Wall clock time and date at job start Tue Mar 31 2020 01:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47072 * 2 1 4 4 C 1.52999 * 109.47000 * 120.00580 * 2 1 3 5 5 C 1.50697 * 109.46795 * 294.99262 * 4 2 1 6 6 H 1.07997 * 120.00490 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99801 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99900 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00201 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47434 * 89.99461 * 9 7 5 11 11 H 1.48501 * 109.47200 * 209.99741 * 9 7 5 12 12 H 1.48509 * 109.46947 * 329.99607 * 9 7 5 13 13 C 1.53004 * 109.46801 * 240.00408 * 2 1 3 14 14 N 1.46896 * 109.47132 * 65.34343 * 13 2 1 15 15 C 1.48046 * 111.00393 * 75.57564 * 14 13 2 16 16 C 1.51180 * 105.67930 * 146.95729 * 15 14 13 17 17 C 1.38184 * 131.77348 * 162.51750 * 16 15 14 18 18 C 1.38225 * 120.06030 * 180.02562 * 17 16 15 19 19 C 1.38241 * 120.01724 * 359.96992 * 18 17 16 20 20 C 1.38334 * 119.98393 * 0.02562 * 19 18 17 21 21 Cl 1.73603 * 119.99692 * 180.02562 * 20 19 18 22 22 C 1.38295 * 120.00672 * 359.97438 * 20 19 18 23 23 C 1.48062 * 110.99677 * 190.57350 * 14 13 2 24 24 H 1.09002 * 109.46723 * 305.01716 * 1 2 3 25 25 H 1.09002 * 109.46611 * 65.01334 * 1 2 3 26 26 H 1.08996 * 109.47420 * 185.01100 * 1 2 3 27 27 H 1.09000 * 109.47069 * 174.99850 * 4 2 1 28 28 H 1.08996 * 109.47663 * 54.99795 * 4 2 1 29 29 H 0.96999 * 119.99704 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.46836 * 185.34657 * 13 2 1 31 31 H 1.08998 * 109.47089 * 305.33988 * 13 2 1 32 32 H 1.09006 * 110.20830 * 266.01309 * 15 14 13 33 33 H 1.09001 * 110.20638 * 27.82324 * 15 14 13 34 34 H 1.08010 * 119.97167 * 359.97438 * 17 16 15 35 35 H 1.07999 * 119.99159 * 179.97438 * 18 17 16 36 36 H 1.07998 * 120.00557 * 180.02562 * 19 18 17 37 37 H 1.08998 * 110.20540 * 332.08872 * 23 14 13 38 38 H 1.09003 * 110.20400 * 93.98916 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0569 2.4765 6 1 1.0802 0.9741 2.3757 7 6 1.9924 -0.4024 3.7282 8 7 1.6442 0.2765 4.7994 9 14 2.9626 -1.9892 3.9027 10 1 4.4161 -1.6859 3.8790 11 1 2.6144 -2.6433 5.1896 12 1 2.6286 -2.8998 2.7781 13 6 2.0400 -0.7212 -1.2494 14 7 1.6584 0.0418 -2.4452 15 6 2.5142 1.2391 -2.6062 16 6 2.6518 1.4455 -4.0975 17 6 3.0489 2.5393 -4.8427 18 6 3.0863 2.4606 -6.2222 19 6 2.7269 1.2868 -6.8579 20 6 2.3293 0.1910 -6.1131 21 17 1.8785 -1.2834 -6.9111 22 6 2.2918 0.2696 -4.7329 23 6 1.9084 -0.7415 -3.6765 24 1 -0.3633 0.5897 0.8417 25 1 -0.3632 0.4341 -0.9315 26 1 -0.3634 -1.0237 0.0898 27 1 3.1263 -0.7996 1.2055 28 1 1.6054 -1.7199 1.2951 29 1 1.8914 -0.0465 5.6800 30 1 3.1258 -0.8049 -1.2028 31 1 1.6006 -1.7175 -1.2985 32 1 2.0384 2.1064 -2.1483 33 1 3.4922 1.0660 -2.1569 34 1 3.3295 3.4569 -4.3468 35 1 3.3964 3.3163 -6.8035 36 1 2.7566 1.2254 -7.9357 37 1 2.7245 -1.4459 -3.5154 38 1 1.0046 -1.2730 -3.9745 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877530355.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:58 Heat of formation + Delta-G solvation = 17.390300 kcal Electronic energy + Delta-G solvation = -18992.501613 eV Core-core repulsion = 16053.201963 eV Total energy + Delta-G solvation = -2939.299650 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.61327 -37.69032 -36.59605 -34.99318 -32.33981 -31.41793 -30.70992 -27.72135 -27.49143 -26.04143 -23.53450 -21.89897 -21.66561 -21.17482 -18.97747 -16.99372 -16.67762 -16.13688 -15.79670 -15.39321 -14.46090 -14.39629 -14.09943 -13.81509 -13.37728 -13.19129 -13.03572 -12.66341 -12.48208 -12.16268 -11.88167 -11.72699 -11.63468 -11.34973 -11.31445 -11.00969 -10.96161 -10.69971 -10.40393 -9.92918 -9.65200 -9.44576 -9.19646 -9.03967 -8.90471 -8.51433 -8.24261 -6.01761 -3.98725 0.90375 0.97312 1.91478 3.30939 3.32946 3.38892 3.42150 3.96434 4.13673 4.34969 4.46807 4.68515 4.98699 5.07917 5.15660 5.25968 5.31748 5.42774 5.47437 5.56202 5.64895 5.73403 5.78329 5.92404 5.98680 6.07514 6.20180 6.24958 6.33754 6.51222 6.56062 6.80210 6.86346 7.00599 7.14015 7.16613 7.30583 7.48280 7.82676 8.57747 9.04246 9.61096 11.11702 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030665 B = 0.003495 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.873311 B = 8008.672330 C = 8427.901113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.069 4.069 3 H 0.062 0.938 4 C -0.010 4.010 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.877 3.123 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.046 3.954 14 N -0.496 5.496 15 C 0.073 3.927 16 C -0.082 4.082 17 C -0.098 4.098 18 C -0.107 4.107 19 C -0.115 4.115 20 C -0.016 4.016 21 Cl -0.073 7.073 22 C -0.092 4.092 23 C 0.075 3.925 24 H 0.057 0.943 25 H 0.046 0.954 26 H 0.040 0.960 27 H 0.008 0.992 28 H 0.016 0.984 29 H 0.262 0.738 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.064 0.936 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.170 1.194 -24.156 24.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.088 4.088 3 H 0.080 0.920 4 C -0.048 4.048 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.082 4.082 14 N -0.219 5.219 15 C -0.054 4.054 16 C -0.083 4.083 17 C -0.116 4.116 18 C -0.125 4.125 19 C -0.133 4.133 20 C -0.043 4.043 21 Cl -0.044 7.044 22 C -0.094 4.094 23 C -0.052 4.052 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.026 0.974 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.081 0.919 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.559 1.166 -23.931 24.096 hybrid contribution 1.403 -1.194 0.084 1.844 sum 3.962 -0.028 -23.847 24.174 Atomic orbital electron populations 1.21601 0.95177 1.00889 1.00599 1.20970 0.96440 0.99125 0.92235 0.91994 1.19637 0.95350 0.96276 0.93509 1.21116 1.35318 1.09515 0.89037 0.90804 1.25028 0.95720 0.96866 0.95967 1.69915 1.47207 1.39303 0.98008 0.86817 0.80578 0.84581 0.77513 1.20450 1.21463 1.19071 1.22671 0.98060 0.97531 0.89906 1.65341 1.49710 1.05354 1.01469 1.21765 0.97016 0.96298 0.90339 1.20724 0.97824 0.93355 0.96363 1.20639 0.99451 0.98014 0.93524 1.21026 0.99884 0.97430 0.94195 1.20961 1.00414 0.91832 1.00134 1.20334 1.04223 0.88817 0.90925 1.98367 1.91173 1.34880 1.80022 1.20443 0.99766 0.97168 0.92004 1.21667 1.01183 0.94322 0.88047 0.92348 0.93482 0.94126 0.97417 0.96573 0.92831 0.94511 0.90733 0.88435 0.91443 0.85166 0.84795 0.84794 0.91850 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.87 37.16 0.33 -2.05 16 2 C -0.07 -1.33 2.40 -90.62 -0.22 -1.54 16 3 H 0.06 1.23 7.61 -51.93 -0.39 0.83 16 4 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 5 C -0.51 -14.34 9.02 -34.44 -0.31 -14.65 16 6 H 0.07 2.22 7.30 -52.49 -0.38 1.84 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 9 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.31 6.54 56.52 0.37 -5.95 16 13 C 0.05 0.73 4.07 -3.82 -0.02 0.71 16 14 N -0.50 -7.11 4.82 -234.91 -1.13 -8.25 16 15 C 0.07 0.96 5.92 -4.11 -0.02 0.93 16 16 C -0.08 -0.97 6.26 -104.34 -0.65 -1.63 16 17 C -0.10 -0.95 10.04 -39.61 -0.40 -1.35 16 18 C -0.11 -0.91 10.05 -39.59 -0.40 -1.31 16 19 C -0.11 -1.06 9.83 -39.55 -0.39 -1.45 16 20 C -0.02 -0.18 6.32 -39.53 -0.25 -0.43 16 21 Cl -0.07 -0.76 28.79 -51.86 -1.49 -2.25 16 22 C -0.09 -1.13 6.14 -104.30 -0.64 -1.77 16 23 C 0.08 0.96 6.37 -4.10 -0.03 0.93 16 24 H 0.06 1.22 7.10 -51.93 -0.37 0.85 16 25 H 0.05 0.81 7.63 -51.93 -0.40 0.42 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 28 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.04 0.57 7.66 -51.93 -0.40 0.17 16 31 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 32 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.07 0.88 7.51 -51.93 -0.39 0.49 16 34 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.06 0.77 7.81 -51.93 -0.41 0.37 16 38 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 322.43 15.07 4.86 4.86 Total: -1.00 -30.30 322.43 -10.48 -40.77 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -5.63 Total: -2.92 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -3.19 Total: -22.14 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: -0.36 Total: -35.34 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.49 Total: -2.25 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.30 -10.48 -40.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877530355.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.163 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds