Wall clock time and date at job start Tue Mar 31 2020 00:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33131 * 120.00141 * 2 1 4 4 F 1.35102 * 119.99591 * 352.69833 * 3 2 1 5 5 C 1.47261 * 120.00372 * 172.70221 * 3 2 1 6 6 O 1.21643 * 119.99691 * 354.00160 * 5 3 2 7 7 N 1.34780 * 120.00627 * 174.00778 * 5 3 2 8 8 C 1.40497 * 120.00202 * 180.02562 * 7 5 3 9 9 C 1.40673 * 126.08998 * 359.97438 * 8 7 5 10 10 N 1.30905 * 108.39143 * 179.74541 * 9 8 7 11 11 N 1.40073 * 108.40597 * 0.40577 * 10 9 8 12 12 C 1.37323 * 126.06023 * 179.85138 * 11 10 9 13 13 H 1.07999 * 119.99819 * 173.61815 * 12 11 10 14 14 C 1.38989 * 119.99820 * 353.89197 * 12 11 10 15 15 N 1.31291 * 120.00285 * 5.73128 * 14 12 11 16 16 Si 1.86805 * 119.99600 * 185.72676 * 14 12 11 17 17 H 1.48499 * 109.46661 * 94.97760 * 16 14 12 18 18 H 1.48494 * 109.46977 * 214.97636 * 16 14 12 19 19 H 1.48501 * 109.47081 * 334.97749 * 16 14 12 20 20 C 1.35701 * 126.08603 * 179.97438 * 8 7 5 21 21 C 1.50699 * 119.99682 * 179.97438 * 2 1 3 22 22 C 1.52999 * 117.50306 * 1.54082 * 21 2 1 23 23 C 1.52996 * 117.49893 * 292.87879 * 21 2 1 24 24 H 1.09004 * 109.47184 * 90.00245 * 1 2 3 25 25 H 1.09001 * 109.47587 * 210.00105 * 1 2 3 26 26 H 1.09000 * 109.47239 * 330.00387 * 1 2 3 27 27 H 0.97003 * 119.99430 * 359.97438 * 7 5 3 28 28 H 1.08005 * 125.80458 * 359.97438 * 9 8 7 29 29 H 0.97003 * 120.00020 * 179.97438 * 15 14 12 30 30 H 1.08003 * 126.25042 * 0.02562 * 20 8 7 31 31 H 1.08997 * 115.54480 * 147.21170 * 21 2 1 32 32 H 1.09005 * 117.49499 * 359.97438 * 22 21 2 33 33 H 1.08991 * 117.50209 * 145.02133 * 22 21 2 34 34 H 1.09000 * 117.49688 * 214.98200 * 23 21 2 35 35 H 1.08995 * 117.50333 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1727 1.1529 0.0000 4 9 1.5054 2.3182 -0.1487 5 6 3.6364 1.1582 0.1620 6 8 4.2251 0.1217 0.4046 7 7 4.3237 2.3112 0.0415 8 6 5.7202 2.3160 0.1956 9 6 6.5268 1.1982 0.4762 10 7 7.7729 1.5938 0.5411 11 7 7.8106 2.9756 0.3147 12 6 8.9358 3.7627 0.3046 13 1 8.8656 4.8016 0.0179 14 6 10.1660 3.2209 0.6580 15 7 10.2735 1.9335 0.8921 16 14 11.6665 4.3245 0.7996 17 1 11.8424 4.7416 2.2139 18 1 12.8711 3.5823 0.3489 19 1 11.4787 5.5269 -0.0515 20 6 6.5312 3.3999 0.1002 21 6 2.2604 -1.3051 0.0006 22 6 1.4388 -2.5953 -0.0353 23 6 2.1567 -2.1802 1.2513 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 3.8543 3.1377 -0.1522 28 1 6.1777 0.1850 0.6112 29 1 11.1322 1.5554 1.1384 30 1 6.2208 4.4134 -0.1072 31 1 3.2114 -1.2991 -0.5320 32 1 0.3532 -2.5000 -0.0589 33 1 1.8494 -3.4382 -0.5911 34 1 3.0393 -2.7502 1.5414 35 1 1.5432 -1.8121 2.0736 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900437429.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:56 Heat of formation + Delta-G solvation = 47.399469 kcal Electronic energy + Delta-G solvation = -21040.621054 eV Core-core repulsion = 17570.745980 eV Total energy + Delta-G solvation = -3469.875073 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.83599 -39.98957 -38.94150 -37.54163 -34.27731 -33.16066 -32.89818 -30.29073 -28.62193 -27.40098 -24.96287 -23.34461 -22.31602 -21.37325 -20.83841 -19.46005 -18.68773 -17.85301 -17.09387 -16.60508 -15.82941 -15.49338 -15.13570 -14.72130 -14.32472 -14.17031 -14.07275 -13.72837 -13.27004 -13.11192 -12.98689 -12.57729 -12.31293 -11.69142 -11.63742 -11.44959 -11.33018 -11.28854 -10.98319 -10.73919 -10.53680 -10.49161 -10.14440 -9.21835 -9.06475 -8.83396 -8.66620 -8.07905 -6.71632 -6.58011 -4.24550 1.16963 2.92299 3.04391 3.09971 3.19657 3.42076 3.70360 3.83923 3.94449 4.28573 4.42136 4.59025 4.74442 4.95526 4.99496 5.00579 5.09004 5.11884 5.37318 5.43065 5.59012 5.73900 5.88482 5.98085 6.13698 6.21487 6.29485 6.40930 6.54673 6.89134 6.93206 7.09209 7.20885 7.83924 8.12088 8.24152 8.56635 8.76463 9.35546 9.64245 10.38199 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037099 B = 0.003683 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.552767 B = 7600.541510 C = 8277.165152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.057 4.057 3 C -0.004 4.004 4 F -0.141 7.141 5 C 0.528 3.472 6 O -0.512 6.512 7 N -0.612 5.612 8 C -0.062 4.062 9 C -0.029 4.029 10 N -0.261 5.261 11 N -0.141 5.141 12 C -0.324 4.324 13 H 0.117 0.883 14 C 0.047 3.953 15 N -0.769 5.769 16 Si 0.935 3.065 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.264 1.264 20 C -0.081 4.081 21 C -0.105 4.105 22 C -0.188 4.188 23 C -0.154 4.154 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.401 0.599 28 H 0.177 0.823 29 H 0.275 0.725 30 H 0.147 0.853 31 H 0.139 0.861 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.605 -2.366 -1.604 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.060 4.060 3 C -0.026 4.026 4 F -0.120 7.120 5 C 0.314 3.686 6 O -0.390 6.390 7 N -0.253 5.253 8 C -0.168 4.168 9 C -0.205 4.205 10 N -0.092 5.092 11 N 0.091 4.909 12 C -0.456 4.456 13 H 0.134 0.866 14 C -0.170 4.170 15 N -0.395 5.395 16 Si 0.759 3.241 17 H -0.196 1.196 18 H -0.201 1.201 19 H -0.188 1.188 20 C -0.232 4.232 21 C -0.123 4.123 22 C -0.225 4.225 23 C -0.191 4.191 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.234 0.766 28 H 0.194 0.806 29 H 0.086 0.914 30 H 0.164 0.836 31 H 0.156 0.844 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.793 -3.570 -1.185 14.296 hybrid contribution -0.648 1.604 -0.203 1.742 sum -14.441 -1.966 -1.388 14.640 Atomic orbital electron populations 1.20876 0.90505 1.03417 1.03104 1.21780 0.95896 0.92797 0.95530 1.19491 0.90206 0.81553 1.11389 1.91437 1.80235 1.46821 1.93460 1.17959 0.85592 0.84479 0.80589 1.90694 1.68262 1.31140 1.48950 1.42395 1.05884 1.09623 1.67364 1.17255 0.81477 0.95312 1.22746 1.24112 0.90266 0.99030 1.07085 1.78252 1.16850 0.88936 1.25165 1.44558 1.03432 1.05209 1.37671 1.19904 0.83735 0.93757 1.48199 0.86552 1.25648 0.99680 0.96251 0.95459 1.70221 1.25673 1.10621 1.33002 0.85805 0.79594 0.79552 0.79165 1.19616 1.20083 1.18763 1.21281 0.85569 0.97644 1.18687 1.21195 1.00458 0.86695 1.03953 1.23149 0.98868 0.98398 1.02076 1.22847 1.02689 1.02394 0.91186 0.90228 0.90490 0.90936 0.76592 0.80621 0.91440 0.83591 0.84392 0.88768 0.88505 0.88181 0.89100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.24 36.01 0.33 -0.80 16 2 C -0.06 -0.72 5.81 -101.13 -0.59 -1.31 16 3 C 0.00 -0.06 7.34 -37.69 -0.28 -0.34 16 4 F -0.14 -1.92 15.92 2.25 0.04 -1.88 16 5 C 0.53 9.61 7.65 -12.59 -0.10 9.51 16 6 O -0.51 -10.43 10.48 5.24 0.05 -10.37 16 7 N -0.61 -11.50 5.46 -11.02 -0.06 -11.56 16 8 C -0.06 -1.45 6.90 -83.87 -0.58 -2.03 16 9 C -0.03 -0.77 10.85 -17.03 -0.18 -0.95 16 10 N -0.26 -7.58 10.42 30.81 0.32 -7.26 16 11 N -0.14 -3.89 3.74 -11.41 -0.04 -3.94 16 12 C -0.32 -8.58 10.24 -14.81 -0.15 -8.73 16 13 H 0.12 2.76 7.84 -52.49 -0.41 2.35 16 14 C 0.05 1.21 5.50 -17.50 -0.10 1.12 16 15 N -0.77 -21.43 11.84 55.49 0.66 -20.77 16 16 Si 0.94 18.89 29.56 -169.99 -5.02 13.87 16 17 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 18 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 19 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 20 C -0.08 -1.92 11.49 -16.39 -0.19 -2.11 16 21 C -0.11 -1.37 4.33 -91.77 -0.40 -1.77 16 22 C -0.19 -1.88 9.79 -26.69 -0.26 -2.14 16 23 C -0.15 -1.80 10.24 -26.70 -0.27 -2.08 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 0.60 6.37 -51.93 -0.33 0.27 16 26 H 0.07 0.65 7.66 -51.93 -0.40 0.26 16 27 H 0.40 6.25 8.39 -40.82 -0.34 5.90 16 28 H 0.18 4.48 5.91 -52.48 -0.31 4.17 16 29 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.15 2.91 8.06 -52.48 -0.42 2.49 16 31 H 0.14 2.15 6.27 -51.93 -0.33 1.83 16 32 H 0.09 0.78 6.31 -51.93 -0.33 0.45 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 305.78 15.07 4.61 4.61 Total: -1.00 -31.44 305.78 -5.90 -37.34 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -3.69 Total: 11.61 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -2.76 Total: -11.64 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.88 Total: -43.53 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.05 Total: -10.37 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.44 -5.90 -37.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900437429.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.741 kcal (2) G-P(sol) polarization free energy of solvation -31.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds