Wall clock time and date at job start Tue Mar 31 2020 01:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 115.56684 * 2 1 4 4 C 1.53079 * 117.51280 * 214.29377 * 2 1 3 5 5 H 1.08996 * 117.51374 * 0.02562 * 4 2 1 6 6 Cl 1.80304 * 117.51283 * 145.04872 * 4 2 1 7 7 C 1.52999 * 59.98296 * 252.52355 * 4 2 1 8 8 H 1.09007 * 117.49830 * 252.49523 * 7 4 2 9 9 C 1.53001 * 117.49736 * 107.50450 * 7 4 2 10 10 N 1.46898 * 109.47408 * 116.25140 * 9 7 4 11 11 C 1.46897 * 111.00233 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47338 * 179.97438 * 11 10 9 13 13 C 1.38630 * 119.75134 * 269.73322 * 12 11 10 14 14 C 1.37627 * 120.25001 * 179.72253 * 13 12 11 15 15 C 1.40712 * 119.73956 * 0.56819 * 14 13 12 16 16 C 1.41392 * 120.24231 * 179.68457 * 15 14 13 17 17 H 1.08003 * 120.00290 * 204.40716 * 16 15 14 18 18 C 1.39943 * 120.00297 * 24.40764 * 16 15 14 19 19 N 1.30827 * 119.99797 * 17.84532 * 18 16 15 20 20 Si 1.86797 * 120.00351 * 197.85115 * 18 16 15 21 21 H 1.48499 * 109.47361 * 89.99460 * 20 18 16 22 22 H 1.48501 * 109.46916 * 209.99960 * 20 18 16 23 23 H 1.48498 * 109.46991 * 329.99307 * 20 18 16 24 24 C 1.40717 * 119.51385 * 359.70522 * 15 14 13 25 25 C 1.37620 * 119.74518 * 359.97438 * 24 15 14 26 26 H 1.08993 * 109.47104 * 274.31260 * 1 2 3 27 27 H 1.09000 * 109.46689 * 34.31325 * 1 2 3 28 28 H 1.08999 * 109.46783 * 154.31104 * 1 2 3 29 29 H 1.09008 * 109.46946 * 236.25299 * 9 7 4 30 30 H 1.09000 * 109.46953 * 356.24714 * 9 7 4 31 31 H 1.00905 * 110.99756 * 56.04471 * 10 9 7 32 32 H 1.08999 * 109.47490 * 300.00756 * 11 10 9 33 33 H 1.09002 * 109.46625 * 60.00400 * 11 10 9 34 34 H 1.08006 * 119.87825 * 359.97438 * 13 12 11 35 35 H 1.08000 * 120.12596 * 180.28068 * 14 13 12 36 36 H 0.97005 * 120.00053 * 180.02562 * 19 18 16 37 37 H 1.07996 * 120.12778 * 180.02562 * 24 15 14 38 38 H 1.08001 * 119.87668 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2371 -1.1217 -0.7650 5 1 1.6124 -1.8593 -1.2685 6 17 3.7844 -0.7156 -1.5969 7 6 2.2364 -1.1210 0.7650 8 1 3.1714 -0.8751 1.2687 9 6 1.3588 -2.1562 1.4715 10 7 2.2082 -3.0744 2.2418 11 6 1.3978 -4.0841 2.9357 12 6 2.3016 -5.0062 3.7129 13 6 2.7933 -6.1548 3.1123 14 6 3.6240 -7.0012 3.8107 15 6 3.9641 -6.7030 5.1431 16 6 4.8114 -7.5685 5.8726 17 1 4.7675 -7.5842 6.9516 18 6 5.7068 -8.4049 5.1966 19 7 6.0198 -8.1572 3.9507 20 14 6.4551 -9.8750 6.0730 21 1 5.5854 -11.0628 5.8783 22 1 7.8029 -10.1512 5.5139 23 1 6.5721 -9.5796 7.5236 24 6 3.4545 -5.5372 5.7443 25 6 2.6309 -4.7019 5.0247 26 1 -0.3633 0.0773 1.0247 27 1 -0.3633 0.8488 -0.5793 28 1 -0.3633 -0.9261 -0.4455 29 1 0.6685 -1.6482 2.1451 30 1 0.7935 -2.7201 0.7296 31 1 2.7901 -2.5685 2.8927 32 1 0.7081 -3.5894 3.6195 33 1 0.8325 -4.6616 2.2042 34 1 2.5267 -6.3844 2.0911 35 1 4.0095 -7.8932 3.3393 36 1 6.6402 -8.7372 3.4819 37 1 3.7095 -5.2985 6.7662 38 1 2.2382 -3.8069 5.4842 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895090063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:22 Heat of formation + Delta-G solvation = 19.797502 kcal Electronic energy + Delta-G solvation = -18337.022309 eV Core-core repulsion = 15397.827043 eV Total energy + Delta-G solvation = -2939.195266 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.75878 -37.67453 -35.81905 -35.02962 -33.45199 -30.39989 -29.25258 -28.76009 -27.12155 -24.84445 -22.73578 -21.74205 -20.94047 -20.12072 -19.50735 -17.27948 -16.35238 -15.63051 -15.32449 -14.80546 -14.25542 -14.08646 -13.75815 -13.51996 -13.18629 -12.96797 -12.72694 -12.36821 -12.17582 -12.09254 -11.91298 -11.61923 -11.50675 -11.24385 -11.10078 -11.06216 -10.89786 -10.50060 -10.37980 -9.97214 -9.76449 -9.55789 -9.34896 -9.11820 -8.06623 -7.42508 -7.29322 -6.74229 -4.33713 2.05209 2.75275 3.07721 3.09764 3.11459 3.18143 3.31934 3.94089 4.21133 4.33583 4.50228 4.62184 4.94088 5.00505 5.22093 5.33531 5.41006 5.46414 5.56521 5.69810 5.72910 5.85421 5.86931 5.91973 6.05764 6.24519 6.36102 6.45874 6.97551 7.08833 7.30948 7.36866 7.38907 7.62956 7.69780 7.90341 8.07521 8.16410 8.32015 8.66637 8.91260 8.99801 10.19979 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025458 B = 0.003085 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.579081 B = 9073.727942 C = 9844.960043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 H 0.114 0.886 4 C -0.066 4.066 5 H 0.136 0.864 6 Cl -0.150 7.150 7 C -0.126 4.126 8 H 0.119 0.881 9 C 0.088 3.912 10 N -0.682 5.682 11 C 0.126 3.874 12 C -0.215 4.215 13 C -0.078 4.078 14 C -0.168 4.168 15 C 0.113 3.887 16 C -0.464 4.464 17 H 0.077 0.923 18 C 0.076 3.924 19 N -0.790 5.790 20 Si 0.907 3.093 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.228 4.228 25 C -0.085 4.085 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.342 0.658 32 H 0.018 0.982 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.280 0.720 37 H 0.090 0.910 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.374 11.872 -7.300 16.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 H 0.132 0.868 4 C -0.110 4.110 5 H 0.154 0.846 6 Cl -0.122 7.122 7 C -0.144 4.144 8 H 0.137 0.863 9 C -0.042 4.042 10 N -0.313 5.313 11 C -0.002 4.002 12 C -0.217 4.217 13 C -0.097 4.097 14 C -0.187 4.187 15 C 0.110 3.890 16 C -0.493 4.493 17 H 0.095 0.905 18 C -0.142 4.142 19 N -0.415 5.415 20 Si 0.732 3.268 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.248 4.248 25 C -0.104 4.104 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.160 0.840 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.135 0.865 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.971 11.410 -8.104 16.106 hybrid contribution 0.305 -0.085 0.899 0.953 sum -7.666 11.325 -7.205 15.458 Atomic orbital electron populations 1.21373 0.91953 1.02365 1.02445 1.22964 0.95927 0.95025 1.02323 0.86788 1.25314 0.88793 1.03078 0.93793 0.84623 1.98703 1.37785 1.94617 1.81144 1.22921 1.01608 0.98139 0.91782 0.86339 1.21501 0.93708 0.92164 0.96825 1.60618 1.23287 1.16292 1.31148 1.20547 0.93198 0.91907 0.94506 1.18875 1.08817 0.99222 0.94767 1.20499 0.97411 0.94614 0.97194 1.21317 1.00477 1.00738 0.96162 1.17625 0.89384 0.89918 0.92065 1.19606 1.16934 1.18090 0.94684 0.90509 1.25914 0.95569 0.97953 0.94792 1.69839 1.26432 1.34279 1.10967 0.86327 0.78400 0.81458 0.80615 1.19288 1.20326 1.18661 1.20924 1.06745 0.97493 0.99593 1.20346 0.98405 0.97629 0.93989 0.91452 0.91825 0.92101 0.94754 0.91073 0.84011 0.96370 0.92030 0.89501 0.86522 0.90861 0.89188 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.20 37.16 0.34 -0.54 16 2 C -0.14 -1.25 6.25 -90.58 -0.57 -1.81 16 3 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.07 -0.69 6.32 -26.69 -0.17 -0.86 16 5 H 0.14 1.31 7.94 -51.93 -0.41 0.89 16 6 Cl -0.15 -1.79 29.40 -51.86 -1.52 -3.32 16 7 C -0.13 -1.35 5.79 -90.62 -0.52 -1.88 16 8 H 0.12 1.39 8.13 -51.93 -0.42 0.97 16 9 C 0.09 1.03 5.05 -3.82 -0.02 1.01 16 10 N -0.68 -10.59 6.49 -115.06 -0.75 -11.34 16 11 C 0.13 2.15 5.80 -4.98 -0.03 2.12 16 12 C -0.22 -4.60 5.41 -104.33 -0.56 -5.17 16 13 C -0.08 -1.84 9.67 -39.66 -0.38 -2.22 16 14 C -0.17 -4.38 8.70 -38.87 -0.34 -4.72 16 15 C 0.11 3.02 5.57 -106.83 -0.60 2.42 16 16 C -0.46 -12.38 9.05 -37.74 -0.34 -12.72 16 17 H 0.08 1.97 7.91 -52.48 -0.41 1.56 16 18 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 19 N -0.79 -20.65 10.95 55.55 0.61 -20.04 16 20 Si 0.91 18.76 29.59 -169.99 -5.03 13.73 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 24 C -0.23 -5.59 9.80 -38.87 -0.38 -5.97 16 25 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 26 H 0.07 0.46 7.83 -51.93 -0.41 0.06 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 29 H 0.03 0.38 7.77 -51.92 -0.40 -0.03 16 30 H 0.07 0.82 7.88 -51.93 -0.41 0.41 16 31 H 0.34 5.34 8.71 -39.29 -0.34 5.00 16 32 H 0.02 0.29 8.08 -51.93 -0.42 -0.13 16 33 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 34 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 35 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 36 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 37 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 38 H 0.08 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 334.32 15.07 5.04 5.04 Total: -1.00 -27.29 334.32 -11.33 -38.63 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -5.63 Total: 8.06 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: -4.04 Total: -30.76 kcal Atomic # 7 Polarization: -31.24 SS G_CDS: -0.14 Total: -31.38 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -1.52 Total: -3.32 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.29 -11.33 -38.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895090063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.423 kcal (2) G-P(sol) polarization free energy of solvation -27.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds