Wall clock time and date at job start Tue Mar 31 2020 00:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 110.91439 * 2 1 4 4 F 1.39899 * 109.46919 * 183.90501 * 3 2 1 5 5 F 1.39900 * 109.46893 * 303.89949 * 3 2 1 6 6 F 1.39894 * 109.47214 * 63.90296 * 3 2 1 7 7 C 1.55154 * 111.00236 * 236.09727 * 2 1 3 8 8 C 1.54325 * 102.94303 * 277.42508 * 7 2 1 9 9 N 1.47290 * 107.30599 * 337.81911 * 8 7 2 10 10 C 1.34774 * 125.79121 * 178.92556 * 9 8 7 11 11 O 1.21284 * 119.99787 * 179.97438 * 10 9 8 12 12 C 1.50700 * 120.00339 * 359.97438 * 10 9 8 13 13 C 1.52994 * 109.47372 * 180.02562 * 12 10 9 14 14 C 1.50700 * 109.47372 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99914 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99938 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00632 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99754 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46844 * 60.00573 * 18 16 14 20 20 H 1.48506 * 109.47135 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47418 * 300.00179 * 18 16 14 22 22 C 1.47425 * 108.55742 * 358.92448 * 9 8 7 23 23 H 1.08999 * 109.46806 * 296.09741 * 1 2 3 24 24 H 1.08994 * 109.47294 * 56.09696 * 1 2 3 25 25 H 1.08995 * 109.46897 * 176.10305 * 1 2 3 26 26 H 1.09002 * 110.72290 * 35.79195 * 7 2 1 27 27 H 1.08997 * 110.72022 * 159.05966 * 7 2 1 28 28 H 1.09004 * 109.88239 * 97.22707 * 8 7 2 29 29 H 1.08995 * 109.88239 * 218.23629 * 8 7 2 30 30 H 1.09001 * 109.47139 * 300.00399 * 12 10 9 31 31 H 1.09007 * 109.46778 * 60.00102 * 12 10 9 32 32 H 1.09004 * 109.47534 * 300.00736 * 13 12 10 33 33 H 1.09007 * 109.47102 * 60.00281 * 13 12 10 34 34 H 0.96992 * 120.00488 * 180.02562 * 17 16 14 35 35 H 1.09002 * 110.36696 * 265.26054 * 22 9 8 36 36 H 1.08995 * 110.36608 * 143.04891 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 9 3.4719 1.3950 -0.0898 5 9 1.5555 2.1274 -1.0948 6 9 1.7007 2.0719 1.1845 7 6 2.0862 -0.8079 -1.2022 8 6 2.0286 -2.2647 -0.6960 9 7 2.0137 -2.2167 0.7761 10 6 1.9460 -3.2820 1.5988 11 8 1.9409 -3.1206 2.8008 12 6 1.8765 -4.6739 1.0252 13 6 1.8070 -5.6923 2.1648 14 6 1.7370 -7.0841 1.5912 15 1 1.7419 -7.2279 0.5208 16 6 1.6676 -8.1739 2.4329 17 7 1.6620 -7.9989 3.7364 18 14 1.5814 -9.8991 1.7219 19 1 2.7914 -10.1569 0.9003 20 1 1.5139 -10.8877 2.8281 21 1 0.3701 -10.0245 0.8721 22 6 2.0853 -0.8066 1.2003 23 1 -0.3633 0.4521 0.9229 24 1 -0.3633 0.5732 -0.8529 25 1 -0.3633 -1.0253 -0.0698 26 1 1.4524 -0.6792 -2.0796 27 1 3.1132 -0.5160 -1.4210 28 1 1.1219 -2.7480 -1.0599 29 1 2.9050 -2.8123 -1.0423 30 1 0.9873 -4.7659 0.4015 31 1 2.7646 -4.8630 0.4220 32 1 2.6959 -5.6004 2.7890 33 1 0.9188 -5.5030 2.7676 34 1 1.6136 -8.7656 4.3285 35 1 3.1183 -0.5233 1.4024 36 1 1.4684 -0.6446 2.0842 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874474865.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:56 Heat of formation + Delta-G solvation = -223.936135 kcal Electronic energy + Delta-G solvation = -22393.520162 eV Core-core repulsion = 18461.189907 eV Total energy + Delta-G solvation = -3932.330254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.18014 -48.66803 -48.63274 -41.27284 -39.06113 -35.57935 -34.41862 -32.88049 -30.77387 -28.71651 -27.69293 -26.54168 -24.37841 -23.16501 -21.32940 -20.33787 -19.42803 -19.19961 -18.97956 -18.32432 -17.53771 -16.89861 -16.47069 -16.29416 -15.79525 -15.68721 -15.32060 -15.08499 -14.92675 -14.81268 -14.77462 -14.55011 -14.20690 -14.12961 -13.94069 -13.54477 -13.24381 -13.11885 -13.05385 -12.76353 -12.51664 -12.25158 -12.11242 -12.01244 -11.85995 -11.62664 -11.31933 -10.81818 -10.54954 -9.74472 -8.16837 -6.31257 1.43407 1.48068 1.49731 1.55843 1.63603 1.99616 2.44308 2.62469 2.69523 2.94130 3.16327 3.45415 3.48523 3.70368 3.90483 4.04340 4.17829 4.43751 4.44510 4.51331 4.58394 4.62933 4.71986 4.76208 4.86535 5.00904 5.04167 5.14993 5.27293 5.50490 5.62325 5.85334 6.17441 6.39900 6.86979 7.17565 7.39311 8.95738 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.043368 B = 0.003428 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.489271 B = 8165.606765 C = 8401.938898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.118 4.118 3 C 0.470 3.530 4 F -0.183 7.183 5 F -0.174 7.174 6 F -0.188 7.188 7 C -0.111 4.111 8 C 0.095 3.905 9 N -0.619 5.619 10 C 0.527 3.473 11 O -0.589 6.589 12 C -0.109 4.109 13 C 0.041 3.959 14 C -0.543 4.543 15 H 0.078 0.922 16 C -0.006 4.006 17 N -0.939 5.939 18 Si 0.974 3.026 19 H -0.262 1.262 20 H -0.289 1.289 21 H -0.261 1.261 22 C 0.113 3.887 23 H 0.064 0.936 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.129 0.871 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.104 0.896 32 H -0.020 1.020 33 H -0.018 1.018 34 H 0.263 0.737 35 H 0.072 0.928 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.748 19.445 -16.201 25.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 C 0.416 3.584 4 F -0.165 7.165 5 F -0.155 7.155 6 F -0.169 7.169 7 C -0.149 4.149 8 C -0.026 4.026 9 N -0.353 5.353 10 C 0.318 3.682 11 O -0.468 6.468 12 C -0.148 4.148 13 C 0.004 3.996 14 C -0.580 4.580 15 H 0.096 0.904 16 C -0.204 4.204 17 N -0.579 5.579 18 Si 0.798 3.202 19 H -0.187 1.187 20 H -0.215 1.215 21 H -0.186 1.186 22 C -0.011 4.011 23 H 0.083 0.917 24 H 0.113 0.887 25 H 0.100 0.900 26 H 0.147 0.853 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.125 0.875 31 H 0.122 0.878 32 H -0.001 1.001 33 H 0.000 1.000 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.746 19.401 -15.369 24.763 hybrid contribution 0.205 -0.496 0.705 0.886 sum -0.541 18.905 -14.665 23.932 Atomic orbital electron populations 1.21823 0.88723 1.04803 1.04214 1.22984 1.00367 0.88885 0.99789 1.20166 0.75551 0.89264 0.73436 1.93177 1.30618 1.96805 1.95881 1.93187 1.86447 1.81420 1.54460 1.93187 1.91176 1.84221 1.48321 1.22906 1.04035 0.91685 0.96249 1.22413 1.04638 0.98125 0.77441 1.48536 1.73624 1.04748 1.08441 1.21146 0.74235 0.87105 0.85690 1.90673 1.51873 1.86809 1.17465 1.21593 1.04793 0.88359 1.00090 1.18708 0.94656 0.93238 0.93047 1.21670 1.50694 0.91686 0.93994 0.90383 1.26140 0.94629 1.04598 0.95024 1.70173 1.51352 1.32176 1.04168 0.85372 0.79524 0.77550 0.77782 1.18651 1.21515 1.18560 1.22129 1.01281 0.81267 0.96395 0.91713 0.88724 0.90018 0.85277 0.88435 0.88686 0.89038 0.87515 0.87765 1.00111 0.99955 0.92879 0.90961 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.38 71.98 0.60 -1.34 16 2 C -0.12 -1.90 0.48 -50.79 -0.02 -1.93 16 3 C 0.47 8.10 2.34 71.98 0.17 8.27 16 4 F -0.18 -3.43 15.74 44.97 0.71 -2.72 16 5 F -0.17 -2.74 16.63 44.97 0.75 -1.99 16 6 F -0.19 -3.81 16.90 44.97 0.76 -3.05 16 7 C -0.11 -1.27 5.81 31.78 0.18 -1.09 16 8 C 0.10 1.55 6.11 86.68 0.53 2.08 16 9 N -0.62 -16.81 3.32 -811.11 -2.69 -19.50 16 10 C 0.53 20.51 7.85 87.66 0.69 21.20 16 11 O -0.59 -29.44 16.24 -3.04 -0.05 -29.49 16 12 C -0.11 -4.28 4.84 29.85 0.14 -4.14 16 13 C 0.04 2.28 4.26 29.85 0.13 2.41 16 14 C -0.54 -30.48 9.11 25.60 0.23 -30.24 16 15 H 0.08 3.94 7.74 -2.91 -0.02 3.91 16 16 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 17 N -0.94 -59.48 13.29 21.45 0.28 -59.20 16 18 Si 0.97 43.72 29.54 68.60 2.03 45.75 16 19 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 20 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 22 C 0.11 2.73 5.59 86.85 0.49 3.21 16 23 H 0.06 1.02 8.08 -2.39 -0.02 1.00 16 24 H 0.09 0.94 7.69 -2.39 -0.02 0.92 16 25 H 0.08 1.22 7.80 -2.39 -0.02 1.20 16 26 H 0.13 0.75 8.05 -2.39 -0.02 0.73 16 27 H 0.10 1.03 7.27 -2.39 -0.02 1.02 16 28 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 31 H 0.10 3.59 8.14 -2.38 -0.02 3.57 16 32 H -0.02 -1.23 8.10 -2.38 -0.02 -1.25 16 33 H -0.02 -1.13 8.10 -2.38 -0.02 -1.15 16 34 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 35 H 0.07 1.78 7.53 -2.39 -0.02 1.76 16 36 H 0.07 2.02 7.95 -2.39 -0.02 2.00 16 Total: -1.00 -76.35 312.40 6.47 -69.88 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: 1.08 Total: 1.81 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 3.60 Total: -1.49 kcal Atomic # 7 Polarization: -76.29 SS G_CDS: -2.41 Total: -78.70 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.05 Total: -29.49 kcal Atomic # 9 Polarization: -9.98 SS G_CDS: 2.22 Total: -7.77 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -76.35 6.47 -69.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874474865.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.053 kcal (2) G-P(sol) polarization free energy of solvation -76.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds