Wall clock time and date at job start Tue Mar 31 2020 01:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47553 * 2 1 4 4 N 1.46499 * 109.47432 * 120.00257 * 2 1 3 5 5 C 1.39675 * 119.99651 * 275.00084 * 4 2 1 6 6 C 1.38914 * 120.07321 * 179.97438 * 5 4 2 7 7 C 1.38100 * 119.92419 * 179.97438 * 6 5 4 8 8 C 1.38288 * 120.07489 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.92199 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47001 * 90.00208 * 9 8 7 11 11 H 1.08005 * 119.99817 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00081 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99848 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00321 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46938 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47198 * 120.00527 * 14 12 10 17 17 H 1.48498 * 109.47360 * 240.00281 * 14 12 10 18 18 C 1.38283 * 120.14964 * 0.27921 * 8 7 6 19 19 C 1.38105 * 120.07446 * 359.44518 * 18 8 7 20 20 C 1.53004 * 109.46813 * 239.99858 * 2 1 3 21 21 Cl 1.80291 * 115.55212 * 279.41748 * 20 2 1 22 22 C 1.53000 * 117.49538 * 133.74714 * 20 2 1 23 23 C 1.53004 * 117.49749 * 65.08816 * 20 2 1 24 24 H 1.08992 * 109.47174 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46581 * 300.00213 * 1 2 3 26 26 H 1.08998 * 109.46904 * 60.00026 * 1 2 3 27 27 H 0.96996 * 119.99941 * 94.99392 * 4 2 1 28 28 H 1.07999 * 120.03471 * 359.95073 * 6 5 4 29 29 H 1.08005 * 119.96293 * 179.97438 * 7 6 5 30 30 H 1.09000 * 109.46646 * 209.99665 * 9 8 7 31 31 H 1.09000 * 109.47248 * 330.00383 * 9 8 7 32 32 H 0.96998 * 119.99944 * 179.97438 * 13 12 10 33 33 H 1.08001 * 119.96059 * 179.69879 * 18 8 7 34 34 H 1.07994 * 120.03590 * 180.27360 * 19 18 8 35 35 H 1.09000 * 117.50238 * 359.97438 * 22 20 2 36 36 H 1.09001 * 117.49776 * 145.02201 * 22 20 2 37 37 H 1.08999 * 117.49596 * 214.97846 * 23 20 2 38 38 H 1.09004 * 117.49671 * 359.97438 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1518 0.0062 2.3993 6 6 2.6143 -0.6473 3.5345 7 6 2.7455 0.0448 4.7224 8 6 2.4176 1.3869 4.7824 9 6 2.5626 2.1389 6.0803 10 6 3.9457 2.7312 6.1658 11 1 4.6495 2.5780 5.3609 12 6 4.3127 3.4687 7.2714 13 7 3.4559 3.6548 8.2517 14 14 6.0273 4.2023 7.3777 15 1 6.7932 3.8499 6.1552 16 1 5.9276 5.6797 7.4903 17 1 6.7242 3.6609 8.5721 18 6 1.9520 2.0391 3.6554 19 6 1.8238 1.3545 2.4629 20 6 2.0400 -0.7213 -1.2493 21 17 2.0482 -2.5219 -1.1587 22 6 3.1602 -0.0489 -2.0454 23 6 1.7364 -0.0836 -2.6066 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.2490 -1.6318 1.1525 28 1 2.8705 -1.6954 3.4883 29 1 3.1046 -0.4627 5.6056 30 1 1.8221 2.9377 6.1220 31 1 2.4077 1.4557 6.9154 32 1 3.7142 4.1733 9.0297 33 1 1.6922 3.0862 3.7069 34 1 1.4642 1.8656 1.5821 35 1 3.5336 0.9076 -1.6795 36 1 3.9019 -0.6951 -2.5147 37 1 1.5421 -0.7528 -3.4448 38 1 1.1730 0.8495 -2.6095 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926894194.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:29 Heat of formation + Delta-G solvation = 16.410144 kcal Electronic energy + Delta-G solvation = -18775.295409 eV Core-core repulsion = 15835.953257 eV Total energy + Delta-G solvation = -2939.342153 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.54889 -39.16945 -36.75661 -36.17311 -34.96842 -32.63754 -31.63619 -30.53471 -27.91161 -25.40800 -24.28303 -23.59211 -23.32926 -21.60392 -20.90376 -18.48470 -18.23042 -17.70083 -16.73876 -16.02751 -15.88459 -15.56956 -15.05039 -14.77646 -14.47888 -14.40741 -14.16171 -13.85662 -13.48440 -13.22826 -13.12195 -12.91831 -12.86231 -12.55764 -12.40791 -12.36401 -12.28213 -12.16703 -11.61906 -11.56997 -11.34520 -11.24168 -10.78125 -10.57684 -10.50012 -9.67484 -8.30100 -7.96015 -6.29134 0.68021 0.89271 1.06583 1.40435 1.40723 1.54642 2.33950 2.42416 2.72461 3.13708 3.16327 3.38296 3.64732 3.79842 4.08063 4.19946 4.31506 4.39432 4.50904 4.55621 4.67399 4.69375 4.78318 4.85616 4.92372 4.92780 5.08976 5.12618 5.20074 5.33784 5.38771 5.40959 5.56217 5.71320 5.82315 6.04054 6.24406 6.26175 6.57809 6.84575 6.89041 7.39270 8.93147 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030153 B = 0.003349 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.359698 B = 8359.705105 C = 8532.325887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.188 3.812 3 H 0.098 0.902 4 N -0.740 5.740 5 C 0.201 3.799 6 C -0.193 4.193 7 C -0.089 4.089 8 C -0.122 4.122 9 C 0.063 3.937 10 C -0.524 4.524 11 H 0.053 0.947 12 C 0.001 3.999 13 N -0.933 5.933 14 Si 0.965 3.035 15 H -0.266 1.266 16 H -0.275 1.275 17 H -0.277 1.277 18 C -0.088 4.088 19 C -0.190 4.190 20 C -0.076 4.076 21 Cl -0.146 7.146 22 C -0.161 4.161 23 C -0.138 4.138 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.400 0.600 28 H 0.132 0.868 29 H 0.109 0.891 30 H -0.001 1.001 31 H -0.004 1.004 32 H 0.264 0.736 33 H 0.112 0.888 34 H 0.139 0.861 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.309 -8.878 -24.308 26.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.082 3.918 3 H 0.115 0.885 4 N -0.373 5.373 5 C 0.100 3.900 6 C -0.216 4.216 7 C -0.107 4.107 8 C -0.124 4.124 9 C 0.026 3.974 10 C -0.562 4.562 11 H 0.071 0.929 12 C -0.196 4.196 13 N -0.573 5.573 14 Si 0.790 3.210 15 H -0.190 1.190 16 H -0.201 1.201 17 H -0.202 1.202 18 C -0.106 4.106 19 C -0.213 4.213 20 C -0.102 4.102 21 Cl -0.120 7.120 22 C -0.198 4.198 23 C -0.175 4.175 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.105 0.895 27 H 0.237 0.763 28 H 0.150 0.850 29 H 0.127 0.873 30 H 0.017 0.983 31 H 0.014 0.986 32 H 0.073 0.927 33 H 0.130 0.870 34 H 0.157 0.843 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.135 0.865 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.397 -8.833 -24.289 26.217 hybrid contribution 0.840 -0.124 0.887 1.228 sum -3.557 -8.957 -23.402 25.309 Atomic orbital electron populations 1.22266 0.94408 1.02703 1.02990 1.20565 0.94428 0.95555 0.81228 0.88484 1.44646 1.74163 1.12357 1.06137 1.17640 0.94739 0.91358 0.86307 1.20630 1.08568 1.00373 0.91991 1.20804 0.98561 0.93734 0.97631 1.20138 1.00908 0.94622 0.96757 1.17986 0.95748 0.93491 0.90160 1.21484 0.98833 1.32122 1.03782 0.92904 1.25953 1.01685 0.96771 0.95234 1.70100 1.37002 1.41429 1.08774 0.85395 0.79223 0.78147 0.78270 1.18971 1.20081 1.20237 1.20848 0.98255 0.99237 0.92293 1.20683 1.09200 0.93185 0.98186 1.24525 1.09534 0.80155 0.95990 1.98698 1.98881 1.15886 1.98492 1.23630 0.92707 1.02505 1.01002 1.23597 0.97980 1.02984 0.92937 0.92583 0.92638 0.89510 0.76285 0.85048 0.87315 0.98316 0.98552 0.92684 0.86999 0.84302 0.86752 0.87272 0.86491 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 9.32 71.98 0.67 -2.00 16 2 C 0.19 3.28 2.34 44.99 0.11 3.38 16 3 H 0.10 1.65 6.28 -2.39 -0.01 1.64 16 4 N -0.74 -17.11 5.21 -318.94 -1.66 -18.77 16 5 C 0.20 6.09 6.64 38.21 0.25 6.35 16 6 C -0.19 -6.49 9.90 22.40 0.22 -6.27 16 7 C -0.09 -3.64 9.69 22.25 0.22 -3.42 16 8 C -0.12 -5.65 5.07 -19.84 -0.10 -5.75 16 9 C 0.06 3.53 5.10 29.10 0.15 3.67 16 10 C -0.52 -30.94 9.09 25.60 0.23 -30.71 16 11 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 12 C 0.00 0.06 5.46 84.65 0.46 0.53 16 13 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 14 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 C -0.09 -3.50 9.69 22.25 0.22 -3.28 16 19 C -0.19 -6.05 8.85 22.40 0.20 -5.86 16 20 C -0.08 -1.10 2.31 -10.79 -0.02 -1.12 16 21 Cl -0.15 -2.56 27.58 -2.72 -0.08 -2.64 16 22 C -0.16 -1.89 10.02 30.62 0.31 -1.58 16 23 C -0.14 -1.25 9.66 30.62 0.30 -0.95 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.05 1.07 7.72 -2.38 -0.02 1.05 16 26 H 0.09 0.97 7.64 -2.39 -0.02 0.95 16 27 H 0.40 8.95 7.11 -92.71 -0.66 8.30 16 28 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 29 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 30 H 0.00 -0.09 8.08 -2.39 -0.02 -0.11 16 31 H 0.00 -0.23 8.08 -2.39 -0.02 -0.25 16 32 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 34 H 0.14 3.51 6.13 -2.91 -0.02 3.49 16 35 H 0.11 1.28 8.08 -2.39 -0.02 1.26 16 36 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.13 0.75 7.93 -2.38 -0.02 0.73 16 Total: -1.00 -67.35 331.79 4.17 -63.18 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.39 Total: 15.23 kcal Atomic # 6 Polarization: -50.21 SS G_CDS: 3.20 Total: -47.01 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -1.38 Total: -76.05 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 17 Polarization: -2.56 SS G_CDS: -0.08 Total: -2.64 kcal Total: -67.35 4.17 -63.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926894194.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.593 kcal (2) G-P(sol) polarization free energy of solvation -67.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds