Wall clock time and date at job start Tue Mar 31 2020 01:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47351 * 2 1 4 4 C 1.50708 * 109.47035 * 239.99621 * 2 1 3 5 5 H 1.07994 * 119.99991 * 240.00659 * 4 2 1 6 6 C 1.37882 * 119.99527 * 60.00203 * 4 2 1 7 7 N 1.31519 * 119.99793 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00282 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47107 * 269.99750 * 8 6 4 10 10 H 1.48497 * 109.47333 * 149.99815 * 8 6 4 11 11 H 1.48500 * 109.47250 * 29.99551 * 8 6 4 12 12 C 1.50694 * 109.46874 * 120.00243 * 2 1 3 13 13 O 1.21288 * 120.00471 * 34.38338 * 12 2 1 14 14 N 1.34778 * 119.99911 * 214.38085 * 12 2 1 15 15 C 1.47024 * 125.64761 * 4.88185 * 14 12 2 16 16 C 1.54333 * 107.26654 * 178.84682 * 15 14 12 17 17 C 1.55153 * 103.02059 * 338.13598 * 16 15 14 18 18 C 1.52995 * 111.00709 * 277.23500 * 17 16 15 19 19 C 1.53001 * 111.00558 * 153.38114 * 17 16 15 20 20 F 1.39898 * 109.47124 * 307.80493 * 19 17 16 21 21 F 1.39895 * 109.46985 * 67.80397 * 19 17 16 22 22 F 1.39902 * 109.47169 * 187.80394 * 19 17 16 23 23 C 1.47421 * 125.64919 * 185.18032 * 14 12 2 24 24 H 1.08993 * 109.47594 * 174.03053 * 1 2 3 25 25 H 1.08997 * 109.47133 * 294.03555 * 1 2 3 26 26 H 1.09011 * 109.46615 * 54.02892 * 1 2 3 27 27 H 0.96990 * 119.99800 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.87777 * 298.39150 * 15 14 12 29 29 H 1.09004 * 109.88424 * 59.55136 * 15 14 12 30 30 H 1.08998 * 110.85054 * 219.66837 * 16 15 14 31 31 H 1.09001 * 110.66746 * 96.51688 * 16 15 14 32 32 H 1.09005 * 109.47574 * 172.19669 * 18 17 16 33 33 H 1.08999 * 109.47221 * 292.19706 * 18 17 16 34 34 H 1.09001 * 109.47339 * 52.19671 * 18 17 16 35 35 H 1.08997 * 110.37211 * 322.93388 * 23 14 12 36 36 H 1.09006 * 110.36772 * 85.26022 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 2.1372 -0.8597 -3.5566 8 14 0.6259 1.2798 -2.6542 9 1 -0.8020 0.8745 -2.6994 10 1 0.9773 1.9953 -3.9071 11 1 0.8492 2.1773 -1.4923 12 6 2.0323 -0.7104 1.2304 13 8 1.4172 -1.6545 1.6792 14 7 3.1651 -0.2968 1.8321 15 6 3.9507 0.8882 1.4578 16 6 5.1389 0.9787 2.4385 17 6 4.6480 0.1564 3.6592 18 6 3.7623 1.0061 4.5726 19 6 5.8285 -0.4309 4.4354 20 9 6.6649 -1.1268 3.5561 21 9 6.5480 0.6037 5.0429 22 9 5.3519 -1.3064 5.4170 23 6 3.8251 -0.9611 2.9708 24 1 -0.3634 -1.0220 -0.1069 25 1 -0.3633 0.4186 0.9385 26 1 -0.3633 0.6037 -0.8318 27 1 1.9031 -0.5281 -4.4375 28 1 4.3174 0.7824 0.4368 29 1 3.3343 1.7833 1.5415 30 1 5.3297 2.0137 2.7223 31 1 6.0315 0.5286 2.0041 32 1 3.3205 0.3729 5.3421 33 1 4.3650 1.7829 5.0431 34 1 2.9701 1.4680 3.9833 35 1 3.0813 -1.3630 3.6587 36 1 4.4839 -1.7543 2.6173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874473646.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:29 Heat of formation + Delta-G solvation = -190.728278 kcal Electronic energy + Delta-G solvation = -23164.909459 eV Core-core repulsion = 19234.019206 eV Total energy + Delta-G solvation = -3930.890254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 3.21 seconds Orbital eigenvalues (eV) -50.24957 -47.72837 -47.70619 -39.88991 -37.59890 -33.89764 -32.98024 -31.19866 -29.67683 -27.30591 -26.15073 -25.10910 -23.39571 -22.01323 -20.32805 -18.87145 -18.49008 -18.18232 -17.44797 -16.91978 -16.24492 -15.40775 -15.11638 -14.86236 -14.59741 -14.16560 -14.08325 -14.00271 -13.88180 -13.84937 -13.61940 -13.21089 -12.97773 -12.71120 -12.49877 -12.26767 -12.16996 -11.92900 -11.61403 -11.28688 -11.21856 -11.02208 -10.95525 -10.80442 -10.22880 -9.71610 -9.29729 -8.84286 -8.69933 -8.24854 -6.20386 -4.23206 2.52073 3.19849 3.26607 3.30894 3.34554 3.46344 3.61834 3.69805 3.89058 4.27941 4.42930 4.49039 4.61078 5.01203 5.10322 5.16487 5.30483 5.49446 5.53909 5.57931 5.69599 5.79704 5.83397 5.95497 6.07531 6.26283 6.39606 6.44194 6.64002 6.78016 7.21480 7.48120 7.98278 8.32594 8.79742 8.92588 9.37218 10.91945 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.030297 B = 0.004907 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.976252 B = 5704.662758 C = 5829.034749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.002 3.998 3 H 0.044 0.956 4 C -0.511 4.511 5 H 0.076 0.924 6 C 0.078 3.922 7 N -0.891 5.891 8 Si 0.889 3.111 9 H -0.276 1.276 10 H -0.295 1.295 11 H -0.266 1.266 12 C 0.558 3.442 13 O -0.551 6.551 14 N -0.622 5.622 15 C 0.108 3.892 16 C -0.122 4.122 17 C -0.129 4.129 18 C -0.137 4.137 19 C 0.467 3.533 20 F -0.178 7.178 21 F -0.181 7.181 22 F -0.181 7.181 23 C 0.120 3.880 24 H 0.065 0.935 25 H 0.032 0.968 26 H 0.043 0.957 27 H 0.267 0.733 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.027 7.032 15.234 18.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.020 4.020 3 H 0.062 0.938 4 C -0.549 4.549 5 H 0.095 0.905 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.719 3.281 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.191 1.191 12 C 0.350 3.650 13 O -0.427 6.427 14 N -0.358 5.358 15 C -0.015 4.015 16 C -0.159 4.159 17 C -0.131 4.131 18 C -0.194 4.194 19 C 0.413 3.587 20 F -0.160 7.160 21 F -0.163 7.163 22 F -0.162 7.162 23 C -0.003 4.003 24 H 0.084 0.916 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.628 6.466 15.226 17.820 hybrid contribution -0.191 0.612 -0.128 0.653 sum 6.438 7.077 15.098 17.874 Atomic orbital electron populations 1.21984 0.96716 1.02178 0.98531 1.19322 0.93798 0.96952 0.91879 0.93781 1.20529 1.33106 1.13881 0.87410 0.90544 1.24919 0.95400 0.96749 0.95481 1.69870 1.44884 1.40016 0.98026 0.86824 0.80929 0.83362 0.76998 1.20264 1.22209 1.19120 1.21065 0.77143 0.83361 0.83409 1.90585 1.57034 1.29517 1.65605 1.48457 1.25937 1.28260 1.33149 1.21958 0.91409 0.88706 0.99425 1.22848 0.99348 1.00932 0.92811 1.23054 0.93671 0.99353 0.96992 1.21770 0.99509 0.99404 0.98761 1.20196 0.84279 0.76137 0.78121 1.93188 1.73918 1.80143 1.68713 1.93163 1.80078 1.58646 1.84384 1.93186 1.88112 1.70606 1.64302 1.22028 0.96057 0.92962 0.89290 0.91577 0.94905 0.93833 0.92271 0.89387 0.91101 0.88764 0.89204 0.91123 0.91057 0.89898 0.89363 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.15 37.16 0.30 -2.72 16 2 C 0.00 0.05 1.93 -92.92 -0.18 -0.13 16 3 H 0.04 0.95 6.01 -51.93 -0.31 0.64 16 4 C -0.51 -13.99 9.13 -34.43 -0.31 -14.31 16 5 H 0.08 2.34 7.98 -52.49 -0.42 1.92 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 8 Si 0.89 20.80 24.31 -169.99 -4.13 16.67 16 9 H -0.28 -6.39 6.92 56.52 0.39 -6.00 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.27 -5.77 6.53 56.52 0.37 -5.40 16 12 C 0.56 12.25 6.78 -10.99 -0.07 12.18 16 13 O -0.55 -13.61 16.61 5.55 0.09 -13.52 16 14 N -0.62 -10.84 3.31 -170.51 -0.56 -11.41 16 15 C 0.11 1.50 5.62 -3.06 -0.02 1.49 16 16 C -0.12 -1.29 5.81 -24.89 -0.14 -1.43 16 17 C -0.13 -1.45 0.48 -152.36 -0.07 -1.52 16 18 C -0.14 -1.31 8.38 37.16 0.31 -1.00 16 19 C 0.47 5.30 2.34 37.16 0.09 5.39 16 20 F -0.18 -2.21 15.74 2.25 0.04 -2.17 16 21 F -0.18 -1.96 16.63 2.25 0.04 -1.92 16 22 F -0.18 -2.16 16.90 2.25 0.04 -2.12 16 23 C 0.12 1.77 5.63 -2.53 -0.01 1.76 16 24 H 0.07 1.55 8.04 -51.93 -0.42 1.13 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.04 0.96 3.45 -51.92 -0.18 0.78 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.07 0.89 7.91 -51.93 -0.41 0.48 16 30 H 0.09 0.77 8.05 -51.93 -0.42 0.35 16 31 H 0.09 0.94 7.27 -51.93 -0.38 0.57 16 32 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 33 H 0.07 0.57 7.69 -51.93 -0.40 0.17 16 34 H 0.08 0.83 7.81 -51.93 -0.41 0.43 16 35 H 0.09 1.33 7.90 -51.93 -0.41 0.92 16 36 H 0.07 1.11 7.53 -51.93 -0.39 0.72 16 LS Contribution 300.03 15.07 4.52 4.52 Total: -1.00 -31.16 300.03 -3.99 -35.15 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.58 Total: -1.38 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -0.21 Total: 1.74 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.21 Total: -36.97 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.09 Total: -13.52 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 0.11 Total: -6.22 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.13 Total: 16.67 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.16 -3.99 -35.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874473646.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.575 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.21 seconds