Wall clock time and date at job start Tue Mar 31 2020 01:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47553 * 2 1 4 4 N 1.46499 * 109.47432 * 120.00257 * 2 1 3 5 5 C 1.39675 * 119.99651 * 275.00084 * 4 2 1 6 6 C 1.38914 * 120.07321 * 179.97438 * 5 4 2 7 7 C 1.38100 * 119.92419 * 179.97438 * 6 5 4 8 8 C 1.38288 * 120.07489 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.92199 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47001 * 90.00208 * 9 8 7 11 11 H 1.08005 * 119.99817 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00081 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99848 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00321 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46938 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47198 * 120.00527 * 14 12 10 17 17 H 1.48498 * 109.47360 * 240.00281 * 14 12 10 18 18 C 1.38283 * 120.14964 * 0.27921 * 8 7 6 19 19 C 1.38105 * 120.07446 * 359.44518 * 18 8 7 20 20 C 1.53004 * 109.46813 * 239.99858 * 2 1 3 21 21 Cl 1.80291 * 115.55212 * 279.41748 * 20 2 1 22 22 C 1.53000 * 117.49538 * 133.74714 * 20 2 1 23 23 C 1.53004 * 117.49749 * 65.08816 * 20 2 1 24 24 H 1.08992 * 109.47174 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46581 * 300.00213 * 1 2 3 26 26 H 1.08998 * 109.46904 * 60.00026 * 1 2 3 27 27 H 0.96996 * 119.99941 * 94.99392 * 4 2 1 28 28 H 1.07999 * 120.03471 * 359.95073 * 6 5 4 29 29 H 1.08005 * 119.96293 * 179.97438 * 7 6 5 30 30 H 1.09000 * 109.46646 * 209.99665 * 9 8 7 31 31 H 1.09000 * 109.47248 * 330.00383 * 9 8 7 32 32 H 0.96998 * 119.99944 * 179.97438 * 13 12 10 33 33 H 1.08001 * 119.96059 * 179.69879 * 18 8 7 34 34 H 1.07994 * 120.03590 * 180.27360 * 19 18 8 35 35 H 1.09000 * 117.50238 * 359.97438 * 22 20 2 36 36 H 1.09001 * 117.49776 * 145.02201 * 22 20 2 37 37 H 1.08999 * 117.49596 * 214.97846 * 23 20 2 38 38 H 1.09004 * 117.49671 * 359.97438 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1518 0.0062 2.3993 6 6 2.6143 -0.6473 3.5345 7 6 2.7455 0.0448 4.7224 8 6 2.4176 1.3869 4.7824 9 6 2.5626 2.1389 6.0803 10 6 3.9457 2.7312 6.1658 11 1 4.6495 2.5780 5.3609 12 6 4.3127 3.4687 7.2714 13 7 3.4559 3.6548 8.2517 14 14 6.0273 4.2023 7.3777 15 1 6.7932 3.8499 6.1552 16 1 5.9276 5.6797 7.4903 17 1 6.7242 3.6609 8.5721 18 6 1.9520 2.0391 3.6554 19 6 1.8238 1.3545 2.4629 20 6 2.0400 -0.7213 -1.2493 21 17 2.0482 -2.5219 -1.1587 22 6 3.1602 -0.0489 -2.0454 23 6 1.7364 -0.0836 -2.6066 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.2490 -1.6318 1.1525 28 1 2.8705 -1.6954 3.4883 29 1 3.1046 -0.4627 5.6056 30 1 1.8221 2.9377 6.1220 31 1 2.4077 1.4557 6.9154 32 1 3.7142 4.1733 9.0297 33 1 1.6922 3.0862 3.7069 34 1 1.4642 1.8656 1.5821 35 1 3.5336 0.9076 -1.6795 36 1 3.9019 -0.6951 -2.5147 37 1 1.5421 -0.7528 -3.4448 38 1 1.1730 0.8495 -2.6095 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926894194.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:30 Heat of formation + Delta-G solvation = 31.826111 kcal Electronic energy + Delta-G solvation = -18774.626923 eV Core-core repulsion = 15835.953257 eV Total energy + Delta-G solvation = -2938.673666 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.39134 -38.17978 -35.83828 -35.17703 -33.02786 -31.23211 -30.14221 -29.16285 -26.24058 -24.21876 -22.86841 -22.62941 -22.21395 -20.27391 -19.85654 -17.09100 -16.84597 -16.22080 -15.17154 -14.91374 -14.68182 -14.23079 -13.95813 -13.58467 -13.21209 -12.98660 -12.67481 -12.47943 -12.30196 -12.27490 -11.88240 -11.74278 -11.66334 -11.45452 -11.19000 -11.14245 -10.66022 -10.55265 -10.48731 -10.11105 -10.05804 -9.74143 -9.38941 -8.99497 -8.36111 -8.20822 -6.74763 -5.95885 -4.00262 1.72628 2.15000 2.39069 3.06588 3.32867 3.40379 3.45784 3.57522 4.10319 4.28149 4.36180 4.45971 4.69965 4.97026 5.13242 5.14789 5.19237 5.36818 5.41698 5.50593 5.55583 5.60452 5.62238 5.72616 6.06992 6.08322 6.18213 6.35377 6.46959 6.74343 6.88098 7.32808 7.33656 7.45921 7.64015 7.87014 7.99735 8.00666 8.08239 8.43249 9.05971 9.63213 11.12494 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030153 B = 0.003349 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.359698 B = 8359.705105 C = 8532.325887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.193 3.807 3 H 0.092 0.908 4 N -0.750 5.750 5 C 0.184 3.816 6 C -0.191 4.191 7 C -0.079 4.079 8 C -0.084 4.084 9 C 0.053 3.947 10 C -0.507 4.507 11 H 0.057 0.943 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.081 4.081 19 C -0.197 4.197 20 C -0.060 4.060 21 Cl -0.133 7.133 22 C -0.161 4.161 23 C -0.158 4.158 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.397 0.603 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.873 -8.694 -21.333 23.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.086 3.914 3 H 0.110 0.890 4 N -0.384 5.384 5 C 0.085 3.915 6 C -0.214 4.214 7 C -0.097 4.097 8 C -0.085 4.085 9 C 0.016 3.984 10 C -0.545 4.545 11 H 0.075 0.925 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.099 4.099 19 C -0.219 4.219 20 C -0.086 4.086 21 Cl -0.106 7.106 22 C -0.198 4.198 23 C -0.195 4.195 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.233 0.767 28 H 0.126 0.874 29 H 0.134 0.866 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.949 -8.627 -21.269 23.480 hybrid contribution 1.084 -0.109 0.089 1.093 sum -3.865 -8.736 -21.180 23.235 Atomic orbital electron populations 1.22308 0.95187 1.02877 1.02410 1.20361 0.93895 0.95371 0.81764 0.88986 1.44509 1.75293 1.12161 1.06412 1.17574 0.96944 0.91488 0.85515 1.20462 1.08882 0.99333 0.92689 1.20834 0.98035 0.94369 0.96506 1.20456 0.96724 0.93608 0.97754 1.18253 0.97200 0.94553 0.88420 1.21177 0.97904 1.31753 1.03695 0.92508 1.25022 0.97270 0.96447 0.95755 1.69974 1.34775 1.40687 1.08122 0.86522 0.84613 0.78831 0.77999 1.19718 1.21032 1.21018 1.20836 0.98115 0.99141 0.91827 1.20509 1.10050 0.92942 0.98442 1.24544 1.07505 0.80997 0.95576 1.98697 1.98805 1.14644 1.98471 1.23549 0.92202 1.02612 1.01415 1.23460 0.98874 1.02691 0.94518 0.92022 0.91252 0.92028 0.76731 0.87440 0.86584 0.95702 0.95698 0.93034 0.86677 0.87408 0.87091 0.87475 0.87367 0.87115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 9.32 37.16 0.35 -1.28 16 2 C 0.19 1.99 2.34 -67.93 -0.16 1.83 16 3 H 0.09 0.96 6.28 -51.93 -0.33 0.64 16 4 N -0.75 -9.67 5.21 -52.16 -0.27 -9.94 16 5 C 0.18 2.97 6.64 -83.78 -0.56 2.41 16 6 C -0.19 -3.32 9.90 -39.38 -0.39 -3.71 16 7 C -0.08 -1.58 9.69 -39.61 -0.38 -1.97 16 8 C -0.08 -1.86 5.07 -104.58 -0.53 -2.39 16 9 C 0.05 1.38 5.10 -29.03 -0.15 1.23 16 10 C -0.51 -14.44 9.09 -34.44 -0.31 -14.76 16 11 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 14 Si 0.89 21.81 29.54 -169.99 -5.02 16.78 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 C -0.08 -1.59 9.69 -39.61 -0.38 -1.98 16 19 C -0.20 -3.31 8.85 -39.38 -0.35 -3.65 16 20 C -0.06 -0.53 2.31 -90.62 -0.21 -0.74 16 21 Cl -0.13 -1.32 27.58 -51.86 -1.43 -2.75 16 22 C -0.16 -1.20 10.02 -26.69 -0.27 -1.46 16 23 C -0.16 -1.02 9.66 -26.69 -0.26 -1.28 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.76 7.72 -51.93 -0.40 0.36 16 26 H 0.06 0.47 7.64 -51.93 -0.40 0.07 16 27 H 0.40 4.95 7.11 -40.82 -0.29 4.66 16 28 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 29 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 30 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 31 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 34 H 0.11 1.53 6.13 -52.49 -0.32 1.21 16 35 H 0.11 0.80 8.08 -51.93 -0.42 0.38 16 36 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.11 0.58 7.93 -51.93 -0.41 0.17 16 LS Contribution 331.79 15.07 5.00 5.00 Total: -1.00 -30.34 331.79 -10.17 -40.51 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.48 Total: 2.73 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: -3.70 Total: -26.23 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.46 Total: -36.04 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.43 Total: -2.75 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.34 -10.17 -40.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926894194.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.335 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds