Wall clock time and date at job start Tue Mar 31 2020 00:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33131 * 120.00141 * 2 1 4 4 F 1.35102 * 119.99591 * 352.69833 * 3 2 1 5 5 C 1.47261 * 120.00372 * 172.70221 * 3 2 1 6 6 O 1.21643 * 119.99691 * 354.00160 * 5 3 2 7 7 N 1.34780 * 120.00627 * 174.00778 * 5 3 2 8 8 C 1.40497 * 120.00202 * 180.02562 * 7 5 3 9 9 C 1.40673 * 126.08998 * 359.97438 * 8 7 5 10 10 N 1.30905 * 108.39143 * 179.74541 * 9 8 7 11 11 N 1.40073 * 108.40597 * 0.40577 * 10 9 8 12 12 C 1.37323 * 126.06023 * 179.85138 * 11 10 9 13 13 H 1.07999 * 119.99819 * 173.61815 * 12 11 10 14 14 C 1.38989 * 119.99820 * 353.89197 * 12 11 10 15 15 N 1.31291 * 120.00285 * 5.73128 * 14 12 11 16 16 Si 1.86805 * 119.99600 * 185.72676 * 14 12 11 17 17 H 1.48499 * 109.46661 * 94.97760 * 16 14 12 18 18 H 1.48494 * 109.46977 * 214.97636 * 16 14 12 19 19 H 1.48501 * 109.47081 * 334.97749 * 16 14 12 20 20 C 1.35701 * 126.08603 * 179.97438 * 8 7 5 21 21 C 1.50699 * 119.99682 * 179.97438 * 2 1 3 22 22 C 1.52999 * 117.50306 * 1.54082 * 21 2 1 23 23 C 1.52996 * 117.49893 * 292.87879 * 21 2 1 24 24 H 1.09004 * 109.47184 * 90.00245 * 1 2 3 25 25 H 1.09001 * 109.47587 * 210.00105 * 1 2 3 26 26 H 1.09000 * 109.47239 * 330.00387 * 1 2 3 27 27 H 0.97003 * 119.99430 * 359.97438 * 7 5 3 28 28 H 1.08005 * 125.80458 * 359.97438 * 9 8 7 29 29 H 0.97003 * 120.00020 * 179.97438 * 15 14 12 30 30 H 1.08003 * 126.25042 * 0.02562 * 20 8 7 31 31 H 1.08997 * 115.54480 * 147.21170 * 21 2 1 32 32 H 1.09005 * 117.49499 * 359.97438 * 22 21 2 33 33 H 1.08991 * 117.50209 * 145.02133 * 22 21 2 34 34 H 1.09000 * 117.49688 * 214.98200 * 23 21 2 35 35 H 1.08995 * 117.50333 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1727 1.1529 0.0000 4 9 1.5054 2.3182 -0.1487 5 6 3.6364 1.1582 0.1620 6 8 4.2251 0.1217 0.4046 7 7 4.3237 2.3112 0.0415 8 6 5.7202 2.3160 0.1956 9 6 6.5268 1.1982 0.4762 10 7 7.7729 1.5938 0.5411 11 7 7.8106 2.9756 0.3147 12 6 8.9358 3.7627 0.3046 13 1 8.8656 4.8016 0.0179 14 6 10.1660 3.2209 0.6580 15 7 10.2735 1.9335 0.8921 16 14 11.6665 4.3245 0.7996 17 1 11.8424 4.7416 2.2139 18 1 12.8711 3.5823 0.3489 19 1 11.4787 5.5269 -0.0515 20 6 6.5312 3.3999 0.1002 21 6 2.2604 -1.3051 0.0006 22 6 1.4388 -2.5953 -0.0353 23 6 2.1567 -2.1802 1.2513 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 3.8543 3.1377 -0.1522 28 1 6.1777 0.1850 0.6112 29 1 11.1322 1.5554 1.1384 30 1 6.2208 4.4134 -0.1072 31 1 3.2114 -1.2991 -0.5320 32 1 0.3532 -2.5000 -0.0589 33 1 1.8494 -3.4382 -0.5911 34 1 3.0393 -2.7502 1.5414 35 1 1.5432 -1.8121 2.0736 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900437429.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:55 Heat of formation + Delta-G solvation = 27.656323 kcal Electronic energy + Delta-G solvation = -21041.477181 eV Core-core repulsion = 17570.745980 eV Total energy + Delta-G solvation = -3470.731200 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.89639 -41.76098 -40.48957 -38.66973 -35.97507 -34.98560 -33.90244 -32.27899 -30.12903 -28.78374 -26.81264 -24.56373 -23.22892 -22.87454 -22.52607 -21.28380 -19.96263 -19.47113 -18.54771 -17.67516 -17.44709 -17.01963 -16.73917 -16.06700 -15.74009 -15.58961 -15.30555 -15.05299 -14.89159 -14.80882 -13.99868 -13.70335 -13.47000 -13.35632 -13.18159 -12.98241 -12.82601 -12.52257 -12.20245 -12.07091 -11.90033 -11.73291 -11.44767 -11.05548 -10.85364 -10.46001 -10.12770 -9.73475 -8.56041 -8.49101 -6.26254 0.03056 1.26074 1.39609 1.58020 1.65781 1.94307 1.95354 2.20126 2.53653 2.80586 3.00403 3.06459 3.24179 3.58673 3.84108 4.01706 4.20799 4.24687 4.39194 4.41755 4.56128 4.68498 4.80973 4.91572 4.98308 5.00348 5.01531 5.12221 5.23467 5.27946 5.30039 5.43093 5.54477 5.93504 6.27717 6.62024 6.70645 7.20429 7.43004 7.64356 8.50538 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037099 B = 0.003683 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.552767 B = 7600.541510 C = 8277.165152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.022 4.022 3 C -0.032 4.032 4 F -0.134 7.134 5 C 0.526 3.474 6 O -0.539 6.539 7 N -0.612 5.612 8 C -0.048 4.048 9 C -0.052 4.052 10 N -0.309 5.309 11 N -0.166 5.166 12 C -0.356 4.356 13 H 0.140 0.860 14 C -0.005 4.005 15 N -0.823 5.823 16 Si 1.020 2.980 17 H -0.266 1.266 18 H -0.275 1.275 19 H -0.243 1.243 20 C -0.080 4.080 21 C -0.139 4.139 22 C -0.154 4.154 23 C -0.161 4.161 24 H 0.101 0.899 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.417 0.583 28 H 0.172 0.828 29 H 0.277 0.723 30 H 0.186 0.814 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.951 -1.442 -1.960 18.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.025 4.025 3 C -0.055 4.055 4 F -0.113 7.113 5 C 0.314 3.686 6 O -0.419 6.419 7 N -0.256 5.256 8 C -0.154 4.154 9 C -0.228 4.228 10 N -0.141 5.141 11 N 0.065 4.935 12 C -0.487 4.487 13 H 0.158 0.842 14 C -0.217 4.217 15 N -0.451 5.451 16 Si 0.839 3.161 17 H -0.191 1.191 18 H -0.200 1.200 19 H -0.166 1.166 20 C -0.231 4.231 21 C -0.157 4.157 22 C -0.190 4.190 23 C -0.198 4.198 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.098 0.902 27 H 0.253 0.747 28 H 0.189 0.811 29 H 0.087 0.913 30 H 0.203 0.797 31 H 0.123 0.877 32 H 0.142 0.858 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.201 -2.630 -1.556 16.487 hybrid contribution -0.129 1.169 -0.119 1.182 sum -16.330 -1.461 -1.675 16.480 Atomic orbital electron populations 1.21054 0.87176 1.04923 1.04781 1.22228 0.97967 0.91625 0.90718 1.18944 0.88115 0.82697 1.15711 1.91449 1.79567 1.46405 1.93871 1.18625 0.87264 0.83669 0.79039 1.90690 1.69462 1.32031 1.49682 1.42360 1.04051 1.10961 1.68195 1.17325 0.83534 0.94102 1.20477 1.24182 0.90511 0.99785 1.08297 1.78141 1.18393 0.90649 1.26946 1.44843 1.04889 1.04818 1.38927 1.20648 0.84194 0.94837 1.49003 0.84222 1.26889 1.03013 0.97654 0.94124 1.70394 1.26703 1.13144 1.34818 0.84563 0.74462 0.77656 0.79420 1.19142 1.20028 1.16608 1.21976 0.84533 0.99411 1.17136 1.21133 1.00575 0.88568 1.05442 1.23274 1.00041 0.96076 0.99647 1.22910 1.03055 1.01991 0.91816 0.88115 0.88200 0.90247 0.74664 0.81083 0.91304 0.79693 0.87713 0.85819 0.87703 0.89370 0.87902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 9.24 71.24 0.66 -1.10 16 2 C -0.02 -0.52 5.81 -17.60 -0.10 -0.62 16 3 C -0.03 -0.92 7.34 23.50 0.17 -0.74 16 4 F -0.13 -3.41 15.92 44.97 0.72 -2.70 16 5 C 0.53 19.38 7.65 86.61 0.66 20.04 16 6 O -0.54 -22.86 10.48 -4.17 -0.04 -22.90 16 7 N -0.61 -23.06 5.46 -307.01 -1.68 -24.73 16 8 C -0.05 -2.30 6.90 37.76 0.26 -2.03 16 9 C -0.05 -2.89 10.85 85.43 0.93 -1.96 16 10 N -0.31 -18.85 10.42 -56.45 -0.59 -19.44 16 11 N -0.17 -9.38 3.74 -190.00 -0.71 -10.08 16 12 C -0.36 -19.07 10.24 84.01 0.86 -18.21 16 13 H 0.14 6.51 7.84 -2.91 -0.02 6.49 16 14 C 0.00 -0.26 5.50 84.95 0.47 0.21 16 15 N -0.82 -47.71 11.84 21.66 0.26 -47.45 16 16 Si 1.02 38.78 29.56 68.60 2.03 40.81 16 17 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 18 H -0.28 -10.31 7.11 99.48 0.71 -9.60 16 19 H -0.24 -8.34 7.11 99.48 0.71 -7.63 16 20 C -0.08 -3.82 11.49 83.38 0.96 -2.86 16 21 C -0.14 -3.49 4.33 -11.54 -0.05 -3.54 16 22 C -0.15 -2.61 9.79 30.62 0.30 -2.31 16 23 C -0.16 -3.54 10.24 30.62 0.31 -3.23 16 24 H 0.10 1.14 8.14 -2.39 -0.02 1.13 16 25 H 0.10 1.02 6.37 -2.39 -0.02 1.00 16 26 H 0.08 1.11 7.66 -2.39 -0.02 1.09 16 27 H 0.42 12.64 8.39 -92.71 -0.78 11.87 16 28 H 0.17 9.34 5.91 -2.91 -0.02 9.32 16 29 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 30 H 0.19 7.07 8.06 -2.91 -0.02 7.05 16 31 H 0.11 3.40 6.27 -2.39 -0.01 3.38 16 32 H 0.12 1.41 6.31 -2.38 -0.02 1.39 16 33 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -72.61 305.78 5.78 -66.83 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: 0.37 Total: 36.03 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 5.43 Total: -16.37 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -2.72 Total: -101.71 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.04 Total: -22.90 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.72 Total: -2.70 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Total: -72.61 5.78 -66.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900437429.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.485 kcal (2) G-P(sol) polarization free energy of solvation -72.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds