Wall clock time and date at job start Tue Mar 31 2020 00:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 110.91439 * 2 1 4 4 F 1.39899 * 109.46919 * 183.90501 * 3 2 1 5 5 F 1.39900 * 109.46893 * 303.89949 * 3 2 1 6 6 F 1.39894 * 109.47214 * 63.90296 * 3 2 1 7 7 C 1.55154 * 111.00236 * 236.09727 * 2 1 3 8 8 C 1.54325 * 102.94303 * 277.42508 * 7 2 1 9 9 N 1.47290 * 107.30599 * 337.81911 * 8 7 2 10 10 C 1.34774 * 125.79121 * 178.92556 * 9 8 7 11 11 O 1.21284 * 119.99787 * 179.97438 * 10 9 8 12 12 C 1.50700 * 120.00339 * 359.97438 * 10 9 8 13 13 C 1.52994 * 109.47372 * 180.02562 * 12 10 9 14 14 C 1.50700 * 109.47372 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99914 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99938 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00632 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99754 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46844 * 60.00573 * 18 16 14 20 20 H 1.48506 * 109.47135 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47418 * 300.00179 * 18 16 14 22 22 C 1.47425 * 108.55742 * 358.92448 * 9 8 7 23 23 H 1.08999 * 109.46806 * 296.09741 * 1 2 3 24 24 H 1.08994 * 109.47294 * 56.09696 * 1 2 3 25 25 H 1.08995 * 109.46897 * 176.10305 * 1 2 3 26 26 H 1.09002 * 110.72290 * 35.79195 * 7 2 1 27 27 H 1.08997 * 110.72022 * 159.05966 * 7 2 1 28 28 H 1.09004 * 109.88239 * 97.22707 * 8 7 2 29 29 H 1.08995 * 109.88239 * 218.23629 * 8 7 2 30 30 H 1.09001 * 109.47139 * 300.00399 * 12 10 9 31 31 H 1.09007 * 109.46778 * 60.00102 * 12 10 9 32 32 H 1.09004 * 109.47534 * 300.00736 * 13 12 10 33 33 H 1.09007 * 109.47102 * 60.00281 * 13 12 10 34 34 H 0.96992 * 120.00488 * 180.02562 * 17 16 14 35 35 H 1.09002 * 110.36696 * 265.26054 * 22 9 8 36 36 H 1.08995 * 110.36608 * 143.04891 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 9 3.4719 1.3950 -0.0898 5 9 1.5555 2.1274 -1.0948 6 9 1.7007 2.0719 1.1845 7 6 2.0862 -0.8079 -1.2022 8 6 2.0286 -2.2647 -0.6960 9 7 2.0137 -2.2167 0.7761 10 6 1.9460 -3.2820 1.5988 11 8 1.9409 -3.1206 2.8008 12 6 1.8765 -4.6739 1.0252 13 6 1.8070 -5.6923 2.1648 14 6 1.7370 -7.0841 1.5912 15 1 1.7419 -7.2279 0.5208 16 6 1.6676 -8.1739 2.4329 17 7 1.6620 -7.9989 3.7364 18 14 1.5814 -9.8991 1.7219 19 1 2.7914 -10.1569 0.9003 20 1 1.5139 -10.8877 2.8281 21 1 0.3701 -10.0245 0.8721 22 6 2.0853 -0.8066 1.2003 23 1 -0.3633 0.4521 0.9229 24 1 -0.3633 0.5732 -0.8529 25 1 -0.3633 -1.0253 -0.0698 26 1 1.4524 -0.6792 -2.0796 27 1 3.1132 -0.5160 -1.4210 28 1 1.1219 -2.7480 -1.0599 29 1 2.9050 -2.8123 -1.0423 30 1 0.9873 -4.7659 0.4015 31 1 2.7646 -4.8630 0.4220 32 1 2.6959 -5.6004 2.7890 33 1 0.9188 -5.5030 2.7676 34 1 1.6136 -8.7656 4.3285 35 1 3.1183 -0.5233 1.4024 36 1 1.4684 -0.6446 2.0842 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874474865.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:57 Heat of formation + Delta-G solvation = -202.769282 kcal Electronic energy + Delta-G solvation = -22392.602298 eV Core-core repulsion = 18461.189907 eV Total energy + Delta-G solvation = -3931.412391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.39612 -47.87940 -47.84768 -40.09736 -37.77142 -33.53755 -33.26662 -30.96502 -29.93888 -27.54134 -26.54858 -25.06318 -23.31606 -21.43863 -20.47926 -19.10434 -18.64330 -18.36056 -17.69388 -16.85263 -15.95625 -15.63911 -15.14074 -14.89810 -14.70028 -14.42368 -14.33745 -14.25084 -14.02539 -14.00626 -13.90643 -13.60981 -12.95180 -12.68829 -12.59011 -12.37378 -12.16880 -11.93842 -11.49079 -11.40215 -11.27326 -11.14736 -10.92733 -10.63583 -9.98439 -9.70270 -9.25627 -9.08656 -8.56429 -8.33598 -5.97717 -4.02600 2.35015 3.09084 3.11715 3.33198 3.38157 3.39598 3.43337 3.49427 3.71097 4.23572 4.28666 4.43452 4.45797 4.76611 4.89705 5.12106 5.30310 5.36038 5.37153 5.39818 5.47092 5.51157 5.61883 5.68734 5.79711 6.14832 6.18106 6.35238 6.82858 7.69870 7.71508 7.82600 8.04478 8.35058 8.63390 9.05335 9.61092 11.13195 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.043368 B = 0.003428 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.489271 B = 8165.606765 C = 8401.938898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.467 3.533 4 F -0.180 7.180 5 F -0.180 7.180 6 F -0.179 7.179 7 C -0.122 4.122 8 C 0.107 3.893 9 N -0.629 5.629 10 C 0.528 3.472 11 O -0.528 6.528 12 C -0.123 4.123 13 C 0.036 3.964 14 C -0.528 4.528 15 H 0.055 0.945 16 C 0.059 3.941 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.119 3.881 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.262 0.738 35 H 0.074 0.926 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.514 19.398 -12.573 23.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.130 4.130 3 C 0.413 3.587 4 F -0.161 7.161 5 F -0.162 7.162 6 F -0.160 7.160 7 C -0.159 4.159 8 C -0.016 4.016 9 N -0.367 5.367 10 C 0.320 3.680 11 O -0.402 6.402 12 C -0.163 4.163 13 C -0.001 4.001 14 C -0.567 4.567 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.004 4.004 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.102 0.898 26 H 0.115 0.885 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.515 19.308 -11.658 22.561 hybrid contribution 0.117 -0.587 -0.420 0.731 sum -0.398 18.722 -12.078 22.283 Atomic orbital electron populations 1.21794 0.89677 1.04627 1.03544 1.23057 0.99751 0.89460 1.00723 1.20172 0.75755 0.89210 0.73584 1.93180 1.30247 1.96788 1.95884 1.93174 1.86563 1.81545 1.54876 1.93197 1.91121 1.84020 1.47699 1.22831 1.02843 0.94022 0.96239 1.21994 1.02998 0.95980 0.80652 1.48723 1.76182 1.05139 1.06608 1.21406 0.74269 0.86137 0.86217 1.90696 1.48657 1.85937 1.14900 1.21865 1.02452 0.89510 1.02432 1.18921 0.98648 0.90860 0.91693 1.21159 1.51495 0.91178 0.92839 0.92639 1.25018 0.95254 0.99219 0.94806 1.69982 1.49902 1.30696 1.02212 0.86648 0.78559 0.84127 0.78566 1.20232 1.21268 1.20242 1.22046 1.01351 0.81787 0.95256 0.90951 0.90936 0.89774 0.88511 0.89219 0.90565 0.90394 0.90178 0.90159 0.95783 0.95790 0.92849 0.90809 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.38 37.16 0.31 -0.83 16 2 C -0.13 -1.17 0.48 -152.36 -0.07 -1.25 16 3 C 0.47 4.49 2.34 37.16 0.09 4.58 16 4 F -0.18 -1.85 15.74 2.25 0.04 -1.81 16 5 F -0.18 -1.68 16.63 2.25 0.04 -1.64 16 6 F -0.18 -1.90 16.90 2.25 0.04 -1.86 16 7 C -0.12 -0.93 5.81 -24.90 -0.14 -1.08 16 8 C 0.11 1.05 6.11 -2.92 -0.02 1.04 16 9 N -0.63 -8.87 3.32 -170.31 -0.57 -9.44 16 10 C 0.53 10.13 7.85 -10.99 -0.09 10.04 16 11 O -0.53 -12.45 16.24 5.55 0.09 -12.36 16 12 C -0.12 -2.45 4.84 -27.89 -0.14 -2.58 16 13 C 0.04 0.97 4.26 -27.89 -0.12 0.85 16 14 C -0.53 -14.81 9.11 -34.44 -0.31 -15.12 16 15 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 18 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.12 1.47 5.59 -2.53 -0.01 1.45 16 23 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 24 H 0.07 0.49 7.69 -51.93 -0.40 0.09 16 25 H 0.08 0.73 7.80 -51.93 -0.40 0.32 16 26 H 0.10 0.55 8.05 -51.93 -0.42 0.13 16 27 H 0.09 0.66 7.27 -51.93 -0.38 0.28 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.07 0.91 7.53 -51.93 -0.39 0.52 16 36 H 0.09 1.22 7.95 -51.93 -0.41 0.80 16 LS Contribution 312.40 15.07 4.71 4.71 Total: -1.00 -33.20 312.40 -5.44 -38.64 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: -4.90 Total: -4.84 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -0.60 Total: -1.30 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.17 Total: -35.96 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.11 Total: -5.32 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.20 -5.44 -38.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874474865.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.127 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds