Wall clock time and date at job start Tue Mar 31 2020 01:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 115.54989 * 2 1 4 4 C 1.52997 * 117.51838 * 214.29175 * 2 1 3 5 5 H 1.08995 * 117.49950 * 0.02562 * 4 2 1 6 6 Cl 1.80304 * 117.49736 * 145.03046 * 4 2 1 7 7 C 1.52999 * 60.00410 * 252.52109 * 4 2 1 8 8 H 1.08999 * 117.51686 * 107.47949 * 7 4 2 9 9 C 1.53001 * 117.49824 * 252.51391 * 7 4 2 10 10 N 1.46904 * 109.46887 * 243.61676 * 9 7 4 11 11 C 1.46896 * 110.99969 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47145 * 179.97438 * 11 10 9 13 13 C 1.38635 * 119.75304 * 269.73101 * 12 11 10 14 14 C 1.37618 * 120.24918 * 179.72276 * 13 12 11 15 15 C 1.40717 * 119.74561 * 0.56729 * 14 13 12 16 16 C 1.41389 * 120.24456 * 179.68386 * 15 14 13 17 17 H 1.08003 * 120.00249 * 155.31391 * 16 15 14 18 18 C 1.39945 * 120.00089 * 335.31188 * 16 15 14 19 19 N 1.30826 * 120.00123 * 342.23101 * 18 16 15 20 20 Si 1.86797 * 120.00198 * 162.23238 * 18 16 15 21 21 H 1.48502 * 109.47221 * 94.66451 * 20 18 16 22 22 H 1.48500 * 109.47501 * 214.66280 * 20 18 16 23 23 H 1.48503 * 109.47260 * 334.66549 * 20 18 16 24 24 C 1.40715 * 119.51018 * 359.70624 * 15 14 13 25 25 C 1.37619 * 119.74579 * 359.97438 * 24 15 14 26 26 H 1.08994 * 109.47285 * 274.33340 * 1 2 3 27 27 H 1.08996 * 109.46900 * 34.33424 * 1 2 3 28 28 H 1.09006 * 109.46721 * 154.33290 * 1 2 3 29 29 H 1.08999 * 109.46896 * 123.62116 * 9 7 4 30 30 H 1.08995 * 109.47060 * 3.61975 * 9 7 4 31 31 H 1.00899 * 111.00096 * 303.95957 * 10 9 7 32 32 H 1.08995 * 109.47221 * 300.00319 * 11 10 9 33 33 H 1.09002 * 109.47153 * 60.00434 * 11 10 9 34 34 H 1.08003 * 119.87095 * 359.97378 * 13 12 11 35 35 H 1.07999 * 120.12638 * 180.27655 * 14 13 12 36 36 H 0.96996 * 120.00207 * 180.02562 * 19 18 16 37 37 H 1.07995 * 120.12733 * 180.02562 * 24 15 14 38 38 H 1.08003 * 119.87646 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1210 -0.7645 5 1 1.6120 -1.8586 -1.2680 6 17 3.7839 -0.7142 -1.5966 7 6 2.2364 -1.1207 0.7655 8 1 1.6112 -1.8580 1.2691 9 6 3.5487 -0.7752 1.4723 10 7 4.0094 -1.9368 2.2446 11 6 5.2697 -1.6410 2.9389 12 6 5.7098 -2.8528 3.7192 13 6 5.2970 -3.0123 5.0330 14 6 5.6881 -4.1178 5.7532 15 6 6.5199 -5.0824 5.1550 16 6 6.9335 -6.2189 5.8874 17 1 7.2130 -7.1237 5.3681 18 6 6.9808 -6.1714 7.2852 19 7 6.9871 -5.0170 7.9007 20 14 7.0350 -7.7563 8.2723 21 1 8.4464 -8.0982 8.5827 22 1 6.2793 -7.5774 9.5381 23 1 6.4225 -8.8536 7.4810 24 6 6.9374 -4.9072 3.8227 25 6 6.5286 -3.7972 3.1194 26 1 -0.3633 0.0776 1.0247 27 1 -0.3633 0.8486 -0.5796 28 1 -0.3633 -0.9263 -0.4452 29 1 3.3883 0.0677 2.1445 30 1 4.3020 -0.5101 0.7305 31 1 3.3015 -2.2422 2.8954 32 1 6.0352 -1.3816 2.2076 33 1 5.1209 -0.8043 3.6215 34 1 4.6627 -2.2681 5.4917 35 1 5.3617 -4.2423 6.7752 36 1 7.0203 -4.9841 8.8696 37 1 7.5755 -5.6414 3.3536 38 1 6.8481 -3.6604 2.0968 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895090062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:18 Heat of formation + Delta-G solvation = 7.636280 kcal Electronic energy + Delta-G solvation = -18319.504962 eV Core-core repulsion = 15379.782346 eV Total energy + Delta-G solvation = -2939.722616 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -39.73127 -39.24292 -36.81631 -36.29281 -35.20551 -32.15473 -31.12978 -29.86209 -28.28275 -26.13999 -24.20002 -22.87311 -21.97537 -21.77671 -21.18178 -19.20223 -17.35955 -16.89526 -16.61267 -15.98085 -15.85531 -15.55652 -15.21641 -14.94066 -14.40193 -14.00402 -13.88460 -13.77580 -13.62381 -13.32983 -13.14159 -12.93200 -12.70202 -12.61913 -12.51531 -12.35453 -12.27426 -12.03522 -11.59086 -11.37491 -11.25148 -10.98905 -10.76993 -10.59609 -9.39431 -9.25842 -9.12556 -8.62952 -6.31860 0.95683 1.17676 1.25152 1.38238 1.48773 1.54685 2.21585 2.52683 2.71271 3.27520 3.55833 3.75825 3.85624 3.97258 4.28549 4.30547 4.36123 4.45852 4.55805 4.58637 4.69170 4.72574 4.75434 4.84633 4.93234 5.05931 5.06843 5.17872 5.19143 5.38815 5.39455 5.49601 5.73197 5.96573 6.12085 6.18452 6.26999 6.41867 6.55563 6.72264 6.96155 7.06103 8.34328 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033758 B = 0.002915 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.230795 B = 9602.692066 C = 9911.542716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.125 4.125 3 H 0.114 0.886 4 C -0.074 4.074 5 H 0.150 0.850 6 Cl -0.161 7.161 7 C -0.137 4.137 8 H 0.123 0.877 9 C 0.081 3.919 10 N -0.686 5.686 11 C 0.133 3.867 12 C -0.199 4.199 13 C -0.096 4.096 14 C -0.189 4.189 15 C 0.079 3.921 16 C -0.503 4.503 17 H 0.072 0.928 18 C 0.035 3.965 19 N -0.826 5.826 20 Si 0.981 3.019 21 H -0.263 1.263 22 H -0.265 1.265 23 H -0.260 1.260 24 C -0.245 4.245 25 C -0.073 4.073 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.340 0.660 32 H 0.066 0.934 33 H 0.030 0.970 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.288 0.712 37 H 0.092 0.908 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.977 9.483 -11.365 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.144 4.144 3 H 0.132 0.868 4 C -0.118 4.118 5 H 0.167 0.833 6 Cl -0.134 7.134 7 C -0.156 4.156 8 H 0.141 0.859 9 C -0.048 4.048 10 N -0.318 5.318 11 C 0.005 3.995 12 C -0.201 4.201 13 C -0.115 4.115 14 C -0.208 4.208 15 C 0.077 3.923 16 C -0.533 4.533 17 H 0.090 0.910 18 C -0.179 4.179 19 N -0.452 5.452 20 Si 0.802 3.198 21 H -0.188 1.188 22 H -0.189 1.189 23 H -0.184 1.184 24 C -0.265 4.265 25 C -0.092 4.092 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.159 0.841 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.520 9.352 -11.754 18.930 hybrid contribution 0.261 -0.190 1.244 1.285 sum -11.259 9.162 -10.509 17.921 Atomic orbital electron populations 1.21423 0.90135 1.03222 1.03083 1.22999 0.96863 0.94505 1.00024 0.86780 1.25497 0.88346 1.04379 0.93543 0.83293 1.98692 1.39274 1.94737 1.80687 1.22813 0.98521 1.02276 0.91952 0.85872 1.21631 0.95051 0.91366 0.96762 1.60508 1.05820 1.34909 1.30529 1.20410 0.91652 0.92944 0.94515 1.19305 1.06677 0.99658 0.94433 1.20770 0.99548 0.96954 0.94238 1.21240 1.02291 0.97302 0.99980 1.17965 0.89374 0.92884 0.92069 1.19825 1.41972 0.99218 0.92264 0.90952 1.26746 0.91275 1.00903 0.98995 1.69878 1.35936 1.28049 1.11381 0.85214 0.79379 0.77728 0.77503 1.18762 1.18893 1.18358 1.21168 1.07733 1.00688 0.96888 1.20627 0.96975 0.93724 0.97835 0.90993 0.90662 0.91562 0.94412 0.90553 0.84146 0.91546 0.95203 0.87636 0.88254 0.90178 0.88932 0.87350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 10.19 71.98 0.73 -0.50 16 2 C -0.12 -1.79 5.97 -10.79 -0.06 -1.86 16 3 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 4 C -0.07 -1.31 6.67 30.59 0.20 -1.10 16 5 H 0.15 2.17 8.05 -2.39 -0.02 2.15 16 6 Cl -0.16 -3.57 27.37 -2.72 -0.07 -3.64 16 7 C -0.14 -2.55 5.67 -10.79 -0.06 -2.61 16 8 H 0.12 2.21 8.13 -2.39 -0.02 2.19 16 9 C 0.08 1.89 5.88 86.30 0.51 2.39 16 10 N -0.69 -20.15 6.49 -517.95 -3.36 -23.51 16 11 C 0.13 4.45 5.80 85.56 0.50 4.95 16 12 C -0.20 -8.44 5.41 -19.67 -0.11 -8.55 16 13 C -0.10 -4.42 9.67 22.22 0.21 -4.20 16 14 C -0.19 -10.06 8.70 22.73 0.20 -9.86 16 15 C 0.08 4.41 5.57 -21.29 -0.12 4.30 16 16 C -0.50 -27.96 9.05 23.46 0.21 -27.75 16 17 H 0.07 3.90 7.91 -2.91 -0.02 3.88 16 18 C 0.04 1.82 5.14 85.26 0.44 2.26 16 19 N -0.83 -43.92 10.97 21.83 0.24 -43.68 16 20 Si 0.98 38.84 29.59 68.60 2.03 40.87 16 21 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 22 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 23 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 24 C -0.25 -12.54 9.80 22.73 0.22 -12.31 16 25 C -0.07 -3.31 9.67 22.22 0.21 -3.09 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.61 7.90 -2.38 -0.02 0.59 16 29 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 30 H 0.08 1.93 6.06 -2.39 -0.01 1.91 16 31 H 0.34 9.82 8.71 -89.69 -0.78 9.04 16 32 H 0.07 2.18 8.08 -2.39 -0.02 2.16 16 33 H 0.03 0.94 8.08 -2.39 -0.02 0.92 16 34 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 35 H 0.10 5.54 6.18 -2.91 -0.02 5.52 16 36 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 37 H 0.09 4.54 8.06 -2.91 -0.02 4.51 16 38 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -59.78 333.06 2.19 -57.58 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.27 Total: 30.31 kcal Atomic # 6 Polarization: -61.03 SS G_CDS: 3.09 Total: -57.94 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: -3.12 Total: -67.19 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Atomic # 17 Polarization: -3.57 SS G_CDS: -0.07 Total: -3.64 kcal Total: -59.78 2.19 -57.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895090062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.219 kcal (2) G-P(sol) polarization free energy of solvation -59.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds