.9630 3.5419 13 1 8.6779 -3.0639 4.4866 14 6 10.5913 -2.9585 3.5030 15 7 11.2147 -2.4745 2.4606 16 14 11.5678 -3.6439 4.9403 17 1 11.2191 -5.0736 5.1388 18 1 13.0201 -3.5243 4.6539 19 1 11.2407 -2.8792 6.1705 20 6 9.0473 -3.0830 1.0885 21 6 8.2960 -2.9475 -0.0441 22 7 7.0246 -2.5949 0.0150 23 6 2.1575 -0.9660 1.0184 24 1 -0.3632 -1.0011 0.2324 25 1 -0.3633 0.7017 0.7507 26 1 -0.3633 0.2992 -0.9832 27 1 2.5821 -0.4476 -1.8893 28 1 1.5102 -1.7876 -1.2964 29 1 4.5929 -1.8741 2.0019 30 1 6.5941 -2.2546 3.3025 31 1 12.1843 -2.4718 2.4335 32 1 10.0849 -3.3761 1.0251 33 1 8.7491 -3.1367 -1.0060 34 1 1.5077 -1.8003 1.2827 35 1 2.5786 -0.4662 1.8907 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871730658.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:26 Heat of formation + Delta-G solvation = 8.073624 kcal Electronic energy + Delta-G solvation = -20949.852476 eV Core-core repulsion = 17478.272106 eV Total energy + Delta-G solvation = -3471.580370 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.88969 -40.19780 -38.69339 -37.24431 -34.46578 -33.56038 -31.52261 -30.65898 -28.72823 -26.59304 -26.39290 -25.96413 -21.98013 -21.66485 -20.68754 -19.36416 -18.06363 -17.64570 -16.37497 -16.23591 -15.72728 -15.57271 -15.10007 -14.84120 -14.41180 -14.18194 -13.97765 -13.56571 -13.40494 -13.02032 -12.78894 -12.63124 -12.41608 -12.27189 -12.16919 -11.48922 -11.44382 -11.23296 -10.95765 -10.54580 -10.41515 -10.05616 -9.75328 -9.57116 -9.33642 -8.68615 -8.05858 -7.69412 -7.01880 -6.81780 -4.61619 2.53415 2.74477 2.78668 3.00456 3.02594 3.25922 3.60526 3.75924 3.81923 3.87055 4.12566 4.53036 4.57220 4.68362 5.06049 5.11327 5.21490 5.27917 5.34922 5.56029 5.61026 5.74003 5.86507 6.05336 6.58067 6.61395 6.80990 6.90440 7.15282 7.34330 7.45087 7.58244 7.88593 8.05733 8.29344 8.49820 8.73734 8.74864 9.09091 9.77156 10.02494 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.038026 B = 0.003474 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.153600 B = 8058.130909 C = 8464.571998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.076 3.924 3 F -0.179 7.179 4 C 0.110 3.890 5 N -0.670 5.670 6 C 0.726 3.274 7 O -0.521 6.521 8 N -0.664 5.664 9 C 0.368 3.632 10 C -0.311 4.311 11 C 0.145 3.855 12 C -0.452 4.452 13 H 0.081 0.919 14 C 0.078 3.922 15 N -0.778 5.778 16 Si 0.914 3.086 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.264 1.264 20 C -0.233 4.233 21 C 0.106 3.894 22 N -0.558 5.558 23 C 0.080 3.920 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.402 0.598 30 H 0.100 0.900 31 H 0.284 0.716 32 H 0.133 0.867 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.823 2.405 0.213 16.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.056 3.944 3 F -0.160 7.160 4 C -0.014 4.014 5 N -0.413 5.413 6 C 0.428 3.572 7 O -0.391 6.391 8 N -0.312 5.312 9 C 0.139 3.861 10 C -0.338 4.338 11 C 0.137 3.863 12 C -0.482 4.482 13 H 0.099 0.901 14 C -0.143 4.143 15 N -0.402 5.402 16 Si 0.738 3.262 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.188 1.188 20 C -0.257 4.257 21 C -0.044 4.044 22 N -0.278 5.278 23 C -0.045 4.045 24 H 0.101 0.899 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.236 0.764 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.151 0.849 33 H 0.139 0.861 34 H 0.118 0.882 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.339 2.349 -1.533 16.578 hybrid contribution 0.799 -0.157 1.940 2.104 sum -15.540 2.192 0.407 15.699 Atomic orbital electron populations 1.22048 0.91165 1.04147 1.04091 1.22080 0.93672 0.79509 0.99116 1.92897 1.87107 1.38993 1.96968 1.23367 0.87945 0.96258 0.93835 1.48721 1.09963 1.72629 1.10002 1.15354 0.78626 0.78167 0.85009 1.91041 1.63609 1.54714 1.29734 1.42477 1.10380 1.71005 1.07309 1.17745 0.82161 0.95320 0.90847 1.21063 0.97451 1.20615 0.94646 1.17553 0.89812 0.85507 0.93450 1.19564 0.90706 1.43735 0.94225 0.90060 1.26016 0.98583 0.92310 0.97352 1.69787 1.10883 1.30459 1.29103 0.86277 0.78096 0.80638 0.81235 1.18634 1.20154 1.18837 1.22104 1.02151 1.08862 0.92552 1.21610 0.88845 0.96534 0.97380 1.67186 1.11459 1.22889 1.26244 1.23670 0.89804 0.96824 0.94168 0.89931 0.90692 0.90656 0.89366 0.88442 0.76435 0.88193 0.90433 0.84945 0.86052 0.88231 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 9.67 37.16 0.36 -0.46 16 2 C 0.08 0.70 2.41 -89.97 -0.22 0.48 16 3 F -0.18 -2.28 17.33 2.25 0.04 -2.24 16 4 C 0.11 1.23 8.10 -8.50 -0.07 1.16 16 5 N -0.67 -9.96 3.69 -190.83 -0.70 -10.67 16 6 C 0.73 14.94 8.75 -86.91 -0.76 14.18 16 7 O -0.52 -13.20 15.38 5.30 0.08 -13.12 16 8 N -0.66 -13.45 5.39 -15.86 -0.09 -13.53 16 9 C 0.37 9.12 7.42 -154.68 -1.15 7.97 16 10 C -0.31 -7.72 9.74 -38.45 -0.37 -8.10 16 11 C 0.15 3.89 5.65 -106.55 -0.60 3.29 16 12 C -0.45 -11.70 9.12 -37.65 -0.34 -12.04 16 13 H 0.08 1.99 7.92 -52.49 -0.42 1.57 16 14 C 0.08 1.90 5.20 -17.34 -0.09 1.81 16 15 N -0.78 -19.58 10.71 55.55 0.59 -18.98 16 16 Si 0.91 17.96 29.60 -169.99 -5.03 12.93 16 17 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 18 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 19 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 20 C -0.23 -6.22 8.80 -39.06 -0.34 -6.57 16 21 C 0.11 2.77 11.10 -18.04 -0.20 2.57 16 22 N -0.56 -15.06 7.86 -12.76 -0.10 -15.16 16 23 C 0.08 0.76 7.79 -8.37 -0.07 0.70 16 24 H 0.08 0.28 7.89 -51.93 -0.41 -0.13 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.10 0.80 8.10 -51.93 -0.42 0.38 16 29 H 0.40 6.46 8.42 -40.82 -0.34 6.12 16 30 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 31 H 0.28 6.47 8.29 -40.82 -0.34 6.13 16 32 H 0.13 3.54 5.87 -52.48 -0.31 3.24 16 33 H 0.12 2.85 8.06 -52.49 -0.42 2.42 16 34 H 0.10 0.65 7.93 -51.93 -0.41 0.24 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 308.14 15.07 4.64 4.64 Total: -1.00 -34.38 308.14 -8.40 -42.77 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -3.98 Total: 8.38 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -3.85 Total: 4.98 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -0.29 Total: -58.34 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.08 Total: -13.12 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.38 -8.40 -42.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871730658.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.846 kcal (2) G-P(sol) polarization free energy of solvation -34.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds