Wall clock time and date at job start Tue Mar 31 2020 01:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 115.54989 * 2 1 4 4 C 1.52997 * 117.51838 * 214.29175 * 2 1 3 5 5 H 1.08995 * 117.49950 * 0.02562 * 4 2 1 6 6 Cl 1.80304 * 117.49736 * 145.03046 * 4 2 1 7 7 C 1.52999 * 60.00410 * 252.52109 * 4 2 1 8 8 H 1.08999 * 117.51686 * 107.47949 * 7 4 2 9 9 C 1.53001 * 117.49824 * 252.51391 * 7 4 2 10 10 N 1.46904 * 109.46887 * 243.61676 * 9 7 4 11 11 C 1.46896 * 110.99969 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47145 * 179.97438 * 11 10 9 13 13 C 1.38635 * 119.75304 * 269.73101 * 12 11 10 14 14 C 1.37618 * 120.24918 * 179.72276 * 13 12 11 15 15 C 1.40717 * 119.74561 * 0.56729 * 14 13 12 16 16 C 1.41389 * 120.24456 * 179.68386 * 15 14 13 17 17 H 1.08003 * 120.00249 * 155.31391 * 16 15 14 18 18 C 1.39945 * 120.00089 * 335.31188 * 16 15 14 19 19 N 1.30826 * 120.00123 * 342.23101 * 18 16 15 20 20 Si 1.86797 * 120.00198 * 162.23238 * 18 16 15 21 21 H 1.48502 * 109.47221 * 94.66451 * 20 18 16 22 22 H 1.48500 * 109.47501 * 214.66280 * 20 18 16 23 23 H 1.48503 * 109.47260 * 334.66549 * 20 18 16 24 24 C 1.40715 * 119.51018 * 359.70624 * 15 14 13 25 25 C 1.37619 * 119.74579 * 359.97438 * 24 15 14 26 26 H 1.08994 * 109.47285 * 274.33340 * 1 2 3 27 27 H 1.08996 * 109.46900 * 34.33424 * 1 2 3 28 28 H 1.09006 * 109.46721 * 154.33290 * 1 2 3 29 29 H 1.08999 * 109.46896 * 123.62116 * 9 7 4 30 30 H 1.08995 * 109.47060 * 3.61975 * 9 7 4 31 31 H 1.00899 * 111.00096 * 303.95957 * 10 9 7 32 32 H 1.08995 * 109.47221 * 300.00319 * 11 10 9 33 33 H 1.09002 * 109.47153 * 60.00434 * 11 10 9 34 34 H 1.08003 * 119.87095 * 359.97378 * 13 12 11 35 35 H 1.07999 * 120.12638 * 180.27655 * 14 13 12 36 36 H 0.96996 * 120.00207 * 180.02562 * 19 18 16 37 37 H 1.07995 * 120.12733 * 180.02562 * 24 15 14 38 38 H 1.08003 * 119.87646 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1210 -0.7645 5 1 1.6120 -1.8586 -1.2680 6 17 3.7839 -0.7142 -1.5966 7 6 2.2364 -1.1207 0.7655 8 1 1.6112 -1.8580 1.2691 9 6 3.5487 -0.7752 1.4723 10 7 4.0094 -1.9368 2.2446 11 6 5.2697 -1.6410 2.9389 12 6 5.7098 -2.8528 3.7192 13 6 5.2970 -3.0123 5.0330 14 6 5.6881 -4.1178 5.7532 15 6 6.5199 -5.0824 5.1550 16 6 6.9335 -6.2189 5.8874 17 1 7.2130 -7.1237 5.3681 18 6 6.9808 -6.1714 7.2852 19 7 6.9871 -5.0170 7.9007 20 14 7.0350 -7.7563 8.2723 21 1 8.4464 -8.0982 8.5827 22 1 6.2793 -7.5774 9.5381 23 1 6.4225 -8.8536 7.4810 24 6 6.9374 -4.9072 3.8227 25 6 6.5286 -3.7972 3.1194 26 1 -0.3633 0.0776 1.0247 27 1 -0.3633 0.8486 -0.5796 28 1 -0.3633 -0.9263 -0.4452 29 1 3.3883 0.0677 2.1445 30 1 4.3020 -0.5101 0.7305 31 1 3.3015 -2.2422 2.8954 32 1 6.0352 -1.3816 2.2076 33 1 5.1209 -0.8043 3.6215 34 1 4.6627 -2.2681 5.4917 35 1 5.3617 -4.2423 6.7752 36 1 7.0203 -4.9841 8.8696 37 1 7.5755 -5.6414 3.3536 38 1 6.8481 -3.6604 2.0968 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895090062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:18 Heat of formation + Delta-G solvation = 20.993970 kcal Electronic energy + Delta-G solvation = -18318.925729 eV Core-core repulsion = 15379.782346 eV Total energy + Delta-G solvation = -2939.143383 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -38.67798 -37.65842 -35.72021 -35.11458 -33.47492 -30.52295 -29.25023 -28.89028 -26.87510 -24.71864 -22.71225 -21.19571 -20.96628 -20.67467 -19.70728 -17.26379 -16.05401 -15.70397 -15.21165 -14.88056 -14.31711 -14.00492 -13.79863 -13.47123 -13.32777 -12.94350 -12.76065 -12.40569 -12.25262 -11.90818 -11.79551 -11.65343 -11.52977 -11.39507 -10.99005 -10.94636 -10.71265 -10.50972 -10.37553 -9.98685 -9.82226 -9.52627 -9.36512 -9.10307 -8.02885 -7.41666 -7.26418 -6.74711 -4.32592 2.04021 2.75678 3.07444 3.10863 3.12535 3.19148 3.30211 3.94311 4.16840 4.31918 4.59678 4.60768 4.91405 5.03050 5.25740 5.35218 5.40260 5.44490 5.63043 5.67415 5.74389 5.83905 5.90625 5.98445 6.12448 6.32840 6.41669 6.46369 6.97561 7.09836 7.30480 7.39672 7.42125 7.64695 7.75770 7.92707 8.08402 8.17677 8.33592 8.66705 8.92271 9.00847 10.20005 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033758 B = 0.002915 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.230795 B = 9602.692066 C = 9911.542716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.145 4.145 3 H 0.114 0.886 4 C -0.070 4.070 5 H 0.135 0.865 6 Cl -0.141 7.141 7 C -0.126 4.126 8 H 0.119 0.881 9 C 0.077 3.923 10 N -0.679 5.679 11 C 0.126 3.874 12 C -0.213 4.213 13 C -0.095 4.095 14 C -0.166 4.166 15 C 0.112 3.888 16 C -0.463 4.463 17 H 0.077 0.923 18 C 0.076 3.924 19 N -0.794 5.794 20 Si 0.906 3.094 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.260 1.260 24 C -0.228 4.228 25 C -0.068 4.068 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.030 0.970 30 H 0.084 0.916 31 H 0.338 0.662 32 H 0.061 0.939 33 H 0.019 0.981 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.279 0.721 37 H 0.091 0.909 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.621 8.721 -10.815 17.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.164 4.164 3 H 0.132 0.868 4 C -0.113 4.113 5 H 0.153 0.847 6 Cl -0.114 7.114 7 C -0.144 4.144 8 H 0.137 0.863 9 C -0.052 4.052 10 N -0.311 5.311 11 C -0.002 4.002 12 C -0.215 4.215 13 C -0.114 4.114 14 C -0.186 4.186 15 C 0.110 3.890 16 C -0.493 4.493 17 H 0.095 0.905 18 C -0.141 4.141 19 N -0.420 5.420 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.248 4.248 25 C -0.087 4.087 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.102 0.898 31 H 0.156 0.844 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.100 0.900 35 H 0.134 0.866 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.158 8.572 -11.184 17.371 hybrid contribution -0.114 -0.085 1.183 1.191 sum -10.272 8.487 -10.002 16.661 Atomic orbital electron populations 1.21387 0.91849 1.02324 1.02452 1.22939 0.95749 0.95229 1.02515 0.86845 1.25256 0.88963 1.03037 0.94043 0.84695 1.98693 1.37754 1.94611 1.80297 1.22879 0.99135 1.00662 0.91763 0.86293 1.21655 0.94118 0.92300 0.97154 1.60618 1.06452 1.33249 1.30736 1.20532 0.90387 0.94789 0.94490 1.18882 1.08726 0.99103 0.94765 1.20515 0.99717 0.97452 0.93729 1.21259 1.01176 0.95904 1.00212 1.17623 0.88369 0.92042 0.90980 1.19594 1.39756 0.99040 0.90883 0.90501 1.25908 0.92296 0.97378 0.98558 1.69833 1.35459 1.26023 1.10662 0.86340 0.79047 0.82466 0.79105 1.19609 1.20083 1.18424 1.20982 1.07163 0.99582 0.97042 1.20343 0.97103 0.94266 0.96940 0.91483 0.91793 0.92198 0.95190 0.89814 0.84363 0.92024 0.96319 0.89964 0.86623 0.90965 0.89121 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.19 37.16 0.38 -0.43 16 2 C -0.15 -1.23 5.97 -90.62 -0.54 -1.78 16 3 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.07 -0.69 6.67 -26.73 -0.18 -0.86 16 5 H 0.14 1.15 8.05 -51.93 -0.42 0.73 16 6 Cl -0.14 -1.66 27.37 -51.86 -1.42 -3.08 16 7 C -0.13 -1.31 5.67 -90.62 -0.51 -1.83 16 8 H 0.12 1.21 8.13 -51.93 -0.42 0.79 16 9 C 0.08 0.99 5.88 -3.82 -0.02 0.96 16 10 N -0.68 -10.68 6.49 -115.06 -0.75 -11.43 16 11 C 0.13 2.24 5.80 -4.98 -0.03 2.21 16 12 C -0.21 -4.64 5.41 -104.33 -0.56 -5.20 16 13 C -0.10 -2.20 9.67 -39.66 -0.38 -2.59 16 14 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 15 C 0.11 3.03 5.57 -106.83 -0.60 2.43 16 16 C -0.46 -12.42 9.05 -37.74 -0.34 -12.76 16 17 H 0.08 1.99 7.91 -52.48 -0.41 1.57 16 18 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 19 N -0.79 -20.64 10.97 55.55 0.61 -20.03 16 20 Si 0.91 18.73 29.59 -169.99 -5.03 13.70 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 24 C -0.23 -5.72 9.80 -38.87 -0.38 -6.10 16 25 C -0.07 -1.55 9.67 -39.66 -0.38 -1.94 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 1.14 6.06 -51.93 -0.31 0.82 16 31 H 0.34 5.23 8.71 -39.29 -0.34 4.88 16 32 H 0.06 1.08 8.08 -51.93 -0.42 0.67 16 33 H 0.02 0.32 8.08 -51.93 -0.42 -0.10 16 34 H 0.08 1.72 8.06 -52.48 -0.42 1.29 16 35 H 0.12 3.11 6.18 -52.49 -0.32 2.78 16 36 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 37 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 38 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 LS Contribution 333.06 15.07 5.02 5.02 Total: -1.00 -27.38 333.06 -11.13 -38.51 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.58 Total: 8.01 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: -3.98 Total: -30.70 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: -0.14 Total: -31.46 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -1.42 Total: -3.08 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.38 -11.13 -38.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895090062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.501 kcal (2) G-P(sol) polarization free energy of solvation -27.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds