Wall clock time and date at job start Tue Mar 31 2020 00:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 F 1.39900 * 113.28175 * 2 1 4 4 C 1.53496 * 114.20639 * 226.92918 * 2 1 3 5 5 N 1.47070 * 87.98372 * 220.34678 * 4 2 1 6 6 C 1.34783 * 136.05510 * 207.08646 * 5 4 2 7 7 O 1.21579 * 119.99765 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99594 * 179.97438 * 6 5 4 9 9 C 1.39458 * 119.99379 * 184.14376 * 8 6 5 10 10 C 1.38649 * 119.64462 * 174.26558 * 9 8 6 11 11 C 1.40820 * 118.67436 * 179.97438 * 10 9 8 12 12 C 1.41540 * 120.99852 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00097 * 18.35441 * 12 11 10 14 14 C 1.40038 * 120.00017 * 198.36358 * 12 11 10 15 15 N 1.30744 * 119.99790 * 19.08633 * 14 12 11 16 16 Si 1.86798 * 119.99738 * 199.08695 * 14 12 11 17 17 H 1.48494 * 109.47366 * 60.00147 * 16 14 12 18 18 H 1.48507 * 109.46545 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47059 * 299.99606 * 16 14 12 20 20 C 1.41169 * 118.00421 * 0.02562 * 11 10 9 21 21 C 1.36592 * 119.12821 * 359.97438 * 20 11 10 22 22 N 1.32069 * 121.25705 * 359.74446 * 21 20 11 23 23 C 1.47069 * 87.88453 * 27.34170 * 5 4 2 24 24 H 1.09001 * 109.46620 * 193.06955 * 1 2 3 25 25 H 1.08992 * 109.47227 * 313.07011 * 1 2 3 26 26 H 1.09002 * 109.46934 * 73.07229 * 1 2 3 27 27 H 1.09002 * 113.46261 * 105.56712 * 4 2 1 28 28 H 1.08992 * 113.46950 * 335.12654 * 4 2 1 29 29 H 0.96995 * 120.00100 * 4.42187 * 8 6 5 30 30 H 1.07999 * 120.66259 * 359.96318 * 10 9 8 31 31 H 0.97000 * 119.99579 * 180.02562 * 15 14 12 32 32 H 1.08003 * 120.43473 * 179.97438 * 20 11 10 33 33 H 1.07998 * 119.36891 * 180.02562 * 21 20 11 34 34 H 1.08996 * 113.46347 * 87.44010 * 23 5 4 35 35 H 1.09002 * 113.46708 * 217.87572 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 2.0830 1.2851 0.0000 4 6 2.1594 -0.9561 -1.0227 5 7 3.1599 -1.3053 -0.0029 6 6 4.4332 -1.7474 -0.0039 7 8 5.0071 -1.9452 -1.0573 8 7 5.0700 -1.9701 1.1629 9 6 6.4135 -2.3442 1.1635 10 6 7.0939 -2.4553 2.3664 11 6 8.4498 -2.8350 2.3433 12 6 9.1915 -2.9630 3.5419 13 1 8.6779 -3.0639 4.4866 14 6 10.5913 -2.9585 3.5030 15 7 11.2147 -2.4745 2.4606 16 14 11.5678 -3.6439 4.9403 17 1 11.2191 -5.0736 5.1388 18 1 13.0201 -3.5243 4.6539 19 1 11.2407 -2.8792 6.1705 20 6 9.0473 -3.0830 1.0885 21 6 8.2960 -2.9475 -0.0441 22 7 7.0246 -2.5949 0.0150 23 6 2.1575 -0.9660 1.0184 24 1 -0.3632 -1.0011 0.2324 25 1 -0.3633 0.7017 0.7507 26 1 -0.3633 0.2992 -0.9832 27 1 2.5821 -0.4476 -1.8893 28 1 1.5102 -1.7876 -1.2964 29 1 4.5929 -1.8741 2.0019 30 1 6.5941 -2.2546 3.3025 31 1 12.1843 -2.4718 2.4335 32 1 10.0849 -3.3761 1.0251 33 1 8.7491 -3.1367 -1.0060 34 1 1.5077 -1.8003 1.2827 35 1 2.5786 -0.4662 1.8907 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871730658.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:26 Heat of formation + Delta-G solvation = -14.535819 kcal Electronic energy + Delta-G solvation = -20950.832895 eV Core-core repulsion = 17478.272106 eV Total energy + Delta-G solvation = -3472.560789 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.77361 -41.59607 -40.27113 -38.78316 -36.30071 -35.37023 -32.63450 -32.44051 -30.37987 -28.02153 -27.57834 -27.24921 -23.74004 -23.49470 -21.82276 -20.70413 -19.80426 -19.04225 -17.86764 -17.27633 -17.10467 -16.81604 -16.45945 -16.19503 -16.05009 -15.87368 -15.59058 -14.80138 -14.72025 -14.49007 -14.23333 -14.00621 -13.38137 -13.20843 -13.10426 -13.00987 -12.94169 -12.79951 -12.38111 -12.05755 -11.88427 -11.55430 -11.33592 -11.22227 -11.18293 -10.05152 -9.88905 -9.63735 -8.89294 -8.68010 -6.59780 0.80907 0.97459 1.26382 1.40602 1.53288 1.59970 2.16396 2.18756 2.70384 2.78719 2.86788 3.19028 3.74316 3.82948 3.87480 4.01296 4.30118 4.42235 4.45963 4.60134 4.75039 4.79841 4.84456 4.88905 4.91190 5.00766 5.15739 5.23079 5.31005 5.49360 5.60105 5.92026 5.96851 6.20524 6.50520 6.76824 6.79366 6.85224 7.48813 7.87725 8.20359 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.038026 B = 0.003474 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.153600 B = 8058.130909 C = 8464.571998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.081 3.919 3 F -0.204 7.204 4 C 0.101 3.899 5 N -0.678 5.678 6 C 0.719 3.281 7 O -0.582 6.582 8 N -0.655 5.655 9 C 0.365 3.635 10 C -0.321 4.321 11 C 0.117 3.883 12 C -0.476 4.476 13 H 0.091 0.909 14 C 0.037 3.963 15 N -0.806 5.806 16 Si 0.993 3.007 17 H -0.258 1.258 18 H -0.267 1.267 19 H -0.254 1.254 20 C -0.253 4.253 21 C 0.098 3.902 22 N -0.588 5.588 23 C 0.080 3.920 24 H 0.110 0.890 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.135 0.865 29 H 0.420 0.580 30 H 0.123 0.877 31 H 0.295 0.705 32 H 0.125 0.875 33 H 0.136 0.864 34 H 0.144 0.856 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.703 2.162 2.154 18.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.062 3.938 3 F -0.185 7.185 4 C -0.022 4.022 5 N -0.420 5.420 6 C 0.421 3.579 7 O -0.456 6.456 8 N -0.304 5.304 9 C 0.135 3.865 10 C -0.347 4.347 11 C 0.109 3.891 12 C -0.506 4.506 13 H 0.109 0.891 14 C -0.182 4.182 15 N -0.431 5.431 16 Si 0.813 3.187 17 H -0.182 1.182 18 H -0.191 1.191 19 H -0.178 1.178 20 C -0.276 4.276 21 C -0.052 4.052 22 N -0.308 5.308 23 C -0.042 4.042 24 H 0.128 0.872 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.152 0.848 29 H 0.258 0.742 30 H 0.141 0.859 31 H 0.106 0.894 32 H 0.143 0.857 33 H 0.153 0.847 34 H 0.161 0.839 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.328 2.149 0.435 18.458 hybrid contribution 1.293 -0.012 1.305 1.837 sum -17.035 2.137 1.740 17.256 Atomic orbital electron populations 1.22068 0.87161 1.06191 1.04982 1.22311 0.96061 0.77820 0.97610 1.92856 1.87835 1.40813 1.96972 1.23818 0.87234 0.97994 0.93159 1.48758 1.09008 1.70481 1.13724 1.15546 0.80250 0.78049 0.84020 1.90987 1.65860 1.57311 1.31475 1.42297 1.08971 1.70562 1.08543 1.18019 0.83808 0.94296 0.90364 1.21251 0.97116 1.20700 0.95628 1.17973 0.91077 0.86109 0.93971 1.19928 0.91974 1.44429 0.94276 0.89136 1.26997 0.99074 0.91747 1.00361 1.69833 1.11854 1.30375 1.30988 0.85083 0.76582 0.79717 0.77355 1.18249 1.19123 1.17834 1.22083 1.01943 1.10474 0.93119 1.21875 0.89013 0.96303 0.97988 1.67288 1.11797 1.24206 1.27537 1.24126 0.88446 0.98271 0.93321 0.87160 0.89889 0.89883 0.91528 0.84752 0.74223 0.85929 0.89428 0.85720 0.84660 0.83891 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.67 71.98 0.70 -0.22 16 2 C 0.08 1.29 2.41 -10.37 -0.02 1.26 16 3 F -0.20 -4.97 17.33 44.97 0.78 -4.19 16 4 C 0.10 2.07 8.10 83.18 0.67 2.75 16 5 N -0.68 -19.37 3.69 -875.92 -3.23 -22.60 16 6 C 0.72 29.86 8.75 179.05 1.57 31.43 16 7 O -0.58 -30.49 15.38 -3.96 -0.06 -30.55 16 8 N -0.65 -26.52 5.39 -322.36 -1.74 -28.26 16 9 C 0.36 18.43 7.42 132.76 0.98 19.41 16 10 C -0.32 -16.10 9.74 23.00 0.22 -15.88 16 11 C 0.12 6.41 5.65 -21.11 -0.12 6.29 16 12 C -0.48 -24.76 9.12 23.52 0.21 -24.55 16 13 H 0.09 4.38 7.92 -2.91 -0.02 4.36 16 14 C 0.04 1.77 5.20 85.29 0.44 2.21 16 15 N -0.81 -40.87 10.71 21.84 0.23 -40.63 16 16 Si 0.99 35.90 29.60 68.60 2.03 37.93 16 17 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 18 H -0.27 -9.15 7.11 99.48 0.71 -8.44 16 19 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 20 C -0.25 -13.96 8.80 22.60 0.20 -13.76 16 21 C 0.10 5.31 11.10 84.27 0.94 6.25 16 22 N -0.59 -32.81 7.86 -194.27 -1.53 -34.34 16 23 C 0.08 1.29 7.79 83.27 0.65 1.94 16 24 H 0.11 0.13 7.89 -2.39 -0.02 0.11 16 25 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.13 1.78 8.10 -2.39 -0.02 1.76 16 29 H 0.42 13.08 8.42 -92.71 -0.78 12.30 16 30 H 0.12 5.39 8.06 -2.91 -0.02 5.37 16 31 H 0.29 13.36 8.29 -92.71 -0.77 12.59 16 32 H 0.13 6.95 5.87 -2.91 -0.02 6.93 16 33 H 0.14 6.64 8.06 -2.91 -0.02 6.62 16 34 H 0.14 1.14 7.93 -2.39 -0.02 1.12 16 35 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -78.70 308.14 3.28 -75.42 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: 0.35 Total: 30.12 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 6.44 Total: 17.12 kcal Atomic # 7 Polarization: -119.57 SS G_CDS: -6.26 Total: -125.83 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.06 Total: -30.55 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.78 Total: -4.19 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 2.03 Total: 37.93 kcal Total: -78.70 3.28 -75.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871730658.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.879 kcal (2) G-P(sol) polarization free energy of solvation -78.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds