Wall clock time and date at job start Tue Mar 31 2020 01:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46766 * 2 1 4 4 N 1.46904 * 109.47477 * 119.99774 * 2 1 3 5 5 C 1.46896 * 111.00047 * 275.00177 * 4 2 1 6 6 C 1.50703 * 109.47079 * 179.97438 * 5 4 2 7 7 C 1.38638 * 119.75320 * 269.73102 * 6 5 4 8 8 C 1.37608 * 120.24857 * 179.72043 * 7 6 5 9 9 C 1.40722 * 119.74596 * 0.56798 * 8 7 6 10 10 C 1.41394 * 120.24353 * 179.68162 * 9 8 7 11 11 H 1.07998 * 119.99731 * 204.40468 * 10 9 8 12 12 C 1.39943 * 119.99977 * 24.41363 * 10 9 8 13 13 N 1.30821 * 120.00282 * 17.83819 * 12 10 9 14 14 Si 1.86807 * 119.99520 * 197.84651 * 12 10 9 15 15 H 1.48496 * 109.47342 * 59.99681 * 14 12 10 16 16 H 1.48507 * 109.46655 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46845 * 299.99189 * 14 12 10 18 18 C 1.40718 * 119.50803 * 359.70319 * 9 8 7 19 19 C 1.37612 * 119.74812 * 0.02562 * 18 9 8 20 20 C 1.52999 * 109.47236 * 240.00194 * 2 1 3 21 21 Cl 1.80298 * 115.54815 * 279.41600 * 20 2 1 22 22 C 1.53000 * 117.49917 * 133.74414 * 20 2 1 23 23 C 1.53000 * 117.49915 * 65.08601 * 20 2 1 24 24 H 1.09006 * 109.46972 * 299.99676 * 1 2 3 25 25 H 1.09003 * 109.47101 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47343 * 59.99824 * 1 2 3 27 27 H 1.00907 * 110.99399 * 38.95956 * 4 2 1 28 28 H 1.08997 * 109.47273 * 299.99709 * 5 4 2 29 29 H 1.09001 * 109.47139 * 60.00111 * 5 4 2 30 30 H 1.08006 * 119.87257 * 359.97438 * 7 6 5 31 31 H 1.08004 * 120.12966 * 180.27711 * 8 7 6 32 32 H 0.97001 * 119.99676 * 180.02562 * 13 12 10 33 33 H 1.07997 * 120.12463 * 179.97438 * 18 9 8 34 34 H 1.07993 * 119.88059 * 179.97438 * 19 18 9 35 35 H 1.09002 * 117.49996 * 359.97438 * 22 20 2 36 36 H 1.08999 * 117.49767 * 145.01936 * 22 20 2 37 37 H 1.09001 * 117.49731 * 214.98205 * 23 20 2 38 38 H 1.09000 * 117.49633 * 359.97191 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5875 -0.5217 3.5560 7 6 1.6870 -1.1472 4.4045 8 6 2.1373 -1.8345 5.5084 9 6 3.5167 -1.8910 5.7809 10 6 3.9904 -2.5886 6.9159 11 1 4.9431 -2.3266 7.3520 12 6 3.2249 -3.6187 7.4739 13 7 2.2672 -4.1736 6.7765 14 14 3.5706 -4.2012 9.2149 15 1 3.3929 -3.0696 10.1599 16 1 2.6279 -5.2930 9.5678 17 1 4.9653 -4.7037 9.3009 18 6 4.4210 -1.2476 4.9158 19 6 3.9487 -0.5708 3.8147 20 6 2.0400 -0.7212 -1.2492 21 17 2.0483 -2.5219 -1.1586 22 6 3.1602 -0.0487 -2.0454 23 6 1.7365 -0.0835 -2.6065 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 1.4496 -1.4980 1.4100 28 1 2.7589 1.0462 2.1182 29 1 1.0871 0.6163 2.5525 30 1 0.6284 -1.0982 4.1961 31 1 1.4344 -2.3249 6.1656 32 1 1.7365 -4.8873 7.1636 33 1 5.4817 -1.2842 5.1157 34 1 4.6407 -0.0759 3.1496 35 1 3.5336 0.9078 -1.6794 36 1 3.9020 -0.6949 -2.5146 37 1 1.5422 -0.7527 -3.4447 38 1 1.1731 0.8495 -2.6094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926627255.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:35 Heat of formation + Delta-G solvation = 11.444140 kcal Electronic energy + Delta-G solvation = -18852.177731 eV Core-core repulsion = 15912.620236 eV Total energy + Delta-G solvation = -2939.557495 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -39.80696 -39.11087 -36.77612 -36.02902 -35.28279 -32.50067 -31.13899 -30.20606 -27.70419 -25.35333 -23.88480 -23.28067 -22.85592 -21.67133 -20.82319 -19.19366 -17.37807 -17.06635 -16.66089 -15.88031 -15.77055 -15.54328 -15.11228 -14.96518 -14.26315 -14.04275 -13.79575 -13.73198 -13.45579 -13.13626 -12.86296 -12.80067 -12.67477 -12.59073 -12.37806 -12.29727 -12.14246 -12.03209 -11.95430 -11.41695 -11.24919 -11.01821 -10.95933 -10.50382 -9.36967 -9.23074 -9.08761 -8.61955 -6.31439 0.97561 1.19190 1.35383 1.37349 1.48645 1.53706 2.21145 2.62738 2.75186 3.28912 3.67744 3.81837 3.82513 4.02766 4.25824 4.31650 4.38002 4.43975 4.59578 4.64136 4.68433 4.72203 4.82806 4.93882 4.96525 4.99521 5.07744 5.17958 5.18405 5.26165 5.41055 5.51005 5.74060 5.98671 6.12744 6.23735 6.29385 6.43117 6.51178 6.73419 6.96767 7.07460 8.34678 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030310 B = 0.003552 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.569849 B = 7881.071255 C = 8059.317780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.120 3.880 3 H 0.103 0.897 4 N -0.684 5.684 5 C 0.134 3.866 6 C -0.198 4.198 7 C -0.098 4.098 8 C -0.191 4.191 9 C 0.079 3.921 10 C -0.506 4.506 11 H 0.073 0.927 12 C 0.035 3.965 13 N -0.826 5.826 14 Si 0.981 3.019 15 H -0.260 1.260 16 H -0.267 1.267 17 H -0.260 1.260 18 C -0.246 4.246 19 C -0.072 4.072 20 C -0.051 4.051 21 Cl -0.160 7.160 22 C -0.162 4.162 23 C -0.147 4.147 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.082 0.918 27 H 0.338 0.662 28 H 0.077 0.923 29 H 0.033 0.967 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.287 0.713 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.987 8.403 -14.931 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.010 3.990 3 H 0.121 0.879 4 N -0.314 5.314 5 C 0.006 3.994 6 C -0.200 4.200 7 C -0.117 4.117 8 C -0.210 4.210 9 C 0.077 3.923 10 C -0.536 4.536 11 H 0.091 0.909 12 C -0.179 4.179 13 N -0.452 5.452 14 Si 0.802 3.198 15 H -0.185 1.185 16 H -0.191 1.191 17 H -0.184 1.184 18 C -0.266 4.266 19 C -0.090 4.090 20 C -0.077 4.077 21 Cl -0.134 7.134 22 C -0.199 4.199 23 C -0.185 4.185 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.156 0.844 28 H 0.095 0.905 29 H 0.051 0.949 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.498 8.159 -15.088 17.506 hybrid contribution -0.686 -0.886 1.168 1.619 sum -4.184 7.273 -13.920 16.253 Atomic orbital electron populations 1.22442 0.95718 1.02288 1.03118 1.21249 0.93470 0.96814 0.87513 0.87871 1.60559 1.57750 1.09511 1.03582 1.20497 0.98458 0.93451 0.86991 1.19355 0.93012 1.08135 0.99463 1.20780 0.97911 0.97723 0.95298 1.21241 0.95638 1.04077 1.00082 1.17950 0.92281 0.90169 0.91885 1.19822 1.05716 1.16055 1.11967 0.90897 1.26744 0.93365 0.94876 1.02933 1.69885 1.17725 1.19518 1.38098 0.85272 0.79353 0.78378 0.76800 1.18455 1.19142 1.18443 1.21175 0.97632 1.08950 0.98846 1.20641 0.95023 0.97746 0.95617 1.24329 1.08320 0.79719 0.95342 1.98698 1.98852 1.16959 1.98849 1.23520 0.92410 1.02527 1.01412 1.23574 0.98281 1.02926 0.93687 0.92314 0.93198 0.89927 0.84368 0.90484 0.94861 0.87929 0.88430 0.90254 0.88978 0.86948 0.86517 0.88194 0.87339 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.37 9.05 71.98 0.65 -2.72 16 2 C 0.12 2.58 2.66 44.91 0.12 2.70 16 3 H 0.10 1.93 7.60 -2.38 -0.02 1.91 16 4 N -0.68 -20.26 5.69 -495.57 -2.82 -23.08 16 5 C 0.13 4.20 5.60 85.56 0.48 4.68 16 6 C -0.20 -8.27 5.42 -19.67 -0.11 -8.38 16 7 C -0.10 -4.55 9.67 22.22 0.21 -4.34 16 8 C -0.19 -10.30 8.70 22.73 0.20 -10.11 16 9 C 0.08 4.45 5.58 -21.29 -0.12 4.33 16 10 C -0.51 -28.38 9.05 23.46 0.21 -28.17 16 11 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 12 C 0.04 1.85 5.14 85.26 0.44 2.28 16 13 N -0.83 -44.69 10.95 21.83 0.24 -44.45 16 14 Si 0.98 39.36 29.60 68.60 2.03 41.39 16 15 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 16 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 17 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 18 C -0.25 -12.58 9.80 22.73 0.22 -12.36 16 19 C -0.07 -3.19 9.67 22.22 0.21 -2.98 16 20 C -0.05 -1.06 2.31 -10.79 -0.02 -1.09 16 21 Cl -0.16 -4.37 28.35 -2.72 -0.08 -4.45 16 22 C -0.16 -2.73 10.02 30.62 0.31 -2.43 16 23 C -0.15 -2.07 9.66 30.62 0.30 -1.77 16 24 H 0.06 1.14 7.45 -2.38 -0.02 1.12 16 25 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 26 H 0.08 1.18 7.64 -2.39 -0.02 1.16 16 27 H 0.34 11.19 8.19 -89.69 -0.73 10.46 16 28 H 0.08 2.20 7.99 -2.39 -0.02 2.18 16 29 H 0.03 0.97 7.37 -2.39 -0.02 0.95 16 30 H 0.10 4.23 8.06 -2.91 -0.02 4.20 16 31 H 0.10 5.53 6.16 -2.91 -0.02 5.51 16 32 H 0.29 14.06 8.30 -92.71 -0.77 13.29 16 33 H 0.09 4.51 8.06 -2.91 -0.02 4.48 16 34 H 0.11 4.38 8.06 -2.91 -0.02 4.35 16 35 H 0.12 1.69 8.08 -2.39 -0.02 1.67 16 36 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.13 1.23 7.93 -2.39 -0.02 1.21 16 Total: -1.00 -61.29 331.44 2.79 -58.50 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 0.32 Total: 32.43 kcal Atomic # 6 Polarization: -63.45 SS G_CDS: 3.10 Total: -60.34 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -2.58 Total: -67.53 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Atomic # 17 Polarization: -4.37 SS G_CDS: -0.08 Total: -4.45 kcal Total: -61.29 2.79 -58.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926627255.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.940 kcal (2) G-P(sol) polarization free energy of solvation -61.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds