Wall clock time and date at job start Tue Mar 31 2020 01:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46766 * 2 1 4 4 N 1.46904 * 109.47477 * 119.99774 * 2 1 3 5 5 C 1.46896 * 111.00047 * 275.00177 * 4 2 1 6 6 C 1.50703 * 109.47079 * 179.97438 * 5 4 2 7 7 C 1.38638 * 119.75320 * 269.73102 * 6 5 4 8 8 C 1.37608 * 120.24857 * 179.72043 * 7 6 5 9 9 C 1.40722 * 119.74596 * 0.56798 * 8 7 6 10 10 C 1.41394 * 120.24353 * 179.68162 * 9 8 7 11 11 H 1.07998 * 119.99731 * 204.40468 * 10 9 8 12 12 C 1.39943 * 119.99977 * 24.41363 * 10 9 8 13 13 N 1.30821 * 120.00282 * 17.83819 * 12 10 9 14 14 Si 1.86807 * 119.99520 * 197.84651 * 12 10 9 15 15 H 1.48496 * 109.47342 * 59.99681 * 14 12 10 16 16 H 1.48507 * 109.46655 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46845 * 299.99189 * 14 12 10 18 18 C 1.40718 * 119.50803 * 359.70319 * 9 8 7 19 19 C 1.37612 * 119.74812 * 0.02562 * 18 9 8 20 20 C 1.52999 * 109.47236 * 240.00194 * 2 1 3 21 21 Cl 1.80298 * 115.54815 * 279.41600 * 20 2 1 22 22 C 1.53000 * 117.49917 * 133.74414 * 20 2 1 23 23 C 1.53000 * 117.49915 * 65.08601 * 20 2 1 24 24 H 1.09006 * 109.46972 * 299.99676 * 1 2 3 25 25 H 1.09003 * 109.47101 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47343 * 59.99824 * 1 2 3 27 27 H 1.00907 * 110.99399 * 38.95956 * 4 2 1 28 28 H 1.08997 * 109.47273 * 299.99709 * 5 4 2 29 29 H 1.09001 * 109.47139 * 60.00111 * 5 4 2 30 30 H 1.08006 * 119.87257 * 359.97438 * 7 6 5 31 31 H 1.08004 * 120.12966 * 180.27711 * 8 7 6 32 32 H 0.97001 * 119.99676 * 180.02562 * 13 12 10 33 33 H 1.07997 * 120.12463 * 179.97438 * 18 9 8 34 34 H 1.07993 * 119.88059 * 179.97438 * 19 18 9 35 35 H 1.09002 * 117.49996 * 359.97438 * 22 20 2 36 36 H 1.08999 * 117.49767 * 145.01936 * 22 20 2 37 37 H 1.09001 * 117.49731 * 214.98205 * 23 20 2 38 38 H 1.09000 * 117.49633 * 359.97191 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5875 -0.5217 3.5560 7 6 1.6870 -1.1472 4.4045 8 6 2.1373 -1.8345 5.5084 9 6 3.5167 -1.8910 5.7809 10 6 3.9904 -2.5886 6.9159 11 1 4.9431 -2.3266 7.3520 12 6 3.2249 -3.6187 7.4739 13 7 2.2672 -4.1736 6.7765 14 14 3.5706 -4.2012 9.2149 15 1 3.3929 -3.0696 10.1599 16 1 2.6279 -5.2930 9.5678 17 1 4.9653 -4.7037 9.3009 18 6 4.4210 -1.2476 4.9158 19 6 3.9487 -0.5708 3.8147 20 6 2.0400 -0.7212 -1.2492 21 17 2.0483 -2.5219 -1.1586 22 6 3.1602 -0.0487 -2.0454 23 6 1.7365 -0.0835 -2.6065 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 1.4496 -1.4980 1.4100 28 1 2.7589 1.0462 2.1182 29 1 1.0871 0.6163 2.5525 30 1 0.6284 -1.0982 4.1961 31 1 1.4344 -2.3249 6.1656 32 1 1.7365 -4.8873 7.1636 33 1 5.4817 -1.2842 5.1157 34 1 4.6407 -0.0759 3.1496 35 1 3.5336 0.9078 -1.6794 36 1 3.9020 -0.6949 -2.5146 37 1 1.5422 -0.7527 -3.4447 38 1 1.1731 0.8495 -2.6094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926627255.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:36 Heat of formation + Delta-G solvation = 24.879694 kcal Electronic energy + Delta-G solvation = -18851.595122 eV Core-core repulsion = 15912.620236 eV Total energy + Delta-G solvation = -2938.974886 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -38.63668 -37.55798 -35.56952 -34.96147 -33.58172 -30.96688 -29.26701 -28.75736 -26.12384 -24.04140 -22.62895 -22.50608 -20.96468 -20.17753 -19.62622 -17.25365 -16.26354 -15.70127 -15.22746 -14.59756 -14.36359 -14.06535 -13.67894 -13.41590 -12.99987 -12.81960 -12.42192 -12.12043 -11.93597 -11.89651 -11.70630 -11.46467 -11.38486 -11.29990 -11.08029 -11.01138 -10.92240 -10.57335 -10.32796 -10.10467 -9.65390 -9.50320 -9.35323 -9.09876 -8.00571 -7.40718 -7.25423 -6.73126 -4.31653 2.24663 2.77814 3.07707 3.10343 3.13180 3.20816 3.47189 3.95023 4.20396 4.53490 4.64334 4.66507 4.99068 5.17371 5.25562 5.35575 5.39597 5.66362 5.69925 5.73769 5.78177 5.87001 5.91870 5.97044 6.12845 6.31111 6.40464 6.46286 6.98450 7.10766 7.31644 7.40507 7.42838 7.65356 7.77793 7.93506 8.08999 8.18330 8.34576 8.67664 8.93189 9.01917 10.21277 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030310 B = 0.003552 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.569849 B = 7881.071255 C = 8059.317780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.117 3.883 3 H 0.088 0.912 4 N -0.672 5.672 5 C 0.126 3.874 6 C -0.214 4.214 7 C -0.095 4.095 8 C -0.166 4.166 9 C 0.113 3.887 10 C -0.464 4.464 11 H 0.076 0.924 12 C 0.077 3.923 13 N -0.792 5.792 14 Si 0.907 3.093 15 H -0.264 1.264 16 H -0.279 1.279 17 H -0.266 1.266 18 C -0.229 4.229 19 C -0.067 4.067 20 C -0.028 4.028 21 Cl -0.130 7.130 22 C -0.161 4.161 23 C -0.172 4.172 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.348 0.652 28 H 0.060 0.940 29 H 0.019 0.981 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.280 0.720 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.529 6.859 -13.479 15.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.006 3.994 3 H 0.106 0.894 4 N -0.303 5.303 5 C -0.001 4.001 6 C -0.215 4.215 7 C -0.114 4.114 8 C -0.186 4.186 9 C 0.111 3.889 10 C -0.494 4.494 11 H 0.095 0.905 12 C -0.141 4.141 13 N -0.417 5.417 14 Si 0.731 3.269 15 H -0.189 1.189 16 H -0.204 1.204 17 H -0.190 1.190 18 C -0.248 4.248 19 C -0.086 4.086 20 C -0.055 4.055 21 Cl -0.103 7.103 22 C -0.198 4.198 23 C -0.210 4.210 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.167 0.833 28 H 0.078 0.922 29 H 0.037 0.963 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.042 6.598 -13.609 15.427 hybrid contribution -0.812 -0.527 0.910 1.329 sum -3.855 6.071 -12.699 14.594 Atomic orbital electron populations 1.22506 0.96753 1.02793 1.02071 1.21161 0.92631 0.96511 0.89057 0.89440 1.60655 1.57018 1.09674 1.02955 1.20580 0.97533 0.93645 0.88374 1.18864 0.93667 1.10237 0.98764 1.20513 0.96389 0.98397 0.96053 1.21262 0.96040 1.02513 0.98766 1.17612 0.91449 0.88988 0.90887 1.19572 1.04874 1.14416 1.10522 0.90547 1.25900 0.93889 0.95366 0.98966 1.69827 1.16731 1.18873 1.36312 0.86393 0.79248 0.78713 0.82503 1.18865 1.20371 1.19019 1.20969 0.97569 1.08268 0.98033 1.20318 0.93849 0.98265 0.96155 1.24159 1.05750 0.81489 0.94071 1.98701 1.98733 1.14087 1.98762 1.23415 0.92002 1.02451 1.01977 1.23460 0.99207 1.02627 0.95688 0.92103 0.91901 0.92272 0.83258 0.92163 0.96264 0.89990 0.86600 0.90883 0.89172 0.89523 0.87722 0.87822 0.87856 0.87804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 9.05 37.16 0.34 -1.67 16 2 C 0.12 1.45 2.66 -67.71 -0.18 1.27 16 3 H 0.09 1.01 7.60 -51.93 -0.39 0.61 16 4 N -0.67 -10.69 5.69 -107.99 -0.61 -11.30 16 5 C 0.13 2.16 5.60 -4.98 -0.03 2.13 16 6 C -0.21 -4.60 5.42 -104.32 -0.56 -5.16 16 7 C -0.09 -2.19 9.67 -39.66 -0.38 -2.57 16 8 C -0.17 -4.35 8.70 -38.87 -0.34 -4.68 16 9 C 0.11 3.05 5.58 -106.82 -0.60 2.46 16 10 C -0.46 -12.49 9.05 -37.74 -0.34 -12.84 16 11 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 12 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 13 N -0.79 -20.73 10.95 55.55 0.61 -20.12 16 14 Si 0.91 18.84 29.60 -169.99 -5.03 13.81 16 15 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 16 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 17 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 18 C -0.23 -5.72 9.80 -38.87 -0.38 -6.10 16 19 C -0.07 -1.52 9.67 -39.66 -0.38 -1.91 16 20 C -0.03 -0.33 2.31 -90.62 -0.21 -0.54 16 21 Cl -0.13 -1.83 28.35 -51.86 -1.47 -3.30 16 22 C -0.16 -1.60 10.02 -26.69 -0.27 -1.87 16 23 C -0.17 -1.52 9.66 -26.70 -0.26 -1.78 16 24 H 0.06 0.68 7.45 -51.93 -0.39 0.30 16 25 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 26 H 0.06 0.54 7.64 -51.93 -0.40 0.14 16 27 H 0.35 5.97 8.19 -39.29 -0.32 5.65 16 28 H 0.06 0.98 7.99 -51.93 -0.42 0.56 16 29 H 0.02 0.31 7.37 -51.93 -0.38 -0.07 16 30 H 0.08 1.72 8.06 -52.48 -0.42 1.30 16 31 H 0.12 3.13 6.16 -52.48 -0.32 2.81 16 32 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 33 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 34 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 0.76 7.93 -51.93 -0.41 0.35 16 LS Contribution 331.44 15.07 4.99 4.99 Total: -1.00 -27.38 331.44 -10.73 -38.12 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -5.54 Total: 9.21 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: -3.68 Total: -31.42 kcal Atomic # 7 Polarization: -31.42 SS G_CDS: -0.01 Total: -31.42 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -1.47 Total: -3.30 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.38 -10.73 -38.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926627255.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.998 kcal (2) G-P(sol) polarization free energy of solvation -27.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds