Wall clock time and date at job start Tue Mar 31 2020 01:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47351 * 2 1 4 4 C 1.50708 * 109.47035 * 239.99621 * 2 1 3 5 5 H 1.07994 * 119.99991 * 240.00659 * 4 2 1 6 6 C 1.37882 * 119.99527 * 60.00203 * 4 2 1 7 7 N 1.31519 * 119.99793 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00282 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47107 * 269.99750 * 8 6 4 10 10 H 1.48497 * 109.47333 * 149.99815 * 8 6 4 11 11 H 1.48500 * 109.47250 * 29.99551 * 8 6 4 12 12 C 1.50694 * 109.46874 * 120.00243 * 2 1 3 13 13 O 1.21288 * 120.00471 * 34.38338 * 12 2 1 14 14 N 1.34778 * 119.99911 * 214.38085 * 12 2 1 15 15 C 1.47024 * 125.64761 * 4.88185 * 14 12 2 16 16 C 1.54333 * 107.26654 * 178.84682 * 15 14 12 17 17 C 1.55153 * 103.02059 * 338.13598 * 16 15 14 18 18 C 1.52995 * 111.00709 * 277.23500 * 17 16 15 19 19 C 1.53001 * 111.00558 * 153.38114 * 17 16 15 20 20 F 1.39898 * 109.47124 * 307.80493 * 19 17 16 21 21 F 1.39895 * 109.46985 * 67.80397 * 19 17 16 22 22 F 1.39902 * 109.47169 * 187.80394 * 19 17 16 23 23 C 1.47421 * 125.64919 * 185.18032 * 14 12 2 24 24 H 1.08993 * 109.47594 * 174.03053 * 1 2 3 25 25 H 1.08997 * 109.47133 * 294.03555 * 1 2 3 26 26 H 1.09011 * 109.46615 * 54.02892 * 1 2 3 27 27 H 0.96990 * 119.99800 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.87777 * 298.39150 * 15 14 12 29 29 H 1.09004 * 109.88424 * 59.55136 * 15 14 12 30 30 H 1.08998 * 110.85054 * 219.66837 * 16 15 14 31 31 H 1.09001 * 110.66746 * 96.51688 * 16 15 14 32 32 H 1.09005 * 109.47574 * 172.19669 * 18 17 16 33 33 H 1.08999 * 109.47221 * 292.19706 * 18 17 16 34 34 H 1.09001 * 109.47339 * 52.19671 * 18 17 16 35 35 H 1.08997 * 110.37211 * 322.93388 * 23 14 12 36 36 H 1.09006 * 110.36772 * 85.26022 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 2.1372 -0.8597 -3.5566 8 14 0.6259 1.2798 -2.6542 9 1 -0.8020 0.8745 -2.6994 10 1 0.9773 1.9953 -3.9071 11 1 0.8492 2.1773 -1.4923 12 6 2.0323 -0.7104 1.2304 13 8 1.4172 -1.6545 1.6792 14 7 3.1651 -0.2968 1.8321 15 6 3.9507 0.8882 1.4578 16 6 5.1389 0.9787 2.4385 17 6 4.6480 0.1564 3.6592 18 6 3.7623 1.0061 4.5726 19 6 5.8285 -0.4309 4.4354 20 9 6.6649 -1.1268 3.5561 21 9 6.5480 0.6037 5.0429 22 9 5.3519 -1.3064 5.4170 23 6 3.8251 -0.9611 2.9708 24 1 -0.3634 -1.0220 -0.1069 25 1 -0.3633 0.4186 0.9385 26 1 -0.3633 0.6037 -0.8318 27 1 1.9031 -0.5281 -4.4375 28 1 4.3174 0.7824 0.4368 29 1 3.3343 1.7833 1.5415 30 1 5.3297 2.0137 2.7223 31 1 6.0315 0.5286 2.0041 32 1 3.3205 0.3729 5.3421 33 1 4.3650 1.7829 5.0431 34 1 2.9701 1.4680 3.9833 35 1 3.0813 -1.3630 3.6587 36 1 4.4839 -1.7543 2.6173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874473646.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:26 Heat of formation + Delta-G solvation = -211.309510 kcal Electronic energy + Delta-G solvation = -23165.801929 eV Core-core repulsion = 19234.019206 eV Total energy + Delta-G solvation = -3931.782723 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -51.17433 -48.66365 -48.62241 -41.27803 -39.04637 -35.84954 -34.28072 -33.16787 -30.76165 -28.31577 -27.36844 -27.00626 -24.72735 -23.51821 -21.32475 -20.27334 -19.42054 -19.19078 -18.92948 -18.68977 -17.73104 -16.90797 -16.66882 -15.83373 -15.70847 -15.57764 -15.13294 -15.04798 -14.95640 -14.86652 -14.79206 -14.72619 -14.36964 -14.14378 -13.92849 -13.55193 -13.36928 -13.16724 -13.09631 -12.84625 -12.69409 -12.22450 -12.19080 -12.00940 -11.95181 -11.48794 -11.32883 -10.80341 -10.60915 -9.67525 -8.33925 -6.43348 1.36522 1.38552 1.51065 1.53879 1.72859 2.10313 2.31160 2.62939 2.70660 2.95787 3.00851 3.47361 3.50500 3.71822 3.94718 4.05059 4.17106 4.42861 4.47592 4.52374 4.61321 4.66418 4.72808 4.75942 4.81280 4.87139 4.94187 5.02158 5.17549 5.29647 5.44168 5.49838 6.12375 6.46134 6.61222 7.19008 7.26909 8.82566 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.030297 B = 0.004907 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.976252 B = 5704.662758 C = 5829.034749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.001 3.999 3 H 0.071 0.929 4 C -0.517 4.517 5 H 0.021 0.979 6 C 0.022 3.978 7 N -0.943 5.943 8 Si 0.953 3.047 9 H -0.270 1.270 10 H -0.293 1.293 11 H -0.229 1.229 12 C 0.551 3.449 13 O -0.590 6.590 14 N -0.619 5.619 15 C 0.098 3.902 16 C -0.111 4.111 17 C -0.116 4.116 18 C -0.136 4.136 19 C 0.471 3.529 20 F -0.186 7.186 21 F -0.173 7.173 22 F -0.185 7.185 23 C 0.113 3.887 24 H 0.041 0.959 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.271 0.729 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.132 0.868 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.990 10.236 16.873 20.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.020 4.020 3 H 0.088 0.912 4 C -0.555 4.555 5 H 0.040 0.960 6 C -0.177 4.177 7 N -0.581 5.581 8 Si 0.778 3.222 9 H -0.196 1.196 10 H -0.220 1.220 11 H -0.152 1.152 12 C 0.343 3.657 13 O -0.471 6.471 14 N -0.353 5.353 15 C -0.024 4.024 16 C -0.149 4.149 17 C -0.118 4.118 18 C -0.192 4.192 19 C 0.417 3.583 20 F -0.168 7.168 21 F -0.154 7.154 22 F -0.166 7.166 23 C -0.010 4.010 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.151 0.849 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.640 9.695 16.905 20.588 hybrid contribution -0.067 -0.500 -0.621 0.800 sum 6.574 9.195 16.284 19.822 Atomic orbital electron populations 1.21921 0.95747 1.01158 1.00418 1.19277 0.94658 0.97672 0.90417 0.91153 1.20612 1.32500 1.12546 0.89871 0.96026 1.25854 0.96746 1.00411 0.94665 1.70028 1.46853 1.42403 0.98841 0.85792 0.78699 0.79409 0.78345 1.19591 1.22003 1.15152 1.20865 0.78410 0.83002 0.83469 1.90554 1.58785 1.31045 1.66701 1.48387 1.24720 1.29070 1.33077 1.22253 0.92651 0.87986 0.99538 1.22881 0.97630 1.03053 0.91286 1.22978 0.93338 0.98077 0.97445 1.21817 0.99450 0.99604 0.98374 1.20143 0.84155 0.76094 0.77956 1.93180 1.74183 1.80408 1.69016 1.93182 1.79858 1.58149 1.84193 1.93184 1.88160 1.70835 1.64443 1.22133 0.96064 0.94157 0.88618 0.93971 0.91791 0.93231 0.92038 0.91162 0.88622 0.84942 0.89247 0.91149 0.88621 0.89928 0.89987 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.75 8.15 71.98 0.59 -5.16 16 2 C 0.00 0.05 1.93 -12.28 -0.02 0.03 16 3 H 0.07 2.81 6.01 -2.39 -0.01 2.80 16 4 C -0.52 -29.12 9.13 25.60 0.23 -28.89 16 5 H 0.02 1.40 7.98 -2.91 -0.02 1.38 16 6 C 0.02 1.22 5.45 84.66 0.46 1.68 16 7 N -0.94 -57.43 13.96 21.45 0.30 -57.13 16 8 Si 0.95 41.55 24.31 68.60 1.67 43.22 16 9 H -0.27 -11.50 6.92 99.48 0.69 -10.81 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.23 -8.56 6.53 99.48 0.65 -7.91 16 12 C 0.55 24.28 6.78 87.65 0.59 24.87 16 13 O -0.59 -29.87 16.61 -3.05 -0.05 -29.92 16 14 N -0.62 -21.17 3.31 -811.76 -2.69 -23.86 16 15 C 0.10 2.50 5.62 86.73 0.49 2.99 16 16 C -0.11 -2.00 5.81 31.78 0.18 -1.81 16 17 C -0.12 -2.33 0.48 -50.79 -0.02 -2.36 16 18 C -0.14 -2.12 8.38 71.98 0.60 -1.52 16 19 C 0.47 9.67 2.34 71.98 0.17 9.84 16 20 F -0.19 -4.38 15.74 44.97 0.71 -3.67 16 21 F -0.17 -3.17 16.63 44.97 0.75 -2.42 16 22 F -0.18 -4.12 16.90 44.97 0.76 -3.36 16 23 C 0.11 3.29 5.63 86.86 0.49 3.77 16 24 H 0.04 1.96 8.04 -2.39 -0.02 1.94 16 25 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.05 2.02 3.45 -2.38 -0.01 2.02 16 27 H 0.27 15.30 8.31 -92.72 -0.77 14.53 16 28 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.10 2.01 7.91 -2.38 -0.02 1.99 16 30 H 0.13 1.47 8.05 -2.39 -0.02 1.45 16 31 H 0.09 1.66 7.27 -2.39 -0.02 1.64 16 32 H 0.07 1.13 8.08 -2.38 -0.02 1.11 16 33 H 0.10 1.08 7.69 -2.39 -0.02 1.06 16 34 H 0.08 1.34 7.81 -2.39 -0.02 1.32 16 35 H 0.08 2.48 7.90 -2.39 -0.02 2.46 16 36 H 0.06 1.93 7.53 -2.38 -0.02 1.91 16 Total: -1.00 -70.64 300.03 6.23 -64.41 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 1.02 Total: 9.30 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 3.76 Total: 3.44 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -2.39 Total: -80.99 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.05 Total: -29.92 kcal Atomic # 9 Polarization: -11.68 SS G_CDS: 2.22 Total: -9.46 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 1.67 Total: 43.22 kcal Total: -70.64 6.23 -64.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874473646.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.898 kcal (2) G-P(sol) polarization free energy of solvation -70.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds