Wall clock time and date at job start Tue Mar 31 2020 01:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46980 * 2 1 4 4 N 1.46895 * 109.47342 * 120.00214 * 2 1 3 5 5 C 1.46901 * 111.00059 * 148.47485 * 4 2 1 6 6 C 1.50703 * 109.47331 * 287.57501 * 5 4 2 7 7 H 1.07998 * 119.99672 * 4.86456 * 6 5 4 8 8 C 1.37875 * 120.00136 * 184.86113 * 6 5 4 9 9 N 1.31514 * 120.00041 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99925 * 0.02562 * 8 6 5 11 11 H 1.48492 * 109.47657 * 89.99810 * 10 8 6 12 12 H 1.48507 * 109.46793 * 209.99835 * 10 8 6 13 13 H 1.48504 * 109.47395 * 329.99334 * 10 8 6 14 14 C 1.46903 * 111.00275 * 272.42731 * 4 2 1 15 15 C 1.50704 * 109.46745 * 74.61276 * 14 4 2 16 16 C 1.30910 * 125.09279 * 80.69559 * 15 14 4 17 17 N 1.37483 * 116.32391 * 180.02562 * 16 15 14 18 18 C 1.38923 * 139.53873 * 179.97438 * 17 16 15 19 19 C 1.34334 * 107.12662 * 180.02562 * 18 17 16 20 20 N 1.33875 * 108.38270 * 359.97438 * 19 18 17 21 21 C 1.32349 * 109.14017 * 0.02562 * 20 19 18 22 22 S 1.75786 * 125.08934 * 260.39329 * 15 14 4 23 23 H 1.09000 * 109.47246 * 293.96543 * 1 2 3 24 24 H 1.09001 * 109.47155 * 53.97471 * 1 2 3 25 25 H 1.09006 * 109.46449 * 173.97099 * 1 2 3 26 26 H 1.09005 * 109.47445 * 240.00284 * 2 1 3 27 27 H 1.09003 * 109.47091 * 170.63069 * 3 2 1 28 28 H 1.08997 * 109.47140 * 290.63518 * 3 2 1 29 29 H 1.09001 * 109.46717 * 50.63650 * 3 2 1 30 30 H 1.08998 * 109.47280 * 47.57894 * 5 4 2 31 31 H 1.09001 * 109.47432 * 167.57777 * 5 4 2 32 32 H 0.96996 * 120.00039 * 180.02562 * 9 8 6 33 33 H 1.08994 * 109.47094 * 194.61088 * 14 4 2 34 34 H 1.08998 * 109.47194 * 314.61678 * 14 4 2 35 35 H 1.07997 * 121.83386 * 359.97438 * 16 15 14 36 36 H 1.07998 * 126.43611 * 0.02562 * 18 17 16 37 37 H 1.07998 * 125.80749 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 3.2973 -1.3668 0.9331 6 6 3.0566 -2.5743 0.0642 7 1 2.0680 -2.7726 -0.3228 8 6 4.0984 -3.4258 -0.2368 9 7 3.8884 -4.4793 -0.9956 10 14 5.8081 -3.0831 0.4331 11 1 5.9680 -3.7533 1.7485 12 1 6.8250 -3.6049 -0.5151 13 1 5.9908 -1.6186 0.5982 14 6 2.1405 0.2362 2.3312 15 6 0.7686 0.5572 2.8660 16 6 0.0802 -0.2046 3.6782 17 7 -1.1563 0.2650 4.0534 18 6 -2.2348 -0.1118 4.8438 19 6 -3.1528 0.8646 4.7519 20 7 -2.6766 1.8169 3.9403 21 6 -1.4742 1.4632 3.5150 22 16 -0.1438 2.0142 2.4987 23 1 -0.3634 0.4174 0.9391 24 1 -0.3633 0.6044 -0.8311 25 1 -0.3632 -1.0221 -0.1079 26 1 1.8934 -0.5138 -0.8900 27 1 3.1171 1.4472 0.1673 28 1 1.8196 1.9058 -0.9617 29 1 1.5465 2.0023 0.7946 30 1 3.9712 -0.6796 0.4216 31 1 3.7457 -1.6811 1.8756 32 1 4.6212 -5.0785 -1.2070 33 1 2.7382 -0.2249 3.1173 34 1 2.6244 1.1542 1.9978 35 1 0.4623 -1.1502 4.0332 36 1 -2.3193 -1.0192 5.4233 37 1 -4.1115 0.8793 5.2489 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891696200.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:25 Heat of formation + Delta-G solvation = 115.988939 kcal Electronic energy + Delta-G solvation = -19776.620768 eV Core-core repulsion = 16875.933133 eV Total energy + Delta-G solvation = -2900.687635 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.53454 -38.57127 -36.21897 -32.88236 -31.75918 -30.84887 -29.66986 -27.58049 -26.79245 -25.08141 -23.37715 -21.82744 -21.44571 -20.14952 -19.03387 -18.42413 -16.81144 -16.08231 -15.81554 -15.50610 -14.98503 -14.56521 -14.36020 -14.13752 -13.60888 -13.28888 -13.10739 -12.64940 -12.46622 -12.28838 -12.02483 -11.84846 -11.63247 -11.13189 -10.98227 -10.85264 -10.73715 -10.58549 -10.27651 -10.20767 -10.03503 -9.67297 -9.39647 -8.75094 -8.64211 -7.58170 -7.55383 -6.12411 -4.10330 0.91033 1.01311 1.66941 2.29141 2.61573 2.89117 3.20993 3.29158 3.29940 4.33841 4.42623 4.59809 4.77562 5.06916 5.16041 5.19729 5.25207 5.36616 5.45312 5.53041 5.68400 5.76231 5.81065 6.04761 6.11574 6.14914 6.19493 6.30144 6.49532 6.56590 6.70074 6.79436 6.83346 6.90225 7.48498 7.70916 7.76926 7.87128 8.55637 8.97661 9.48385 11.00701 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027886 B = 0.004789 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.835948 B = 5844.874209 C = 6147.583325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.078 3.922 3 C -0.174 4.174 4 N -0.515 5.515 5 C 0.163 3.837 6 C -0.508 4.508 7 H 0.081 0.919 8 C 0.070 3.930 9 N -0.898 5.898 10 Si 0.873 3.127 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.113 3.887 15 C -0.153 4.153 16 C 0.052 3.948 17 N -0.401 5.401 18 C -0.056 4.056 19 C 0.010 3.990 20 N -0.468 5.468 21 C 0.131 3.869 22 S 0.181 5.819 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.045 0.955 30 H -0.007 1.007 31 H 0.024 0.976 32 H 0.264 0.736 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.184 0.816 36 H 0.181 0.819 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.759 11.288 9.568 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 C -0.233 4.233 4 N -0.239 5.239 5 C 0.038 3.962 6 C -0.547 4.547 7 H 0.099 0.901 8 C -0.132 4.132 9 N -0.537 5.537 10 Si 0.701 3.299 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.193 1.193 14 C -0.017 4.017 15 C -0.272 4.272 16 C -0.076 4.076 17 N -0.079 5.079 18 C -0.189 4.189 19 C -0.140 4.140 20 N -0.191 5.191 21 C -0.235 4.235 22 S 0.431 5.569 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.114 0.886 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.010 0.990 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.201 0.799 36 H 0.198 0.802 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -7.132 12.543 8.655 16.825 hybrid contribution 1.566 -1.480 1.207 2.470 sum -5.566 11.062 9.862 15.831 Atomic orbital electron populations 1.22142 0.95334 1.01864 1.01440 1.21696 0.95226 0.91402 0.94734 1.22490 1.00848 0.98730 1.01228 1.62161 1.31589 1.26615 1.03540 1.20243 0.85221 0.94324 0.96449 1.20977 0.97795 1.06389 1.29515 0.90080 1.24886 0.98550 0.94842 0.94933 1.69885 1.32354 1.14068 1.37364 0.86899 0.84936 0.78910 0.79182 1.20186 1.21176 1.19303 1.20738 0.87658 0.97487 0.95840 1.23881 1.02972 0.97717 1.02665 1.20271 0.83928 1.01791 1.01597 1.43871 1.13284 1.16803 1.33909 1.22800 0.87652 1.04356 1.04111 1.22360 1.00298 0.90952 1.00382 1.70570 1.05260 1.28572 1.14742 1.26537 1.00491 0.90364 1.06129 1.84792 1.04080 1.20054 1.48011 0.92446 0.93286 0.92437 0.88613 0.92462 0.92069 0.93660 0.98981 0.95751 0.92591 0.88923 0.92184 0.79924 0.80225 0.80019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.26 37.16 0.34 -2.09 16 2 C 0.08 1.36 2.64 -67.71 -0.18 1.18 16 3 C -0.17 -2.50 7.78 37.16 0.29 -2.21 16 4 N -0.52 -9.55 4.28 -229.51 -0.98 -10.53 16 5 C 0.16 3.58 3.72 -4.97 -0.02 3.56 16 6 C -0.51 -13.58 8.93 -34.44 -0.31 -13.88 16 7 H 0.08 2.40 7.99 -52.49 -0.42 1.98 16 8 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 9 N -0.90 -26.60 13.96 55.43 0.77 -25.83 16 10 Si 0.87 20.37 27.37 -169.99 -4.65 15.72 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.27 -5.95 6.69 56.52 0.38 -5.58 16 14 C 0.11 1.67 4.99 -4.97 -0.02 1.65 16 15 C -0.15 -2.13 4.09 -36.00 -0.15 -2.27 16 16 C 0.05 0.71 11.11 -16.71 -0.19 0.53 16 17 N -0.40 -5.68 3.19 -63.78 -0.20 -5.88 16 18 C -0.06 -0.67 12.04 -15.71 -0.19 -0.86 16 19 C 0.01 0.13 11.82 -18.04 -0.21 -0.09 16 20 N -0.47 -7.36 11.32 -13.56 -0.15 -7.51 16 21 C 0.13 2.01 8.92 -88.72 -0.79 1.22 16 22 S 0.18 2.44 18.78 -107.50 -2.02 0.42 16 23 H 0.06 0.90 3.49 -40.13 -0.14 0.76 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.10 1.93 7.04 -51.93 -0.37 1.57 16 27 H 0.06 0.83 7.24 -51.93 -0.38 0.46 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.04 0.59 4.29 -51.90 -0.22 0.37 16 30 H -0.01 -0.17 7.09 -51.93 -0.37 -0.53 16 31 H 0.02 0.53 6.84 -51.93 -0.36 0.17 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.09 1.27 7.67 -51.93 -0.40 0.87 16 34 H 0.06 0.82 5.25 -51.93 -0.27 0.55 16 35 H 0.18 2.21 8.06 -52.49 -0.42 1.79 16 36 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 304.39 15.07 4.59 4.59 Total: -1.00 -31.00 304.39 -8.79 -39.79 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -4.61 Total: 0.69 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -1.52 Total: -11.46 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.57 Total: -49.75 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.65 Total: 15.72 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.02 Total: 0.42 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.00 -8.79 -39.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891696200.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.777 kcal (2) G-P(sol) polarization free energy of solvation -31.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds