Wall clock time and date at job start Tue Mar 31 2020 01:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 115.55222 * 2 1 4 4 C 1.52997 * 117.49660 * 145.67461 * 2 1 3 5 5 H 1.09000 * 117.50060 * 359.97438 * 4 2 1 6 6 C 1.52998 * 117.49924 * 214.99764 * 4 2 1 7 7 N 1.46897 * 109.47563 * 174.99970 * 6 4 2 8 8 C 1.46900 * 111.00433 * 180.02562 * 7 6 4 9 9 C 1.50700 * 109.47223 * 180.02562 * 8 7 6 10 10 C 1.38629 * 119.75032 * 90.00166 * 9 8 7 11 11 C 1.37624 * 120.24653 * 180.23096 * 10 9 8 12 12 C 1.40716 * 119.74224 * 359.52057 * 11 10 9 13 13 C 1.41396 * 120.23809 * 180.23246 * 12 11 10 14 14 H 1.08004 * 119.99614 * 155.44655 * 13 12 11 15 15 C 1.39940 * 120.00247 * 335.43838 * 13 12 11 16 16 N 1.30823 * 120.00151 * 342.11422 * 15 13 12 17 17 Si 1.86806 * 119.99767 * 162.10433 * 15 13 12 18 18 H 1.48496 * 109.46866 * 94.67188 * 17 15 13 19 19 H 1.48498 * 109.46883 * 214.66477 * 17 15 13 20 20 H 1.48493 * 109.47470 * 334.66957 * 17 15 13 21 21 C 1.40712 * 119.51327 * 0.46996 * 12 11 10 22 22 C 1.37612 * 119.74657 * 359.76314 * 21 12 11 23 23 C 1.52994 * 60.00292 * 107.50859 * 4 2 1 24 24 H 1.09004 * 117.49955 * 107.48569 * 23 4 2 25 25 Cl 1.80306 * 117.50146 * 252.50954 * 23 4 2 26 26 H 1.09000 * 109.47302 * 274.32855 * 1 2 3 27 27 H 1.09005 * 109.47395 * 34.32779 * 1 2 3 28 28 H 1.09000 * 109.47474 * 154.33038 * 1 2 3 29 29 H 1.09003 * 109.46807 * 54.99906 * 6 4 2 30 30 H 1.08998 * 109.47093 * 295.00414 * 6 4 2 31 31 H 1.00904 * 111.00044 * 56.04832 * 7 6 4 32 32 H 1.09002 * 109.47085 * 59.99646 * 8 7 6 33 33 H 1.09002 * 109.46852 * 300.00308 * 8 7 6 34 34 H 1.07999 * 119.87639 * 359.94983 * 10 9 8 35 35 H 1.07997 * 120.12681 * 179.71511 * 11 10 9 36 36 H 0.97002 * 120.00064 * 180.02562 * 16 15 13 37 37 H 1.07998 * 120.12387 * 179.77536 * 21 12 11 38 38 H 1.08003 * 119.88187 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2364 -1.1208 0.7653 5 1 1.6111 -1.8579 1.2691 6 6 3.5487 -0.7755 1.4720 7 7 4.0095 -1.9371 2.2442 8 6 5.2698 -1.6415 2.9385 9 6 5.7105 -2.8539 3.7176 10 6 6.5299 -3.7971 3.1169 11 6 6.9346 -4.9105 3.8174 12 6 6.5217 -5.0842 5.1514 13 6 6.9353 -6.2217 5.8824 14 1 6.9736 -6.1857 6.9611 15 6 7.2948 -7.3941 5.2082 16 7 6.9289 -7.5721 3.9648 17 14 8.2975 -8.7048 6.0835 18 1 7.3845 -9.7268 6.6553 19 1 9.2198 -9.3511 5.1156 20 1 9.0853 -8.0785 7.1754 21 6 5.6902 -4.1202 5.7508 22 6 5.2938 -3.0171 5.0298 23 6 2.2368 -1.1210 -0.7647 24 1 3.1720 -0.8751 -1.2677 25 17 1.2030 -2.3412 -1.5974 26 1 -0.3634 0.0776 1.0247 27 1 -0.3634 0.8487 -0.5795 28 1 -0.3634 -0.9262 -0.4452 29 1 3.3883 0.0673 2.1444 30 1 4.3020 -0.5103 0.7302 31 1 4.1037 -2.7497 1.6535 32 1 5.1211 -0.8048 3.6210 33 1 6.0353 -1.3820 2.2071 34 1 6.8482 -3.6600 2.0941 35 1 7.5692 -5.6463 3.3461 36 1 7.1778 -8.3849 3.4976 37 1 5.3644 -4.2455 6.7728 38 1 4.6553 -2.2761 5.4875 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895090060.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:11 Heat of formation + Delta-G solvation = 7.449904 kcal Electronic energy + Delta-G solvation = -18291.844163 eV Core-core repulsion = 15352.113465 eV Total energy + Delta-G solvation = -2939.730698 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.72921 -39.24918 -36.91750 -36.22413 -35.16785 -32.13731 -31.12486 -29.91744 -28.28878 -26.12208 -24.18924 -22.86624 -21.95699 -21.71871 -21.18173 -19.20081 -17.52592 -17.01866 -16.23314 -15.99571 -15.88134 -15.59077 -15.27310 -14.90011 -14.49494 -14.10245 -13.95151 -13.77569 -13.46637 -13.38902 -13.03067 -12.83056 -12.70833 -12.62090 -12.49044 -12.44115 -12.21237 -12.03149 -11.72417 -11.37709 -11.24969 -11.00236 -10.73071 -10.59319 -9.40264 -9.26492 -9.12574 -8.62646 -6.31713 0.96052 1.18173 1.21293 1.37737 1.48458 1.54236 2.21142 2.51935 2.70482 3.24947 3.53920 3.75646 3.88194 3.94830 4.27964 4.34389 4.35726 4.42165 4.56102 4.61363 4.68775 4.71926 4.82172 4.86073 4.93001 5.05103 5.07164 5.17800 5.19020 5.40075 5.41580 5.50068 5.73531 5.97581 6.12390 6.21065 6.27651 6.42360 6.49977 6.72878 6.96346 7.06644 8.34310 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025993 B = 0.003030 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.965593 B = 9239.173229 C = 9894.639310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 H 0.137 0.863 4 C -0.138 4.138 5 H 0.106 0.894 6 C 0.092 3.908 7 N -0.695 5.695 8 C 0.132 3.868 9 C -0.201 4.201 10 C -0.098 4.098 11 C -0.191 4.191 12 C 0.078 3.922 13 C -0.504 4.504 14 H 0.073 0.927 15 C 0.035 3.965 16 N -0.826 5.826 17 Si 0.981 3.019 18 H -0.263 1.263 19 H -0.265 1.265 20 H -0.259 1.259 21 C -0.246 4.246 22 C -0.072 4.072 23 C -0.082 4.082 24 H 0.148 0.852 25 Cl -0.161 7.161 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.338 0.662 32 H 0.077 0.923 33 H 0.032 0.968 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.287 0.713 37 H 0.093 0.907 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.447 13.313 -9.201 17.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.137 4.137 3 H 0.155 0.845 4 C -0.157 4.157 5 H 0.124 0.876 6 C -0.037 4.037 7 N -0.326 5.326 8 C 0.004 3.996 9 C -0.202 4.202 10 C -0.117 4.117 11 C -0.210 4.210 12 C 0.076 3.924 13 C -0.533 4.533 14 H 0.091 0.909 15 C -0.180 4.180 16 N -0.452 5.452 17 Si 0.801 3.199 18 H -0.188 1.188 19 H -0.190 1.190 20 H -0.183 1.183 21 C -0.265 4.265 22 C -0.091 4.091 23 C -0.125 4.125 24 H 0.166 0.834 25 Cl -0.134 7.134 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.155 0.845 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.922 13.217 -8.923 17.806 hybrid contribution 0.969 -1.210 -0.431 1.610 sum -6.952 12.006 -9.353 16.732 Atomic orbital electron populations 1.21505 0.91649 1.03176 1.02806 1.22972 0.96714 0.94690 0.99284 0.84490 1.22860 0.99555 1.02375 0.90919 0.87629 1.21565 0.93062 0.93583 0.95443 1.60532 1.31683 1.06580 1.33819 1.20468 0.88932 0.94598 0.95568 1.19362 1.06117 0.99500 0.95267 1.20784 0.98505 0.94329 0.98070 1.21243 1.04991 0.98315 0.96463 1.17971 0.89201 0.92378 0.92845 1.19831 1.41841 0.96888 0.94764 0.90894 1.26747 0.94475 1.01293 0.95470 1.69886 1.35641 1.27104 1.12561 0.85221 0.78517 0.77149 0.78984 1.18773 1.18977 1.18292 1.21181 1.05724 0.99372 1.00235 1.20658 0.97859 0.96383 0.94209 1.25575 0.98232 0.95316 0.93420 0.83450 1.98691 1.72240 1.61268 1.81198 0.91380 0.90432 0.92402 0.89437 0.94071 0.84500 0.90491 0.94957 0.87834 0.88410 0.90239 0.88868 0.86864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 10.08 71.98 0.73 -1.20 16 2 C -0.12 -1.71 6.13 -10.79 -0.07 -1.78 16 3 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 4 C -0.14 -2.67 5.51 -10.80 -0.06 -2.73 16 5 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 6 C 0.09 1.89 5.97 86.30 0.51 2.41 16 7 N -0.70 -19.94 6.49 -517.94 -3.36 -23.30 16 8 C 0.13 4.12 5.80 85.56 0.50 4.62 16 9 C -0.20 -8.30 5.41 -19.67 -0.11 -8.40 16 10 C -0.10 -4.48 9.67 22.22 0.21 -4.26 16 11 C -0.19 -10.17 8.70 22.73 0.20 -9.98 16 12 C 0.08 4.34 5.57 -21.29 -0.12 4.22 16 13 C -0.50 -27.96 9.05 23.46 0.21 -27.75 16 14 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 15 C 0.03 1.79 5.14 85.26 0.44 2.23 16 16 N -0.83 -44.20 10.97 21.82 0.24 -43.96 16 17 Si 0.98 39.01 29.60 68.60 2.03 41.04 16 18 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 19 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 21 C -0.25 -12.38 9.80 22.73 0.22 -12.16 16 22 C -0.07 -3.19 9.67 22.22 0.21 -2.97 16 23 C -0.08 -1.44 6.67 30.59 0.20 -1.24 16 24 H 0.15 2.18 8.03 -2.38 -0.02 2.16 16 25 Cl -0.16 -3.48 27.40 -2.72 -0.07 -3.56 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.06 0.99 6.12 -2.39 -0.01 0.97 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.04 0.75 7.87 -2.39 -0.02 0.73 16 31 H 0.34 10.42 8.72 -89.69 -0.78 9.64 16 32 H 0.08 2.20 8.08 -2.39 -0.02 2.18 16 33 H 0.03 0.93 8.08 -2.39 -0.02 0.92 16 34 H 0.10 4.19 8.06 -2.91 -0.02 4.17 16 35 H 0.10 5.48 6.17 -2.91 -0.02 5.47 16 36 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 37 H 0.09 4.49 8.06 -2.91 -0.02 4.47 16 38 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -59.67 333.10 2.19 -57.48 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: 0.27 Total: 31.28 kcal Atomic # 6 Polarization: -62.07 SS G_CDS: 3.09 Total: -58.98 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: -3.12 Total: -67.26 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Atomic # 17 Polarization: -3.48 SS G_CDS: -0.07 Total: -3.56 kcal Total: -59.67 2.19 -57.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895090060.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.927 kcal (2) G-P(sol) polarization free energy of solvation -59.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds