Wall clock time and date at job start Tue Mar 31 2020 01:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46980 * 2 1 4 4 N 1.46895 * 109.47342 * 120.00214 * 2 1 3 5 5 C 1.46901 * 111.00059 * 148.47485 * 4 2 1 6 6 C 1.50703 * 109.47331 * 287.57501 * 5 4 2 7 7 H 1.07998 * 119.99672 * 4.86456 * 6 5 4 8 8 C 1.37875 * 120.00136 * 184.86113 * 6 5 4 9 9 N 1.31514 * 120.00041 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99925 * 0.02562 * 8 6 5 11 11 H 1.48492 * 109.47657 * 89.99810 * 10 8 6 12 12 H 1.48507 * 109.46793 * 209.99835 * 10 8 6 13 13 H 1.48504 * 109.47395 * 329.99334 * 10 8 6 14 14 C 1.46903 * 111.00275 * 272.42731 * 4 2 1 15 15 C 1.50704 * 109.46745 * 74.61276 * 14 4 2 16 16 C 1.30910 * 125.09279 * 80.69559 * 15 14 4 17 17 N 1.37483 * 116.32391 * 180.02562 * 16 15 14 18 18 C 1.38923 * 139.53873 * 179.97438 * 17 16 15 19 19 C 1.34334 * 107.12662 * 180.02562 * 18 17 16 20 20 N 1.33875 * 108.38270 * 359.97438 * 19 18 17 21 21 C 1.32349 * 109.14017 * 0.02562 * 20 19 18 22 22 S 1.75786 * 125.08934 * 260.39329 * 15 14 4 23 23 H 1.09000 * 109.47246 * 293.96543 * 1 2 3 24 24 H 1.09001 * 109.47155 * 53.97471 * 1 2 3 25 25 H 1.09006 * 109.46449 * 173.97099 * 1 2 3 26 26 H 1.09005 * 109.47445 * 240.00284 * 2 1 3 27 27 H 1.09003 * 109.47091 * 170.63069 * 3 2 1 28 28 H 1.08997 * 109.47140 * 290.63518 * 3 2 1 29 29 H 1.09001 * 109.46717 * 50.63650 * 3 2 1 30 30 H 1.08998 * 109.47280 * 47.57894 * 5 4 2 31 31 H 1.09001 * 109.47432 * 167.57777 * 5 4 2 32 32 H 0.96996 * 120.00039 * 180.02562 * 9 8 6 33 33 H 1.08994 * 109.47094 * 194.61088 * 14 4 2 34 34 H 1.08998 * 109.47194 * 314.61678 * 14 4 2 35 35 H 1.07997 * 121.83386 * 359.97438 * 16 15 14 36 36 H 1.07998 * 126.43611 * 0.02562 * 18 17 16 37 37 H 1.07998 * 125.80749 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 3.2973 -1.3668 0.9331 6 6 3.0566 -2.5743 0.0642 7 1 2.0680 -2.7726 -0.3228 8 6 4.0984 -3.4258 -0.2368 9 7 3.8884 -4.4793 -0.9956 10 14 5.8081 -3.0831 0.4331 11 1 5.9680 -3.7533 1.7485 12 1 6.8250 -3.6049 -0.5151 13 1 5.9908 -1.6186 0.5982 14 6 2.1405 0.2362 2.3312 15 6 0.7686 0.5572 2.8660 16 6 0.0802 -0.2046 3.6782 17 7 -1.1563 0.2650 4.0534 18 6 -2.2348 -0.1118 4.8438 19 6 -3.1528 0.8646 4.7519 20 7 -2.6766 1.8169 3.9403 21 6 -1.4742 1.4632 3.5150 22 16 -0.1438 2.0142 2.4987 23 1 -0.3634 0.4174 0.9391 24 1 -0.3633 0.6044 -0.8311 25 1 -0.3632 -1.0221 -0.1079 26 1 1.8934 -0.5138 -0.8900 27 1 3.1171 1.4472 0.1673 28 1 1.8196 1.9058 -0.9617 29 1 1.5465 2.0023 0.7946 30 1 3.9712 -0.6796 0.4216 31 1 3.7457 -1.6811 1.8756 32 1 4.6212 -5.0785 -1.2070 33 1 2.7382 -0.2249 3.1173 34 1 2.6244 1.1542 1.9978 35 1 0.4623 -1.1502 4.0332 36 1 -2.3193 -1.0192 5.4233 37 1 -4.1115 0.8793 5.2489 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891696200.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:24 Heat of formation + Delta-G solvation = 96.666730 kcal Electronic energy + Delta-G solvation = -19777.458641 eV Core-core repulsion = 16875.933133 eV Total energy + Delta-G solvation = -2901.525509 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.55048 -39.90531 -37.33423 -34.86504 -33.02734 -32.29811 -30.76019 -29.06113 -28.11321 -26.42141 -24.46989 -23.56901 -22.47821 -21.33784 -20.31609 -19.47782 -18.82832 -17.29642 -16.92239 -16.68034 -16.39028 -16.06542 -15.54275 -15.43178 -14.78715 -14.65522 -14.38040 -14.26015 -13.88357 -13.60702 -13.40578 -13.11496 -12.77476 -12.67057 -12.45510 -12.27685 -12.05449 -11.99514 -11.85263 -11.60910 -11.45788 -11.25947 -10.84310 -10.72787 -9.79891 -9.00411 -8.60483 -8.23704 -6.26656 -0.13305 -0.03102 0.62394 1.23835 1.38976 1.40684 1.50566 1.62246 1.90999 2.38059 3.08853 3.22214 3.43653 3.83671 3.95813 4.06882 4.11744 4.28419 4.35513 4.47746 4.52236 4.60016 4.69099 4.74992 4.78235 4.92059 4.96281 5.00765 5.13994 5.17322 5.32468 5.46012 5.54409 5.58719 5.84702 6.03576 6.37757 6.66075 6.70733 6.80864 7.36511 8.93313 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027886 B = 0.004789 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.835948 B = 5844.874209 C = 6147.583325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.077 3.923 3 C -0.167 4.167 4 N -0.531 5.531 5 C 0.173 3.827 6 C -0.509 4.509 7 H 0.032 0.968 8 C 0.006 3.994 9 N -0.952 5.952 10 Si 0.947 3.053 11 H -0.265 1.265 12 H -0.289 1.289 13 H -0.244 1.244 14 C 0.115 3.885 15 C -0.162 4.162 16 C 0.053 3.947 17 N -0.407 5.407 18 C -0.053 4.053 19 C 0.000 4.000 20 N -0.498 5.498 21 C 0.100 3.900 22 S 0.194 5.806 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.029 0.971 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.060 0.940 30 H -0.004 1.004 31 H 0.038 0.962 32 H 0.265 0.735 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.198 0.802 36 H 0.215 0.785 37 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.120 12.780 11.573 18.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.031 4.031 3 C -0.225 4.225 4 N -0.255 5.255 5 C 0.047 3.953 6 C -0.548 4.548 7 H 0.051 0.949 8 C -0.190 4.190 9 N -0.593 5.593 10 Si 0.770 3.230 11 H -0.190 1.190 12 H -0.215 1.215 13 H -0.167 1.167 14 C -0.015 4.015 15 C -0.281 4.281 16 C -0.076 4.076 17 N -0.086 5.086 18 C -0.185 4.185 19 C -0.149 4.149 20 N -0.223 5.223 21 C -0.265 4.265 22 S 0.444 5.556 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.014 0.986 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.126 0.874 34 H 0.094 0.906 35 H 0.214 0.786 36 H 0.232 0.768 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -6.520 14.069 10.678 18.828 hybrid contribution 1.171 -1.967 0.592 2.365 sum -5.349 12.102 11.270 17.381 Atomic orbital electron populations 1.22095 0.94755 1.00570 1.02693 1.21615 0.95654 0.92879 0.92988 1.22395 1.00901 0.96509 1.02716 1.61994 1.29903 1.28620 1.05009 1.19980 0.86911 0.92665 0.95771 1.21233 0.95700 1.08157 1.29669 0.94928 1.25845 1.03460 0.94474 0.95268 1.70065 1.33879 1.15749 1.39647 0.85727 0.78642 0.80115 0.78491 1.19011 1.21541 1.16733 1.20778 0.88602 0.97426 0.94672 1.23770 1.02838 0.98283 1.03192 1.20527 0.83760 1.02081 1.01197 1.44085 1.13734 1.16625 1.34174 1.23503 0.86584 1.05232 1.03188 1.23009 1.01658 0.90311 0.99892 1.70533 1.05788 1.30097 1.15847 1.26800 1.01047 0.91308 1.07315 1.84586 1.03510 1.19641 1.47838 0.91478 0.91570 0.95130 0.92419 0.92275 0.90629 0.92173 0.98591 0.94422 0.92637 0.87449 0.90619 0.78570 0.76802 0.76848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 9.26 71.98 0.67 -3.99 16 2 C 0.08 2.67 2.64 44.92 0.12 2.79 16 3 C -0.17 -4.46 7.78 71.98 0.56 -3.90 16 4 N -0.53 -19.24 4.28 -880.05 -3.77 -23.01 16 5 C 0.17 7.41 3.72 85.56 0.32 7.73 16 6 C -0.51 -27.87 8.93 25.60 0.23 -27.65 16 7 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 8 C 0.01 0.35 5.47 84.65 0.46 0.81 16 9 N -0.95 -58.33 13.96 21.45 0.30 -58.03 16 10 Si 0.95 41.55 27.37 68.60 1.88 43.43 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 12 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.24 -9.67 6.69 99.48 0.67 -9.01 16 14 C 0.12 3.12 4.99 85.56 0.43 3.54 16 15 C -0.16 -4.17 4.09 25.74 0.11 -4.07 16 16 C 0.05 1.33 11.11 83.86 0.93 2.26 16 17 N -0.41 -10.77 3.19 -355.69 -1.13 -11.91 16 18 C -0.05 -1.13 12.04 82.68 1.00 -0.14 16 19 C 0.00 0.01 11.82 83.49 0.99 0.99 16 20 N -0.50 -15.02 11.32 -196.81 -2.23 -17.25 16 21 C 0.10 2.95 8.92 179.68 1.60 4.55 16 22 S 0.19 4.93 18.78 -56.49 -1.06 3.87 16 23 H 0.07 2.06 3.49 -9.89 -0.03 2.03 16 24 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.06 2.42 7.04 -2.38 -0.02 2.40 16 27 H 0.06 1.57 7.24 -2.39 -0.02 1.55 16 28 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.06 1.43 4.29 -2.40 -0.01 1.42 16 30 H 0.00 -0.15 7.09 -2.39 -0.02 -0.17 16 31 H 0.04 1.52 6.84 -2.39 -0.02 1.51 16 32 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.11 2.60 7.67 -2.39 -0.02 2.58 16 34 H 0.08 1.84 5.25 -2.39 -0.01 1.83 16 35 H 0.20 4.30 8.06 -2.91 -0.02 4.28 16 36 H 0.22 2.84 8.06 -2.91 -0.02 2.81 16 37 H 0.21 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -69.34 304.39 2.41 -66.94 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 1.01 Total: 13.02 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 7.40 Total: -17.06 kcal Atomic # 7 Polarization: -103.36 SS G_CDS: -6.83 Total: -110.19 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 1.88 Total: 43.43 kcal Atomic # 16 Polarization: 4.93 SS G_CDS: -1.06 Total: 3.87 kcal Total: -69.34 2.41 -66.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891696200.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.604 kcal (2) G-P(sol) polarization free energy of solvation -69.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds