Wall clock time and date at job start Tue Mar 31 2020 01:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 115.56684 * 2 1 4 4 C 1.53079 * 117.51280 * 214.29377 * 2 1 3 5 5 H 1.08996 * 117.51374 * 0.02562 * 4 2 1 6 6 Cl 1.80304 * 117.51283 * 145.04872 * 4 2 1 7 7 C 1.52999 * 59.98296 * 252.52355 * 4 2 1 8 8 H 1.09007 * 117.49830 * 252.49523 * 7 4 2 9 9 C 1.53001 * 117.49736 * 107.50450 * 7 4 2 10 10 N 1.46898 * 109.47408 * 116.25140 * 9 7 4 11 11 C 1.46897 * 111.00233 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47338 * 179.97438 * 11 10 9 13 13 C 1.38630 * 119.75134 * 269.73322 * 12 11 10 14 14 C 1.37627 * 120.25001 * 179.72253 * 13 12 11 15 15 C 1.40712 * 119.73956 * 0.56819 * 14 13 12 16 16 C 1.41392 * 120.24231 * 179.68457 * 15 14 13 17 17 H 1.08003 * 120.00290 * 204.40716 * 16 15 14 18 18 C 1.39943 * 120.00297 * 24.40764 * 16 15 14 19 19 N 1.30827 * 119.99797 * 17.84532 * 18 16 15 20 20 Si 1.86797 * 120.00351 * 197.85115 * 18 16 15 21 21 H 1.48499 * 109.47361 * 89.99460 * 20 18 16 22 22 H 1.48501 * 109.46916 * 209.99960 * 20 18 16 23 23 H 1.48498 * 109.46991 * 329.99307 * 20 18 16 24 24 C 1.40717 * 119.51385 * 359.70522 * 15 14 13 25 25 C 1.37620 * 119.74518 * 359.97438 * 24 15 14 26 26 H 1.08993 * 109.47104 * 274.31260 * 1 2 3 27 27 H 1.09000 * 109.46689 * 34.31325 * 1 2 3 28 28 H 1.08999 * 109.46783 * 154.31104 * 1 2 3 29 29 H 1.09008 * 109.46946 * 236.25299 * 9 7 4 30 30 H 1.09000 * 109.46953 * 356.24714 * 9 7 4 31 31 H 1.00905 * 110.99756 * 56.04471 * 10 9 7 32 32 H 1.08999 * 109.47490 * 300.00756 * 11 10 9 33 33 H 1.09002 * 109.46625 * 60.00400 * 11 10 9 34 34 H 1.08006 * 119.87825 * 359.97438 * 13 12 11 35 35 H 1.08000 * 120.12596 * 180.28068 * 14 13 12 36 36 H 0.97005 * 120.00053 * 180.02562 * 19 18 16 37 37 H 1.07996 * 120.12778 * 180.02562 * 24 15 14 38 38 H 1.08001 * 119.87668 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2371 -1.1217 -0.7650 5 1 1.6124 -1.8593 -1.2685 6 17 3.7844 -0.7156 -1.5969 7 6 2.2364 -1.1210 0.7650 8 1 3.1714 -0.8751 1.2687 9 6 1.3588 -2.1562 1.4715 10 7 2.2082 -3.0744 2.2418 11 6 1.3978 -4.0841 2.9357 12 6 2.3016 -5.0062 3.7129 13 6 2.7933 -6.1548 3.1123 14 6 3.6240 -7.0012 3.8107 15 6 3.9641 -6.7030 5.1431 16 6 4.8114 -7.5685 5.8726 17 1 4.7675 -7.5842 6.9516 18 6 5.7068 -8.4049 5.1966 19 7 6.0198 -8.1572 3.9507 20 14 6.4551 -9.8750 6.0730 21 1 5.5854 -11.0628 5.8783 22 1 7.8029 -10.1512 5.5139 23 1 6.5721 -9.5796 7.5236 24 6 3.4545 -5.5372 5.7443 25 6 2.6309 -4.7019 5.0247 26 1 -0.3633 0.0773 1.0247 27 1 -0.3633 0.8488 -0.5793 28 1 -0.3633 -0.9261 -0.4455 29 1 0.6685 -1.6482 2.1451 30 1 0.7935 -2.7201 0.7296 31 1 2.7901 -2.5685 2.8927 32 1 0.7081 -3.5894 3.6195 33 1 0.8325 -4.6616 2.2042 34 1 2.5267 -6.3844 2.0911 35 1 4.0095 -7.8932 3.3393 36 1 6.6402 -8.7372 3.4819 37 1 3.7095 -5.2985 6.7662 38 1 2.2382 -3.8069 5.4842 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895090063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:21 Heat of formation + Delta-G solvation = 6.389973 kcal Electronic energy + Delta-G solvation = -18337.603703 eV Core-core repulsion = 15397.827043 eV Total energy + Delta-G solvation = -2939.776660 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.76760 -39.28223 -36.88268 -36.26856 -35.14777 -32.06837 -31.11461 -29.57086 -28.51822 -26.29895 -24.20890 -22.82705 -22.53293 -21.66882 -20.50323 -19.20049 -17.24265 -17.14452 -16.82270 -15.96228 -15.67137 -15.54577 -15.21031 -14.90852 -14.39291 -13.96903 -13.85885 -13.77991 -13.57224 -13.32366 -13.08205 -12.91164 -12.84214 -12.67730 -12.58756 -12.30865 -12.06324 -12.04583 -11.89438 -11.41156 -11.21449 -11.00527 -10.76069 -10.55483 -9.32597 -9.31606 -9.09117 -8.61844 -6.31859 0.96806 1.17855 1.23077 1.37725 1.51128 1.51920 2.21150 2.52603 2.71417 3.30828 3.54632 3.74537 3.79676 3.97487 4.29944 4.32147 4.36165 4.40753 4.54664 4.61664 4.66377 4.70918 4.78203 4.86330 4.94266 5.09394 5.10255 5.15536 5.17758 5.37687 5.41369 5.49238 5.73737 5.96994 6.12396 6.19883 6.31655 6.41843 6.53639 6.73889 6.96461 7.07076 8.34746 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025458 B = 0.003085 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.579081 B = 9073.727942 C = 9844.960043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.119 4.119 3 H 0.119 0.881 4 C -0.075 4.075 5 H 0.144 0.856 6 Cl -0.169 7.169 7 C -0.137 4.137 8 H 0.106 0.894 9 C 0.094 3.906 10 N -0.698 5.698 11 C 0.133 3.867 12 C -0.200 4.200 13 C -0.087 4.087 14 C -0.193 4.193 15 C 0.078 3.922 16 C -0.503 4.503 17 H 0.074 0.926 18 C 0.034 3.966 19 N -0.826 5.826 20 Si 0.982 3.018 21 H -0.262 1.262 22 H -0.268 1.268 23 H -0.258 1.258 24 C -0.244 4.244 25 C -0.084 4.084 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.340 0.660 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.287 0.713 37 H 0.095 0.905 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.895 13.135 -7.525 18.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.138 4.138 3 H 0.137 0.863 4 C -0.118 4.118 5 H 0.162 0.838 6 Cl -0.142 7.142 7 C -0.156 4.156 8 H 0.124 0.876 9 C -0.035 4.035 10 N -0.329 5.329 11 C 0.005 3.995 12 C -0.202 4.202 13 C -0.106 4.106 14 C -0.212 4.212 15 C 0.076 3.924 16 C -0.533 4.533 17 H 0.092 0.908 18 C -0.181 4.181 19 N -0.452 5.452 20 Si 0.803 3.197 21 H -0.187 1.187 22 H -0.193 1.193 23 H -0.182 1.182 24 C -0.264 4.264 25 C -0.103 4.103 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.158 0.842 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.508 12.694 -8.336 17.917 hybrid contribution 0.659 -0.322 0.902 1.163 sum -8.849 12.372 -7.434 16.930 Atomic orbital electron populations 1.21426 0.90307 1.03211 1.03165 1.23037 0.96974 0.94381 0.99433 0.86314 1.25522 0.88250 1.04605 0.93432 0.83820 1.98701 1.39268 1.94725 1.81524 1.22826 1.01586 0.99342 0.91805 0.87619 1.21507 0.93467 0.91799 0.96707 1.60503 1.24078 1.17269 1.31091 1.20448 0.92472 0.91791 0.94766 1.19363 1.07349 0.98655 0.94820 1.20744 0.96986 0.95069 0.97774 1.21274 1.02192 1.01149 0.96595 1.17968 0.90480 0.91187 0.92748 1.19842 1.18514 1.20197 0.94750 0.90820 1.26765 0.95549 1.00288 0.95477 1.69900 1.27318 1.35527 1.12461 0.85209 0.77741 0.77421 0.79357 1.18677 1.19301 1.18188 1.21156 1.07500 0.97484 1.00210 1.20698 0.97330 0.98106 0.94133 0.90800 0.90528 0.91737 0.93069 0.90459 0.84205 0.94286 0.91235 0.88178 0.88555 0.90261 0.88719 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.20 71.98 0.66 -0.66 16 2 C -0.12 -1.75 6.25 -10.77 -0.07 -1.82 16 3 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 4 C -0.07 -1.41 6.32 30.62 0.19 -1.22 16 5 H 0.14 2.45 7.94 -2.39 -0.02 2.43 16 6 Cl -0.17 -3.91 29.40 -2.72 -0.08 -3.99 16 7 C -0.14 -2.65 5.79 -10.79 -0.06 -2.71 16 8 H 0.11 2.36 8.13 -2.38 -0.02 2.34 16 9 C 0.09 1.93 5.05 86.30 0.44 2.36 16 10 N -0.70 -19.92 6.49 -517.93 -3.36 -23.28 16 11 C 0.13 4.13 5.80 85.56 0.50 4.63 16 12 C -0.20 -8.25 5.41 -19.68 -0.11 -8.36 16 13 C -0.09 -4.08 9.67 22.22 0.21 -3.87 16 14 C -0.19 -10.43 8.70 22.73 0.20 -10.23 16 15 C 0.08 4.34 5.57 -21.29 -0.12 4.22 16 16 C -0.50 -27.93 9.05 23.46 0.21 -27.72 16 17 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16 18 C 0.03 1.75 5.14 85.26 0.44 2.19 16 19 N -0.83 -44.70 10.95 21.83 0.24 -44.46 16 20 Si 0.98 39.21 29.59 68.60 2.03 41.24 16 21 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 22 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 23 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 24 C -0.24 -12.08 9.80 22.73 0.22 -11.86 16 25 C -0.08 -3.57 9.67 22.22 0.21 -3.36 16 26 H 0.07 0.73 7.83 -2.39 -0.02 0.72 16 27 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.66 7.90 -2.39 -0.02 0.65 16 29 H 0.05 0.91 7.77 -2.38 -0.02 0.89 16 30 H 0.08 1.51 7.88 -2.39 -0.02 1.49 16 31 H 0.34 9.89 8.71 -89.69 -0.78 9.10 16 32 H 0.04 1.07 8.08 -2.39 -0.02 1.05 16 33 H 0.07 2.07 8.08 -2.39 -0.02 2.05 16 34 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 35 H 0.10 5.51 6.16 -2.91 -0.02 5.49 16 36 H 0.29 14.05 8.30 -92.70 -0.77 13.29 16 37 H 0.09 4.46 8.06 -2.91 -0.02 4.43 16 38 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -60.56 334.32 2.03 -58.53 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 0.27 Total: 30.36 kcal Atomic # 6 Polarization: -61.33 SS G_CDS: 2.93 Total: -58.39 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: -3.12 Total: -67.75 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Atomic # 17 Polarization: -3.91 SS G_CDS: -0.08 Total: -3.99 kcal Total: -60.56 2.03 -58.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895090063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.919 kcal (2) G-P(sol) polarization free energy of solvation -60.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds