Wall clock time and date at job start Tue Mar 31 2020 01:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 115.55222 * 2 1 4 4 C 1.52997 * 117.49660 * 145.67461 * 2 1 3 5 5 H 1.09000 * 117.50060 * 359.97438 * 4 2 1 6 6 C 1.52998 * 117.49924 * 214.99764 * 4 2 1 7 7 N 1.46897 * 109.47563 * 174.99970 * 6 4 2 8 8 C 1.46900 * 111.00433 * 180.02562 * 7 6 4 9 9 C 1.50700 * 109.47223 * 180.02562 * 8 7 6 10 10 C 1.38629 * 119.75032 * 90.00166 * 9 8 7 11 11 C 1.37624 * 120.24653 * 180.23096 * 10 9 8 12 12 C 1.40716 * 119.74224 * 359.52057 * 11 10 9 13 13 C 1.41396 * 120.23809 * 180.23246 * 12 11 10 14 14 H 1.08004 * 119.99614 * 155.44655 * 13 12 11 15 15 C 1.39940 * 120.00247 * 335.43838 * 13 12 11 16 16 N 1.30823 * 120.00151 * 342.11422 * 15 13 12 17 17 Si 1.86806 * 119.99767 * 162.10433 * 15 13 12 18 18 H 1.48496 * 109.46866 * 94.67188 * 17 15 13 19 19 H 1.48498 * 109.46883 * 214.66477 * 17 15 13 20 20 H 1.48493 * 109.47470 * 334.66957 * 17 15 13 21 21 C 1.40712 * 119.51327 * 0.46996 * 12 11 10 22 22 C 1.37612 * 119.74657 * 359.76314 * 21 12 11 23 23 C 1.52994 * 60.00292 * 107.50859 * 4 2 1 24 24 H 1.09004 * 117.49955 * 107.48569 * 23 4 2 25 25 Cl 1.80306 * 117.50146 * 252.50954 * 23 4 2 26 26 H 1.09000 * 109.47302 * 274.32855 * 1 2 3 27 27 H 1.09005 * 109.47395 * 34.32779 * 1 2 3 28 28 H 1.09000 * 109.47474 * 154.33038 * 1 2 3 29 29 H 1.09003 * 109.46807 * 54.99906 * 6 4 2 30 30 H 1.08998 * 109.47093 * 295.00414 * 6 4 2 31 31 H 1.00904 * 111.00044 * 56.04832 * 7 6 4 32 32 H 1.09002 * 109.47085 * 59.99646 * 8 7 6 33 33 H 1.09002 * 109.46852 * 300.00308 * 8 7 6 34 34 H 1.07999 * 119.87639 * 359.94983 * 10 9 8 35 35 H 1.07997 * 120.12681 * 179.71511 * 11 10 9 36 36 H 0.97002 * 120.00064 * 180.02562 * 16 15 13 37 37 H 1.07998 * 120.12387 * 179.77536 * 21 12 11 38 38 H 1.08003 * 119.88187 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2364 -1.1208 0.7653 5 1 1.6111 -1.8579 1.2691 6 6 3.5487 -0.7755 1.4720 7 7 4.0095 -1.9371 2.2442 8 6 5.2698 -1.6415 2.9385 9 6 5.7105 -2.8539 3.7176 10 6 6.5299 -3.7971 3.1169 11 6 6.9346 -4.9105 3.8174 12 6 6.5217 -5.0842 5.1514 13 6 6.9353 -6.2217 5.8824 14 1 6.9736 -6.1857 6.9611 15 6 7.2948 -7.3941 5.2082 16 7 6.9289 -7.5721 3.9648 17 14 8.2975 -8.7048 6.0835 18 1 7.3845 -9.7268 6.6553 19 1 9.2198 -9.3511 5.1156 20 1 9.0853 -8.0785 7.1754 21 6 5.6902 -4.1202 5.7508 22 6 5.2938 -3.0171 5.0298 23 6 2.2368 -1.1210 -0.7647 24 1 3.1720 -0.8751 -1.2677 25 17 1.2030 -2.3412 -1.5974 26 1 -0.3634 0.0776 1.0247 27 1 -0.3634 0.8487 -0.5795 28 1 -0.3634 -0.9262 -0.4452 29 1 3.3883 0.0673 2.1444 30 1 4.3020 -0.5103 0.7302 31 1 4.1037 -2.7497 1.6535 32 1 5.1211 -0.8048 3.6210 33 1 6.0353 -1.3820 2.2071 34 1 6.8482 -3.6600 2.0941 35 1 7.5692 -5.6463 3.3461 36 1 7.1778 -8.3849 3.4976 37 1 5.3644 -4.2455 6.7728 38 1 4.6553 -2.2761 5.4875 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895090060.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:12 Heat of formation + Delta-G solvation = 20.499543 kcal Electronic energy + Delta-G solvation = -18291.278288 eV Core-core repulsion = 15352.113465 eV Total energy + Delta-G solvation = -2939.164823 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.68903 -37.68073 -35.85740 -35.02808 -33.47681 -30.53117 -29.27050 -28.89386 -26.87723 -24.73058 -22.74706 -21.13208 -20.97976 -20.65023 -19.74859 -17.27976 -16.39324 -15.33744 -15.27224 -14.80130 -14.43196 -14.11425 -13.84219 -13.44316 -13.28187 -13.14338 -12.58053 -12.40695 -11.96670 -11.92949 -11.90405 -11.64333 -11.50329 -11.37799 -11.04512 -10.95903 -10.93208 -10.54975 -10.34144 -9.98605 -9.79592 -9.54443 -9.38272 -9.12049 -8.10408 -7.43702 -7.28248 -6.75538 -4.33845 1.99362 2.74457 3.07049 3.09763 3.11238 3.18376 3.29333 3.93518 4.15149 4.30717 4.59930 4.62411 4.96784 5.02466 5.20292 5.37538 5.43416 5.55695 5.62370 5.70518 5.76505 5.84233 5.90354 5.96537 6.13793 6.28047 6.37695 6.43258 6.95908 7.08613 7.28618 7.36578 7.39751 7.62687 7.71732 7.90436 8.06765 8.15188 8.31955 8.65303 8.90881 8.99250 10.18994 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025993 B = 0.003030 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.965593 B = 9239.173229 C = 9894.639310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.137 4.137 3 H 0.115 0.885 4 C -0.127 4.127 5 H 0.126 0.874 6 C 0.087 3.913 7 N -0.683 5.683 8 C 0.126 3.874 9 C -0.216 4.216 10 C -0.095 4.095 11 C -0.166 4.166 12 C 0.113 3.887 13 C -0.463 4.463 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.792 5.792 17 Si 0.906 3.094 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.261 1.261 21 C -0.228 4.228 22 C -0.068 4.068 23 C -0.080 4.080 24 H 0.134 0.866 25 Cl -0.143 7.143 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.026 0.974 31 H 0.344 0.656 32 H 0.061 0.939 33 H 0.019 0.981 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.280 0.720 37 H 0.091 0.909 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.209 11.534 -8.513 16.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.156 4.156 3 H 0.133 0.867 4 C -0.146 4.146 5 H 0.144 0.856 6 C -0.043 4.043 7 N -0.314 5.314 8 C -0.002 4.002 9 C -0.217 4.217 10 C -0.114 4.114 11 C -0.186 4.186 12 C 0.110 3.890 13 C -0.492 4.492 14 H 0.095 0.905 15 C -0.142 4.142 16 N -0.417 5.417 17 Si 0.730 3.270 18 H -0.196 1.196 19 H -0.201 1.201 20 H -0.184 1.184 21 C -0.248 4.248 22 C -0.087 4.087 23 C -0.123 4.123 24 H 0.152 0.848 25 Cl -0.116 7.116 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.044 0.956 31 H 0.162 0.838 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.100 0.900 35 H 0.134 0.866 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.667 11.414 -8.229 16.025 hybrid contribution 0.996 -0.823 -0.581 1.417 sum -6.672 10.591 -8.810 15.307 Atomic orbital electron populations 1.21473 0.91867 1.03101 1.02473 1.22841 0.96537 0.94451 1.01817 0.86741 1.23041 0.99787 1.01228 0.90574 0.85614 1.21541 0.92525 0.94978 0.95242 1.60625 1.32748 1.05289 1.32777 1.20549 0.87786 0.96620 0.95246 1.18875 1.08505 0.98949 0.95414 1.20517 0.98671 0.94964 0.97210 1.21265 1.03897 0.97225 0.96170 1.17625 0.87995 0.91373 0.92007 1.19597 1.39308 0.95627 0.94712 0.90489 1.25908 0.94047 0.99457 0.94758 1.69833 1.34703 1.26041 1.11143 0.86339 0.80195 0.80224 0.80207 1.19580 1.20064 1.18445 1.20975 1.05506 0.98616 0.99703 1.20330 0.97961 0.96646 0.93738 1.25382 0.97642 0.95241 0.94081 0.84799 1.98690 1.71691 1.60339 1.80913 0.91594 0.92012 0.91182 0.90407 0.95550 0.83783 0.92019 0.96329 0.89964 0.86586 0.90922 0.89109 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 10.08 37.16 0.37 -0.72 16 2 C -0.14 -1.20 6.13 -90.62 -0.56 -1.76 16 3 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 4 C -0.13 -1.37 5.51 -90.62 -0.50 -1.87 16 5 H 0.13 1.56 8.14 -51.93 -0.42 1.14 16 6 C 0.09 1.03 5.97 -3.83 -0.02 1.00 16 7 N -0.68 -10.63 6.49 -115.06 -0.75 -11.38 16 8 C 0.13 2.15 5.80 -4.98 -0.03 2.12 16 9 C -0.22 -4.62 5.41 -104.33 -0.56 -5.18 16 10 C -0.09 -2.18 9.67 -39.66 -0.38 -2.56 16 11 C -0.17 -4.31 8.70 -38.87 -0.34 -4.65 16 12 C 0.11 3.01 5.57 -106.83 -0.60 2.42 16 13 C -0.46 -12.35 9.05 -37.74 -0.34 -12.69 16 14 H 0.08 1.98 7.91 -52.48 -0.42 1.56 16 15 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 16 N -0.79 -20.56 10.97 55.55 0.61 -19.95 16 17 Si 0.91 18.69 29.60 -169.99 -5.03 13.65 16 18 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 19 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 20 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 21 C -0.23 -5.66 9.80 -38.88 -0.38 -6.04 16 22 C -0.07 -1.53 9.67 -39.66 -0.38 -1.91 16 23 C -0.08 -0.79 6.67 -26.73 -0.18 -0.97 16 24 H 0.13 1.19 8.03 -51.93 -0.42 0.77 16 25 Cl -0.14 -1.62 27.40 -51.86 -1.42 -3.04 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.65 6.12 -51.93 -0.32 0.33 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.03 0.29 7.87 -51.93 -0.41 -0.11 16 31 H 0.34 5.60 8.72 -39.29 -0.34 5.26 16 32 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 33 H 0.02 0.30 8.08 -51.93 -0.42 -0.12 16 34 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.12 3.11 6.17 -52.49 -0.32 2.79 16 36 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 37 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 38 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 333.10 15.07 5.02 5.02 Total: -1.00 -26.91 333.10 -11.14 -38.05 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.58 Total: 8.62 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: -3.99 Total: -30.98 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: -0.14 Total: -31.33 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.65 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -1.42 Total: -3.04 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -26.91 -11.14 -38.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895090060.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.551 kcal (2) G-P(sol) polarization free energy of solvation -26.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds