Wall clock time and date at job start Tue Mar 31 2020 00:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 110.77431 * 2 1 4 4 F 1.39903 * 109.47253 * 296.76070 * 3 2 1 5 5 F 1.39903 * 109.47250 * 56.75788 * 3 2 1 6 6 F 1.39896 * 109.46959 * 176.75759 * 3 2 1 7 7 C 1.55156 * 110.72177 * 123.23476 * 2 1 3 8 8 C 1.55129 * 101.48393 * 82.69807 * 7 2 1 9 9 N 1.47421 * 104.71980 * 37.29957 * 8 7 2 10 10 C 1.34782 * 125.64846 * 155.81828 * 9 8 7 11 11 O 1.21278 * 120.00031 * 179.68588 * 10 9 8 12 12 C 1.50696 * 119.99786 * 359.68685 * 10 9 8 13 13 C 1.53000 * 109.47264 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47457 * 179.97438 * 13 12 10 15 15 H 1.08003 * 120.00087 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99956 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00308 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99908 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46845 * 60.00735 * 18 16 14 20 20 H 1.48503 * 109.47399 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47295 * 300.00832 * 18 16 14 22 22 C 1.47020 * 108.70573 * 335.54609 * 9 8 7 23 23 H 1.09007 * 109.46339 * 183.23750 * 1 2 3 24 24 H 1.08991 * 109.47552 * 303.23537 * 1 2 3 25 25 H 1.08997 * 109.47053 * 63.24817 * 1 2 3 26 26 H 1.08999 * 111.00357 * 200.94206 * 7 2 1 27 27 H 1.09007 * 111.00423 * 324.75267 * 7 2 1 28 28 H 1.08998 * 110.49688 * 278.45286 * 8 7 2 29 29 H 1.08997 * 110.33718 * 156.05965 * 8 7 2 30 30 H 1.09001 * 109.47328 * 59.99969 * 12 10 9 31 31 H 1.09000 * 109.46978 * 300.00080 * 12 10 9 32 32 H 1.09001 * 109.47194 * 59.99617 * 13 12 10 33 33 H 1.09004 * 109.46724 * 300.00276 * 13 12 10 34 34 H 0.97000 * 119.99806 * 0.02562 * 17 16 14 35 35 H 1.08999 * 109.88243 * 120.70297 * 22 9 8 36 36 H 1.08993 * 109.88649 * 241.72114 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0727 1.4306 0.0000 4 9 1.6829 2.0773 -1.1777 5 9 1.5621 2.1231 1.1032 6 9 3.4694 1.3995 0.0746 7 6 2.0791 -0.7954 1.2138 8 6 2.0076 -2.2524 0.6862 9 7 2.3718 -2.1530 -0.7389 10 6 2.8853 -3.1477 -1.4896 11 8 3.1433 -2.9538 -2.6587 12 6 3.1387 -4.5007 -0.8764 13 6 3.7195 -5.4399 -1.9353 14 6 3.9735 -6.7928 -1.3219 15 1 3.7433 -6.9656 -0.2810 16 6 4.4988 -7.8102 -2.0899 17 7 4.7787 -7.6000 -3.3576 18 14 4.8130 -9.4874 -1.3298 19 1 3.5356 -10.0465 -0.8190 20 1 5.3769 -10.3990 -2.3575 21 1 5.7767 -9.3500 -0.2083 22 6 2.0761 -0.7912 -1.2072 23 1 -0.3632 -1.0261 0.0580 24 1 -0.3634 0.5632 0.8595 25 1 -0.3633 0.4626 -0.9176 26 1 3.1062 -0.5071 1.4375 27 1 1.4400 -0.6656 2.0873 28 1 0.9975 -2.6479 0.7930 29 1 2.7209 -2.8829 1.2170 30 1 2.2011 -4.9110 -0.5012 31 1 3.8462 -4.3998 -0.0534 32 1 4.6571 -5.0295 -2.3101 33 1 3.0123 -5.5408 -2.7586 34 1 4.6159 -6.7290 -3.7522 35 1 2.9869 -0.3205 -1.5774 36 1 1.3284 -0.8257 -1.9995 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874474866.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:58 Heat of formation + Delta-G solvation = -229.142270 kcal Electronic energy + Delta-G solvation = -22441.160454 eV Core-core repulsion = 18508.604444 eV Total energy + Delta-G solvation = -3932.556009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.22885 -48.71970 -48.67270 -41.36480 -39.17649 -35.96493 -34.55517 -32.77929 -30.77472 -28.52399 -27.60299 -26.36959 -24.49707 -23.52618 -21.37079 -20.44974 -19.46913 -19.26425 -19.13747 -18.55996 -17.57825 -17.12440 -16.66178 -15.89967 -15.73421 -15.59599 -15.44042 -15.14137 -15.04142 -14.86373 -14.83309 -14.60310 -14.40460 -14.25757 -13.81011 -13.60061 -13.51765 -13.28668 -13.08213 -12.65672 -12.32893 -12.17727 -12.10702 -12.03458 -11.94782 -11.83817 -11.06052 -10.69422 -10.54763 -9.84130 -8.68991 -6.41229 1.45209 1.52568 1.55858 1.65731 1.83952 1.91618 2.59194 2.61178 2.65240 2.87900 3.17701 3.39581 3.42932 3.65861 3.80005 3.98963 4.13174 4.27126 4.32789 4.43822 4.50432 4.57847 4.69093 4.73086 4.81967 4.88080 4.94920 5.17334 5.17744 5.30018 5.35110 5.92757 6.16081 6.31796 6.50929 7.06074 7.45337 8.70877 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.041068 B = 0.003474 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.633187 B = 8058.730636 C = 8275.581461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C 0.465 3.535 4 F -0.187 7.187 5 F -0.172 7.172 6 F -0.189 7.189 7 C -0.115 4.115 8 C 0.094 3.906 9 N -0.619 5.619 10 C 0.525 3.475 11 O -0.591 6.591 12 C -0.103 4.103 13 C 0.025 3.975 14 C -0.617 4.617 15 H 0.070 0.930 16 C -0.046 4.046 17 N -0.941 5.941 18 Si 1.125 2.875 19 H -0.262 1.262 20 H -0.289 1.289 21 H -0.263 1.263 22 C 0.114 3.886 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.137 0.863 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.104 0.896 32 H -0.023 1.023 33 H -0.021 1.021 34 H 0.251 0.749 35 H 0.054 0.946 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.037 18.399 15.690 26.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 C 0.411 3.589 4 F -0.168 7.168 5 F -0.154 7.154 6 F -0.170 7.170 7 C -0.153 4.153 8 C -0.027 4.027 9 N -0.353 5.353 10 C 0.316 3.684 11 O -0.471 6.471 12 C -0.142 4.142 13 C -0.012 4.012 14 C -0.655 4.655 15 H 0.088 0.912 16 C -0.242 4.242 17 N -0.578 5.578 18 Si 0.945 3.055 19 H -0.187 1.187 20 H -0.215 1.215 21 H -0.188 1.188 22 C -0.009 4.009 23 H 0.111 0.889 24 H 0.113 0.887 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.155 0.845 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.126 0.874 31 H 0.123 0.877 32 H -0.005 1.005 33 H -0.003 1.003 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.307 16.984 14.713 24.722 hybrid contribution -0.083 2.153 -0.646 2.249 sum -10.390 19.137 14.067 25.924 Atomic orbital electron populations 1.21928 0.87596 1.05492 1.04609 1.22883 1.01027 0.88520 0.99091 1.20341 0.75390 0.89683 0.73513 1.93186 1.90734 1.84092 1.48815 1.93188 1.86740 1.81692 1.53742 1.93179 1.31040 1.96845 1.95984 1.23107 1.03709 0.92272 0.96202 1.22783 1.03310 0.98039 0.78587 1.48507 1.63422 1.10317 1.13098 1.21127 0.75241 0.86512 0.85519 1.90660 1.53639 1.83566 1.19193 1.21470 1.03602 0.89356 0.99783 1.18887 0.93671 0.94589 0.94079 1.22481 1.46400 0.97327 0.99294 0.91175 1.27684 0.93087 1.08559 0.94882 1.70900 1.47373 1.25425 1.14097 0.82868 0.77902 0.69950 0.74816 1.18684 1.21528 1.18823 1.21856 1.00337 0.82812 0.95894 0.88940 0.88684 0.91168 0.89546 0.84515 0.87953 0.88337 0.87443 0.87742 1.00485 1.00269 0.94015 0.92748 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.21 71.98 0.59 -0.87 16 2 C -0.11 -1.75 0.45 -50.99 -0.02 -1.78 16 3 C 0.47 8.34 2.24 71.98 0.16 8.50 16 4 F -0.19 -3.81 16.85 44.97 0.76 -3.05 16 5 F -0.17 -2.73 16.62 44.97 0.75 -1.99 16 6 F -0.19 -4.09 15.78 44.97 0.71 -3.38 16 7 C -0.12 -1.37 5.90 32.06 0.19 -1.18 16 8 C 0.09 1.51 6.38 86.93 0.55 2.06 16 9 N -0.62 -16.96 3.32 -811.39 -2.70 -19.65 16 10 C 0.52 20.61 7.85 87.65 0.69 21.30 16 11 O -0.59 -29.59 16.31 -3.02 -0.05 -29.64 16 12 C -0.10 -4.09 4.64 29.85 0.14 -3.95 16 13 C 0.03 1.40 3.57 29.85 0.11 1.51 16 14 C -0.62 -35.21 9.11 25.60 0.23 -34.98 16 15 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 16 C -0.05 -2.69 5.46 84.65 0.46 -2.23 16 17 N -0.94 -61.44 13.65 21.45 0.29 -61.14 16 18 Si 1.13 49.78 29.90 68.60 2.05 51.83 16 19 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 20 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 22 C 0.11 2.78 5.76 86.73 0.50 3.28 16 23 H 0.09 0.85 7.39 -2.38 -0.02 0.83 16 24 H 0.09 0.65 7.72 -2.39 -0.02 0.64 16 25 H 0.07 0.81 8.05 -2.39 -0.02 0.79 16 26 H 0.09 1.17 7.32 -2.39 -0.02 1.15 16 27 H 0.14 0.70 8.04 -2.38 -0.02 0.68 16 28 H 0.10 1.19 7.67 -2.39 -0.02 1.17 16 29 H 0.10 1.47 7.48 -2.39 -0.02 1.46 16 30 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 31 H 0.10 3.68 7.85 -2.39 -0.02 3.66 16 32 H -0.02 -1.45 7.97 -2.39 -0.02 -1.47 16 33 H -0.02 -1.30 7.97 -2.39 -0.02 -1.32 16 34 H 0.25 17.08 7.22 -92.71 -0.67 16.41 16 35 H 0.05 1.54 7.36 -2.39 -0.02 1.53 16 36 H 0.08 1.95 7.85 -2.39 -0.02 1.93 16 Total: -1.00 -79.15 309.09 6.60 -72.55 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: 1.19 Total: 2.80 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 3.60 Total: -8.34 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -2.40 Total: -80.80 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.05 Total: -29.64 kcal Atomic # 9 Polarization: -10.63 SS G_CDS: 2.21 Total: -8.41 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.05 Total: 51.83 kcal Total: -79.15 6.60 -72.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874474866.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.589 kcal (2) G-P(sol) polarization free energy of solvation -79.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds