Wall clock time and date at job start Tue Mar 31 2020 00:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 110.77431 * 2 1 4 4 F 1.39903 * 109.47253 * 296.76070 * 3 2 1 5 5 F 1.39903 * 109.47250 * 56.75788 * 3 2 1 6 6 F 1.39896 * 109.46959 * 176.75759 * 3 2 1 7 7 C 1.55156 * 110.72177 * 123.23476 * 2 1 3 8 8 C 1.55129 * 101.48393 * 82.69807 * 7 2 1 9 9 N 1.47421 * 104.71980 * 37.29957 * 8 7 2 10 10 C 1.34782 * 125.64846 * 155.81828 * 9 8 7 11 11 O 1.21278 * 120.00031 * 179.68588 * 10 9 8 12 12 C 1.50696 * 119.99786 * 359.68685 * 10 9 8 13 13 C 1.53000 * 109.47264 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47457 * 179.97438 * 13 12 10 15 15 H 1.08003 * 120.00087 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99956 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00308 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99908 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46845 * 60.00735 * 18 16 14 20 20 H 1.48503 * 109.47399 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47295 * 300.00832 * 18 16 14 22 22 C 1.47020 * 108.70573 * 335.54609 * 9 8 7 23 23 H 1.09007 * 109.46339 * 183.23750 * 1 2 3 24 24 H 1.08991 * 109.47552 * 303.23537 * 1 2 3 25 25 H 1.08997 * 109.47053 * 63.24817 * 1 2 3 26 26 H 1.08999 * 111.00357 * 200.94206 * 7 2 1 27 27 H 1.09007 * 111.00423 * 324.75267 * 7 2 1 28 28 H 1.08998 * 110.49688 * 278.45286 * 8 7 2 29 29 H 1.08997 * 110.33718 * 156.05965 * 8 7 2 30 30 H 1.09001 * 109.47328 * 59.99969 * 12 10 9 31 31 H 1.09000 * 109.46978 * 300.00080 * 12 10 9 32 32 H 1.09001 * 109.47194 * 59.99617 * 13 12 10 33 33 H 1.09004 * 109.46724 * 300.00276 * 13 12 10 34 34 H 0.97000 * 119.99806 * 0.02562 * 17 16 14 35 35 H 1.08999 * 109.88243 * 120.70297 * 22 9 8 36 36 H 1.08993 * 109.88649 * 241.72114 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0727 1.4306 0.0000 4 9 1.6829 2.0773 -1.1777 5 9 1.5621 2.1231 1.1032 6 9 3.4694 1.3995 0.0746 7 6 2.0791 -0.7954 1.2138 8 6 2.0076 -2.2524 0.6862 9 7 2.3718 -2.1530 -0.7389 10 6 2.8853 -3.1477 -1.4896 11 8 3.1433 -2.9538 -2.6587 12 6 3.1387 -4.5007 -0.8764 13 6 3.7195 -5.4399 -1.9353 14 6 3.9735 -6.7928 -1.3219 15 1 3.7433 -6.9656 -0.2810 16 6 4.4988 -7.8102 -2.0899 17 7 4.7787 -7.6000 -3.3576 18 14 4.8130 -9.4874 -1.3298 19 1 3.5356 -10.0465 -0.8190 20 1 5.3769 -10.3990 -2.3575 21 1 5.7767 -9.3500 -0.2083 22 6 2.0761 -0.7912 -1.2072 23 1 -0.3632 -1.0261 0.0580 24 1 -0.3634 0.5632 0.8595 25 1 -0.3633 0.4626 -0.9176 26 1 3.1062 -0.5071 1.4375 27 1 1.4400 -0.6656 2.0873 28 1 0.9975 -2.6479 0.7930 29 1 2.7209 -2.8829 1.2170 30 1 2.2011 -4.9110 -0.5012 31 1 3.8462 -4.3998 -0.0534 32 1 4.6571 -5.0295 -2.3101 33 1 3.0123 -5.5408 -2.7586 34 1 4.6159 -6.7290 -3.7522 35 1 2.9869 -0.3205 -1.5774 36 1 1.3284 -0.8257 -1.9995 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874474866.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:59 Heat of formation + Delta-G solvation = -206.854876 kcal Electronic energy + Delta-G solvation = -22440.194000 eV Core-core repulsion = 18508.604444 eV Total energy + Delta-G solvation = -3931.589556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.42537 -47.89969 -47.87496 -40.17907 -37.89173 -33.83934 -33.44639 -30.86979 -29.93150 -27.50294 -26.49351 -24.71956 -23.40455 -21.72713 -20.54209 -19.20795 -18.66336 -18.38729 -17.78994 -16.95458 -16.22797 -15.86750 -15.31555 -14.86976 -14.81765 -14.33177 -14.27187 -14.09210 -14.04757 -13.93248 -13.70566 -13.65957 -13.13021 -12.87369 -12.77548 -12.50564 -12.12360 -12.01604 -11.62798 -11.49820 -11.37906 -11.32918 -10.83851 -10.15478 -10.14432 -9.94740 -9.40471 -8.64374 -8.55914 -8.30087 -6.33328 -4.03880 2.31555 3.02360 3.03105 3.39722 3.43858 3.44978 3.46680 3.63286 3.65636 4.15989 4.23289 4.37983 4.56233 4.70755 4.87843 5.02935 5.23376 5.25213 5.31869 5.38914 5.41175 5.44476 5.53759 5.60642 5.71996 6.01769 6.05788 6.27396 6.67989 7.48602 7.53625 7.60540 8.16437 8.46727 8.53722 8.89990 9.69978 11.07604 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.041068 B = 0.003474 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.633187 B = 8058.730636 C = 8275.581461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.466 3.534 4 F -0.180 7.180 5 F -0.180 7.180 6 F -0.178 7.178 7 C -0.124 4.124 8 C 0.105 3.895 9 N -0.628 5.628 10 C 0.527 3.473 11 O -0.531 6.531 12 C -0.116 4.116 13 C 0.023 3.977 14 C -0.609 4.609 15 H 0.049 0.951 16 C 0.016 3.984 17 N -0.910 5.910 18 Si 1.070 2.930 19 H -0.288 1.288 20 H -0.282 1.282 21 H -0.288 1.288 22 C 0.120 3.880 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.015 0.985 33 H 0.015 0.985 34 H 0.272 0.728 35 H 0.074 0.926 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.570 18.451 12.134 24.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 C 0.411 3.589 4 F -0.161 7.161 5 F -0.161 7.161 6 F -0.159 7.159 7 C -0.162 4.162 8 C -0.018 4.018 9 N -0.366 5.366 10 C 0.319 3.681 11 O -0.405 6.405 12 C -0.156 4.156 13 C -0.014 4.014 14 C -0.647 4.647 15 H 0.068 0.932 16 C -0.189 4.189 17 N -0.546 5.546 18 Si 0.898 3.102 19 H -0.215 1.215 20 H -0.208 1.208 21 H -0.215 1.215 22 C -0.003 4.003 23 H 0.102 0.898 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.033 0.967 33 H 0.033 0.967 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.801 16.976 11.080 22.100 hybrid contribution -0.514 2.020 0.442 2.131 sum -9.315 18.996 11.522 24.091 Atomic orbital electron populations 1.21874 0.89674 1.04555 1.03736 1.22913 0.99646 0.89700 1.00418 1.20212 0.75880 0.89221 0.73583 1.93196 1.90741 1.83874 1.48284 1.93174 1.86933 1.81792 1.54220 1.93196 1.30006 1.96778 1.95945 1.23035 1.03045 0.94360 0.95749 1.22332 1.01606 0.96166 0.81674 1.48657 1.65812 1.10783 1.11359 1.21397 0.74967 0.85695 0.86085 1.90684 1.50652 1.82535 1.16660 1.21719 1.02335 0.89898 1.01604 1.19042 0.95932 0.93226 0.93222 1.22005 1.47527 0.96861 0.98352 0.93243 1.25851 0.93886 1.03853 0.95294 1.70736 1.44890 1.26555 1.12373 0.83535 0.76388 0.75084 0.75152 1.21463 1.20754 1.21462 1.21756 1.01051 0.83483 0.94011 0.89806 0.90769 0.90860 0.89090 0.88296 0.90687 0.89244 0.89978 0.89976 0.96685 0.96689 0.91726 0.90778 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.21 37.16 0.31 -0.67 16 2 C -0.12 -1.12 0.45 -152.67 -0.07 -1.19 16 3 C 0.47 4.57 2.24 37.16 0.08 4.66 16 4 F -0.18 -1.91 16.85 2.25 0.04 -1.87 16 5 F -0.18 -1.67 16.62 2.25 0.04 -1.64 16 6 F -0.18 -2.00 15.78 2.25 0.04 -1.97 16 7 C -0.12 -0.97 5.90 -24.46 -0.14 -1.11 16 8 C 0.11 1.03 6.38 -2.41 -0.02 1.02 16 9 N -0.63 -8.97 3.32 -170.39 -0.57 -9.53 16 10 C 0.53 10.22 7.85 -10.99 -0.09 10.14 16 11 O -0.53 -12.57 16.31 5.56 0.09 -12.48 16 12 C -0.12 -2.34 4.64 -27.88 -0.13 -2.47 16 13 C 0.02 0.62 3.57 -27.88 -0.10 0.52 16 14 C -0.61 -17.38 9.11 -34.44 -0.31 -17.70 16 15 H 0.05 1.34 7.74 -52.48 -0.41 0.93 16 16 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 17 N -0.91 -28.72 13.65 55.43 0.76 -27.96 16 18 Si 1.07 25.25 29.90 -169.99 -5.08 20.17 16 19 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 22 C 0.12 1.49 5.76 -3.07 -0.02 1.48 16 23 H 0.08 0.55 7.39 -51.93 -0.38 0.17 16 24 H 0.07 0.42 7.72 -51.93 -0.40 0.02 16 25 H 0.07 0.51 8.05 -51.93 -0.42 0.09 16 26 H 0.09 0.76 7.32 -51.93 -0.38 0.38 16 27 H 0.10 0.53 8.04 -51.93 -0.42 0.11 16 28 H 0.07 0.62 7.67 -51.93 -0.40 0.22 16 29 H 0.09 0.85 7.48 -51.93 -0.39 0.46 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 31 H 0.08 1.53 7.85 -51.93 -0.41 1.12 16 32 H 0.01 0.43 7.97 -51.93 -0.41 0.02 16 33 H 0.01 0.43 7.97 -51.93 -0.41 0.02 16 34 H 0.27 8.73 7.22 -40.82 -0.29 8.43 16 35 H 0.07 1.02 7.36 -51.93 -0.38 0.64 16 36 H 0.08 1.01 7.85 -51.93 -0.41 0.61 16 LS Contribution 309.09 15.07 4.66 4.66 Total: -1.00 -34.29 309.09 -5.35 -39.64 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -4.73 Total: -4.05 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -0.58 Total: -4.97 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.19 Total: -37.49 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.11 Total: -5.48 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.08 Total: 20.17 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.29 -5.35 -39.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874474866.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.213 kcal (2) G-P(sol) polarization free energy of solvation -34.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds